Remove release notes, and update all references from 1.3 (or earlier) to 1.4
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doc/install.html
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doc/install.html
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<head>
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<meta http-equiv="content-type" content="text/html; charset=UTF-8">
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<meta charset="utf-8">
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<title>VIVO Release 1 V1.3 Installation Guide</title>
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<title>VIVO Release 1 V1.4 Installation Guide</title>
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<link rel="stylesheet" href="./css/doc.css" media="screen">
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</head>
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<body>
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</div>
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<!-- Start of content -->
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<div id="wrapper-content" role="main">
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<h1>VIVO Release 1 V1.3 Installation Guide</h1>
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<h1>VIVO Release 1 V4 Installation Guide</h1>
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<small>
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July 29, 2011
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December 9, 2011
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</small>
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<toc>
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<ul>
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<li>
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<a href="#announcement">Release announcement for V1.3</a>
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</li>
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<li>
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<a href="#installation">Installation process for V1.3</a>
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</li>
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</ul>
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</toc>
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<!-- Release Announcement --><h2 id="announcement">Release anouncement for V1.3</h2>
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<!-- Release Announcement -->VIVO Release 1.3 incorporates changes to the search
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indexing, user accounts, menu management, ontology, and visualizations, and begins
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integration of VIVO Harvester functions with VIVO's own ingest tools.
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<br>
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<h4>Search</h4>
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<p>
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VIVO 1.3 will feature notable improvements to the local search, primarily to
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improve relevance ranking but also to boost the influence of semantic relationships
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in the search. This will improve recall by including text from related resources
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(e.g., adding a person's grant and publication titles to his or her search entry)
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and by boosting overall relevance ranking based on the number and nature of
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connections from one individual to others.
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</p>
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<p>
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VIVO is now using Apache Solr (http://lucene.apache.org/solr/) in place of
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Apache Lucene to improve indexing and faceting of search results. The migration
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to Solr also aligns the local search with the VIVO multi-site search site under
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development for release prior to the 2011 VIVO Conference.
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</p>
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<h4>Authorization</h4>
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<p>
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Release 1.3 provides an entirely new model of authorization within the
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VIVO application to allow more granular control over system
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configuration and editing. The first phase of the new user account
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interface is included in V1.3. This interface provides a user search, a
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root acount, and password reset functionality where the password gets
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emailed to the user. The next phase will provide the ability to create
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new roles.
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</p>
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<h4>Menu management</h4>
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<p>
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The menus across the top of the site (Home, People, Organizations,
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Research, Events) can now be managed in a web form instead of editing
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an RDF file. In addition to making site management much easier,
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form-based editing also allows more control over what classes of data
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are displayed and provides a mechanism to limit certain menu pages to
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content identified as internal to the institution.
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</p>
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<h4>FreeMaker template improvements</h4>
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<p>
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While less directly visible to the public, version 1.3 also includes
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additional changes focused directly on supporting open source community
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involvement in extending and customizing VIVO. The development team
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began a year ago to transition VIVO's code base away from Java Server
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Pages to the FreeMarker page templating system that much more cleanly
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separates internal application programming logic from page display.
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</p>
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<h4>Visualization</h4>
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<p>
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The visualization team has implemented a Map of Science visualization,
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which allows users to visually explore the scientific strengths of a
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university, school, department, or person in the VIVO instance. Users
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will be able to see where an organization or person's interests lay
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across 13 major scientific disciplines or 554 sub-disciplines, and will
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be able to see how these disciplines and sub-disciplines interrelate
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with one another on the map of science. Wireframes and design
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documentation for upcoming enhanced versions of the Map of Science
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visualization have already been developed; the Map of Science
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visualization will most likely be in the form of a PDF that a user can
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download.
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</p>
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<p>
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Several visualization also now provide a caching feature that improves
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performance after the initial processing.
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</p>
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<h4>QR Codes</h4>
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<p>
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Pages for people in VIVO now have an icon for displaying QR codes to allow
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capturing names and available contact information on mobile devices.
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</p>
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<h4>Harvester Integration</h4>
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<p>
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VIVO sites have the option with Release 1.3 of coordinating the configuration
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of VIVO and the Harvester to enable many Harvester functions to be initiated
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from the VIVO Ingest Tools menu in support of more unified and centralized
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management for data ingest.
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</p>
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<h4>Ontology changes</h4>
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<ul>
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<li>
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support for certifications and licenses
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</li>
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<li>
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expanded support for intellectual property (patents) (it was
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there as stub before but didn't allow common things such as assignee
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and issuer)
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</li>
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<li>
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support for editorial, reviewing and organizing activities
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</li>
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<li>
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expanded shared geographical instance data vocabulary to include
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the 50 U.S. states
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</li>
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<li>
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representing specific types of EducationalTraining:
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PostdoctoralTraining, Internship, MedicalResidency
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</li>
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</ul>
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<h4>Linked open data</h4>
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<p>
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Responses to linked data requests have been enhanced to include
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additional context about any individual, in working toward a goal of
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being able to provide all the data in a person's profile available as
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RDF via a single web request.
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</p>
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<br>
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<hr><!-- Page break --><!-- Installation process for V1.2 --><h2 id="installation">Installation process for V1.3</h2>
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<hr><!-- Page break --><!-- Installation process for V1.4 --><h2 id="installation">Installation process for V1.4</h2>
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<p>
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This document is a summary of the VIVO installation process. This
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and other documentation can be found on the <a href="http://vivoweb.org/support">support page</a>
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@ -274,8 +157,8 @@
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support websites.
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</p>
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<p>
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* Note that VIVO V1.2 or V1.3 will not run on older versions of MySQL that
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may have worked with 1.1.1. Be sure to run VIVO 1.2 with MySQL 5.1 or
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* Note that VIVO V1.4 will not run on older versions of MySQL that
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may have worked with 1.1.1. Be sure to run VIVO 1.4 with MySQL 5.1 or
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higher. Using unsupported versions may result in strange error messages
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related to table formatting or other unexpected problems.
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</p>
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@ -308,8 +191,8 @@
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<br>
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</h3>
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<p>
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Download the VIVO application source as either <code>rel-1.3.zip</code>
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or <code>rel-1.3.gz</code>
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Download the VIVO application source as either <code>rel-4.zip</code>
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or <code>rel-1.4.gz</code>
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file and unpack it on your web server:
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<br>
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<a href="http://vivoweb.org/download">http://vivoweb.org/download</a>
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The number of grants and publications is large.
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</li>
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</ul>
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VIVO V1.3 mitigates this problem by the way of a caching
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VIVO V1.4 mitigates this problem by the way of a caching
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mechanism and hence we can safely set this to be enabled by default.
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</td>
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</tr>
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