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Removing RDFServiceGraph

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This commit is contained in:
grahamtriggs 2015-10-29 20:50:47 +00:00
parent 3605888ad3
commit 75203eb716
18 changed files with 271 additions and 245 deletions
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6
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/ModelConstructorUtilities.java
View file

@ -7,6 +7,7 @@ import java.util.Map;
import com.hp.hpl.jena.query.Dataset;
import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory.ModelFactoryInterface;
import edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory.OrganizationAssociatedPeopleModelWithTypesFactory;
@ -50,4 +51,9 @@ public class ModelConstructorUtilities {
throws MalformedQueryParametersException {
return modelTypeIdentifierToFactory.get(modelType).getOrCreateModel(uri, dataset);
}
public static Model getOrConstructModel(String uri, String modelType, RDFService rdfService)
throws MalformedQueryParametersException {
return modelTypeIdentifierToFactory.get(modelType).getOrCreateModel(uri, rdfService);
}
}

27
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/PersonToGrantsModelConstructor.java
View file

@ -4,14 +4,10 @@ package edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor;
import java.util.HashSet;
import java.util.Set;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import com.hp.hpl.jena.query.Dataset;
import com.hp.hpl.jena.query.Query;
import com.hp.hpl.jena.query.QueryExecution;
import com.hp.hpl.jena.query.QueryExecutionFactory;
import com.hp.hpl.jena.query.QueryFactory;
import com.hp.hpl.jena.query.Syntax;
import com.hp.hpl.jena.rdf.model.Model;
import com.hp.hpl.jena.rdf.model.ModelFactory;
@ -24,7 +20,7 @@ public class PersonToGrantsModelConstructor implements ModelConstructor {
protected static final Syntax SYNTAX = Syntax.syntaxARQ;
private Dataset dataset;
private RDFService rdfService;
public static final String MODEL_TYPE = "PERSON_TO_GRANTS";
public static final String MODEL_TYPE_HUMAN_READABLE = "Grants for specific person via all roles";
@ -35,9 +31,9 @@ public class PersonToGrantsModelConstructor implements ModelConstructor {
private long before, after;
public PersonToGrantsModelConstructor(String personURI, Dataset dataset) {
public PersonToGrantsModelConstructor(String personURI, RDFService rdfService) {
this.personURI = personURI;
this.dataset = dataset;
this.rdfService = rdfService;
}
private Set<String> constructPersonGrantsQueryTemplate(String constructProperty, String roleType) {
@ -138,33 +134,20 @@ private Set<String> constructPersonGrantsQueryTemplate(String constructProperty,
}
private Model executeQuery(Set<String> constructQueries) {
Model constructedModel = ModelFactory.createDefaultModel();
before = System.currentTimeMillis();
log.debug("CONSTRUCT query string : " + constructQueries);
for (String currentQuery : constructQueries) {
Query query = null;
try {
query = QueryFactory.create(QueryConstants.getSparqlPrefixQuery() + currentQuery, SYNTAX);
rdfService.sparqlConstructQuery(QueryConstants.getSparqlPrefixQuery() + currentQuery, constructedModel);
} catch (Throwable th) {
log.error("Could not create CONSTRUCT SPARQL query for query "
+ "string. " + th.getMessage());
log.error(currentQuery);
}
QueryExecution qe = QueryExecutionFactory.create(query, dataset);
try {
qe.execConstruct(constructedModel);
} finally {
qe.close();
}
}
after = System.currentTimeMillis();

2
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/factory/ModelFactoryInterface.java
View file

@ -4,10 +4,12 @@ package edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory;
import com.hp.hpl.jena.query.Dataset;
import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
public interface ModelFactoryInterface {
public Model getOrCreateModel(String uri, Dataset dataset) throws MalformedQueryParametersException;
public Model getOrCreateModel(String uri, RDFService rdfService) throws MalformedQueryParametersException;
}

6
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/factory/OrganizationAssociatedPeopleModelWithTypesFactory.java
View file

@ -4,6 +4,7 @@ package edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory;
import com.hp.hpl.jena.query.Dataset;
import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.OrganizationAssociatedPeopleModelWithTypesConstructor;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker;
@ -43,4 +44,9 @@ public class OrganizationAssociatedPeopleModelWithTypesFactory implements
}
@Override
public Model getOrCreateModel(String uri, RDFService rdfService) throws MalformedQueryParametersException {
return null;
}
}

6
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/factory/OrganizationModelWithTypesFactory.java
View file

@ -4,6 +4,7 @@ package edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory;
import com.hp.hpl.jena.query.Dataset;
import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.OrganizationModelWithTypesConstructor;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker;
@ -39,4 +40,9 @@ public class OrganizationModelWithTypesFactory implements ModelFactoryInterface
return constructedModel;
}
}
@Override
public Model getOrCreateModel(String uri, RDFService rdfService) throws MalformedQueryParametersException {
return null;
}
}

6
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/factory/OrganizationToGrantsForSubOrganizationsFactory.java
View file

@ -4,6 +4,7 @@ package edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory;
import com.hp.hpl.jena.query.Dataset;
import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.OrganizationToGrantsForSubOrganizationsModelConstructor;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker;
@ -43,4 +44,9 @@ public class OrganizationToGrantsForSubOrganizationsFactory implements
}
@Override
public Model getOrCreateModel(String uri, RDFService rdfService) throws MalformedQueryParametersException {
return null;
}
}

6
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/factory/OrganizationToPublicationsForSubOrganizationsFactory.java
View file

@ -4,6 +4,7 @@ package edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory;
import com.hp.hpl.jena.query.Dataset;
import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.OrganizationToPublicationsForSubOrganizationsModelConstructor;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker;
@ -59,6 +60,11 @@ public class OrganizationToPublicationsForSubOrganizationsFactory implements
}
}
@Override
public Model getOrCreateModel(String uri, RDFService rdfService) throws MalformedQueryParametersException {
return null;
}
}

6
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/factory/PeopleToGrantsFactory.java
View file

@ -4,6 +4,7 @@ package edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory;
import com.hp.hpl.jena.query.Dataset;
import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.PeopleToGrantsModelConstructor;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker;
@ -40,4 +41,9 @@ public class PeopleToGrantsFactory implements ModelFactoryInterface {
return constructedModel;
}
}
@Override
public Model getOrCreateModel(String uri, RDFService rdfService) throws MalformedQueryParametersException {
return null;
}
}

6
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/factory/PeopleToPublicationsFactory.java
View file

@ -4,6 +4,7 @@ package edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory;
import com.hp.hpl.jena.query.Dataset;
import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.PeopleToPublicationsModelConstructor;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker;
@ -42,4 +43,9 @@ public class PeopleToPublicationsFactory implements ModelFactoryInterface {
}
@Override
public Model getOrCreateModel(String uri, RDFService rdfService) throws MalformedQueryParametersException {
return null;
}
}

10
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/factory/PersonToGrantsFactory.java
View file

@ -4,6 +4,7 @@ package edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory;
import com.hp.hpl.jena.query.Dataset;
import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.PersonToGrantsModelConstructor;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker;
@ -12,7 +13,12 @@ import edu.cornell.mannlib.vitro.webapp.visualization.visutils.ModelConstructor;
public class PersonToGrantsFactory implements ModelFactoryInterface {
@Override
public Model getOrCreateModel(String uri, Dataset dataset)
public Model getOrCreateModel(String uri, Dataset dataset) {
return null;
}
@Override
public Model getOrCreateModel(String uri, RDFService rdfService)
throws MalformedQueryParametersException {
Model candidateModel = ConstructedModelTracker.getModel(
@ -27,7 +33,7 @@ public class PersonToGrantsFactory implements ModelFactoryInterface {
} else {
ModelConstructor model = new PersonToGrantsModelConstructor(uri, dataset);
ModelConstructor model = new PersonToGrantsModelConstructor(uri, rdfService);
Model constructedModel = model.getConstructedModel();
ConstructedModelTracker.trackModel(

6
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/factory/PersonToPublicationsFactory.java
View file

@ -4,6 +4,7 @@ package edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory;
import com.hp.hpl.jena.query.Dataset;
import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.PersonToPublicationsModelConstructor;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker;
@ -42,4 +43,9 @@ public class PersonToPublicationsFactory implements ModelFactoryInterface {
}
@Override
public Model getOrCreateModel(String uri, RDFService rdfService) throws MalformedQueryParametersException {
return null;
}
}

6
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/factory/SubOrganizationWithinModelFactory.java
View file

@ -4,6 +4,7 @@ package edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory;
import com.hp.hpl.jena.query.Dataset;
import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.SubOrganizationWithinModelConstructor;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker;
@ -39,4 +40,9 @@ public class SubOrganizationWithinModelFactory implements ModelFactoryInterface
return constructedModel;
}
}
@Override
public Model getOrCreateModel(String uri, RDFService rdfService) throws MalformedQueryParametersException {
return null;
}
}

6
src/edu/cornell/mannlib/vitro/webapp/visualization/persongrantcount/PersonGrantCountRequestHandler.java
View file

@ -55,7 +55,7 @@ public class PersonGrantCountRequestHandler implements VisualizationRequestHandl
personURI,
UtilityFunctions.getIndividualLabelFromDAO(vitroRequest, personURI));
Map<String, Activity> grantsToURI = SelectOnModelUtilities.getGrantsForPerson(dataset, person, false);
Map<String, Activity> grantsToURI = SelectOnModelUtilities.getGrantsForPerson(vitroRequest.getRDFService(), person, false);
/*
@ -96,7 +96,7 @@ public class PersonGrantCountRequestHandler implements VisualizationRequestHandl
personURI,
UtilityFunctions.getIndividualLabelFromDAO(vitroRequest, personURI));
Map<String, Activity> grantsToURI = SelectOnModelUtilities.getGrantsForPerson(dataset, person, false);
Map<String, Activity> grantsToURI = SelectOnModelUtilities.getGrantsForPerson(vitroRequest.getRDFService(), person, false);
/*
* Create a map from the year to number of grants. Use the Grant's
@ -147,7 +147,7 @@ public class PersonGrantCountRequestHandler implements VisualizationRequestHandl
personURI,
UtilityFunctions.getIndividualLabelFromDAO(vitroRequest, personURI));
Map<String, Activity> grantsToURI = SelectOnModelUtilities.getGrantsForPerson(dataset, person, false);
Map<String, Activity> grantsToURI = SelectOnModelUtilities.getGrantsForPerson(vitroRequest.getRDFService(), person, false);
/*
* Create a map from the year to number of grants. Use the Grant's

2
src/edu/cornell/mannlib/vitro/webapp/visualization/personlevel/PersonLevelRequestHandler.java
View file

@ -123,7 +123,7 @@ public class PersonLevelRequestHandler implements VisualizationRequestHandler {
UtilityFunctions
.getIndividualLabelFromDAO(vitroRequest, egoURI));
Map<String, Activity> grantsToURI = SelectOnModelUtilities.getGrantsForPerson(dataset, person, false);
Map<String, Activity> grantsToURI = SelectOnModelUtilities.getGrantsForPerson(vitroRequest.getRDFService(), person, false);
/*
* Create a map from the year to number of grants. Use the Grant's

219
src/edu/cornell/mannlib/vitro/webapp/visualization/utilities/UtilitiesRequestHandler.java
View file

@ -5,6 +5,8 @@ package edu.cornell.mannlib.vitro.webapp.visualization.utilities;
import java.util.HashMap;
import java.util.Map;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFServiceException;
import edu.cornell.mannlib.vitro.webapp.rdfservice.ResultSetConsumer;
import org.apache.commons.lang.StringUtils;
import org.apache.commons.logging.Log;
import org.apache.jena.iri.IRI;
@ -71,10 +73,10 @@ public class UtilitiesRequestHandler implements VisualizationRequestHandler {
+ " || ?predicate = rdfs:label "
+ " || ?predicate = <http://www.w3.org/2006/vcard/ns#title>";
QueryRunner<GenericQueryMap> profileQueryHandler =
AllPropertiesQueryRunner profileQueryHandler =
new AllPropertiesQueryRunner(individualURI,
filterRule,
dataset,
vitroRequest.getRDFService(),
log);
GenericQueryMap profilePropertiesToValues =
@ -104,15 +106,16 @@ public class UtilitiesRequestHandler implements VisualizationRequestHandler {
QueryRunner<ResultSet> imageQueryHandler =
GenericQueryRunner imageQueryHandler =
new GenericQueryRunner(fieldLabelToOutputFieldLabel,
"",
whereClause,
"",
dataset);
return getThumbnailInformation(imageQueryHandler.getQueryResult(),
fieldLabelToOutputFieldLabel, vitroRequest);
ThumbnailInformationConsumer consumer = new ThumbnailInformationConsumer(vitroRequest, fieldLabelToOutputFieldLabel);
imageQueryHandler.sparqlSelectQuery(vitroRequest.getRDFService(), consumer);
return consumer.getInformation();
} else if (VisualizationFrameworkConstants.ARE_PUBLICATIONS_AVAILABLE_UTILS_VIS_MODE
.equalsIgnoreCase(visMode)) {
@ -130,7 +133,7 @@ public class UtilitiesRequestHandler implements VisualizationRequestHandler {
String groupOrderClause = "GROUP BY ?" + QueryFieldLabels.AUTHOR_URL + " \n";
QueryRunner<ResultSet> numberOfPublicationsQueryHandler =
GenericQueryRunner numberOfPublicationsQueryHandler =
new GenericQueryRunner(fieldLabelToOutputFieldLabel,
aggregationRules,
whereClause,
@ -139,8 +142,9 @@ public class UtilitiesRequestHandler implements VisualizationRequestHandler {
Gson publicationsInformation = new Gson();
return publicationsInformation.toJson(getNumberOfPublicationsForIndividual(
numberOfPublicationsQueryHandler.getQueryResult()));
NumPubsForIndividualConsumer consumer = new NumPubsForIndividualConsumer();
numberOfPublicationsQueryHandler.sparqlSelectQuery(vitroRequest.getRDFService(), consumer);
return publicationsInformation.toJson(consumer.getMap());
} else if (VisualizationFrameworkConstants.ARE_GRANTS_AVAILABLE_UTILS_VIS_MODE
.equalsIgnoreCase(visMode)) {
@ -170,7 +174,7 @@ public class UtilitiesRequestHandler implements VisualizationRequestHandler {
+ "FILTER (?subclass != core:PrincipalInvestigatorRole && "
+ "?subclass != core:CoPrincipalInvestigatorRole)}";
QueryRunner<ResultSet> numberOfGrantsQueryHandler =
GenericQueryRunner numberOfGrantsQueryHandler =
new GenericQueryRunner(fieldLabelToOutputFieldLabel,
aggregationRules,
whereClause,
@ -179,8 +183,10 @@ public class UtilitiesRequestHandler implements VisualizationRequestHandler {
Gson grantsInformation = new Gson();
return grantsInformation.toJson(getNumberOfGrantsForIndividual(
numberOfGrantsQueryHandler.getQueryResult()));
NumGrantsForIndividualConsumer consumer = new NumGrantsForIndividualConsumer();
numberOfGrantsQueryHandler.sparqlSelectQuery(vitroRequest.getRDFService(), consumer);
return grantsInformation.toJson(consumer.getMap());
} else if (VisualizationFrameworkConstants.COAUTHOR_UTILS_VIS_MODE
.equalsIgnoreCase(visMode)) {
@ -319,17 +325,16 @@ public class UtilitiesRequestHandler implements VisualizationRequestHandler {
+ "ORDER BY DESC(?numOfChildren)\n"
+ "LIMIT 1\n";
QueryRunner<ResultSet> highestLevelOrganizationQueryHandler =
GenericQueryRunner highestLevelOrganizationQueryHandler =
new GenericQueryRunner(fieldLabelToOutputFieldLabel,
aggregationRules,
whereClause,
groupOrderClause,
dataset);
return getHighestLevelOrganizationTemporalGraphVisURL(
highestLevelOrganizationQueryHandler.getQueryResult(),
fieldLabelToOutputFieldLabel,
vitroRequest);
HighetTopLevelOrgTemporalGraphURLConsumer consumer = new HighetTopLevelOrgTemporalGraphURLConsumer(vitroRequest, fieldLabelToOutputFieldLabel);
highestLevelOrganizationQueryHandler.sparqlSelectQuery(vitroRequest.getRDFService(), consumer);
return consumer.getTopLevelURL();
} else {
@ -343,110 +348,136 @@ public class UtilitiesRequestHandler implements VisualizationRequestHandler {
}
private String getHighestLevelOrganizationTemporalGraphVisURL(ResultSet resultSet,
Map<String, String> fieldLabelToOutputFieldLabel,
VitroRequest vitroRequest) {
private class HighetTopLevelOrgTemporalGraphURLConsumer extends ResultSetConsumer {
private VitroRequest vitroRequest;
private Map<String, String> fieldLabelToOutputFieldLabel;
private String topLevelURL = null;
private GenericQueryMap queryResult = new GenericQueryMap();
GenericQueryMap queryResult = new GenericQueryMap();
HighetTopLevelOrgTemporalGraphURLConsumer(VitroRequest vitroRequest, Map<String, String> fieldLabelToOutputFieldLabel) {
this.vitroRequest = vitroRequest;
this.fieldLabelToOutputFieldLabel = fieldLabelToOutputFieldLabel;
}
@Override
protected void processQuerySolution(QuerySolution qs) {
if (topLevelURL != null) {
return;
}
while (resultSet.hasNext()) {
QuerySolution solution = resultSet.nextSolution();
RDFNode organizationNode = solution.get(
fieldLabelToOutputFieldLabel
.get("organization"));
RDFNode organizationNode = qs.get(fieldLabelToOutputFieldLabel.get("organization"));
if (organizationNode != null) {
queryResult.addEntry(fieldLabelToOutputFieldLabel.get("organization"),
organizationNode.toString());
queryResult.addEntry(fieldLabelToOutputFieldLabel.get("organization"), organizationNode.toString());
String individualLocalName = UtilityFunctions.getIndividualLocalName(
organizationNode.toString(),
vitroRequest);
String individualLocalName = UtilityFunctions.getIndividualLocalName(organizationNode.toString(), vitroRequest);
if (StringUtils.isNotBlank(individualLocalName)) {
return UrlBuilder.getUrl(VisualizationFrameworkConstants.SHORT_URL_VISUALIZATION_REQUEST_PREFIX)
+ "/" + VisualizationFrameworkConstants.PUBLICATION_TEMPORAL_VIS_SHORT_URL
+ "/" + individualLocalName;
}
topLevelURL = UrlBuilder.getUrl(VisualizationFrameworkConstants.SHORT_URL_VISUALIZATION_REQUEST_PREFIX)
+ "/" + VisualizationFrameworkConstants.PUBLICATION_TEMPORAL_VIS_SHORT_URL
+ "/" + individualLocalName;
} else {
ParamMap highestLevelOrganizationTemporalGraphVisURLParams = new ParamMap(
VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY,
organizationNode.toString(),
VisualizationFrameworkConstants.VIS_TYPE_KEY,
VisualizationFrameworkConstants.ENTITY_COMPARISON_VIS);
ParamMap highestLevelOrganizationTemporalGraphVisURLParams = new ParamMap(
VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY,
organizationNode.toString(),
VisualizationFrameworkConstants.VIS_TYPE_KEY,
VisualizationFrameworkConstants.ENTITY_COMPARISON_VIS);
return UrlBuilder.getUrl(
topLevelURL = UrlBuilder.getUrl(
VisualizationFrameworkConstants.FREEMARKERIZED_VISUALIZATION_URL_PREFIX,
highestLevelOrganizationTemporalGraphVisURLParams);
}
} else {
RDFNode organizationLabelNode = qs.get(fieldLabelToOutputFieldLabel.get("organizationLabel"));
}
if (organizationLabelNode != null) {
queryResult.addEntry(fieldLabelToOutputFieldLabel.get("organizationLabel"), organizationLabelNode.toString());
}
RDFNode organizationLabelNode = solution.get(
fieldLabelToOutputFieldLabel
.get("organizationLabel"));
RDFNode numberOfChildrenNode = qs.getLiteral("numOfChildren");
if (organizationLabelNode != null) {
queryResult.addEntry(fieldLabelToOutputFieldLabel.get("organizationLabel"),
organizationLabelNode.toString());
}
RDFNode numberOfChildrenNode = solution.getLiteral("numOfChildren");
if (numberOfChildrenNode != null) {
queryResult.addEntry("numOfChildren",
String.valueOf(numberOfChildrenNode.asLiteral().getInt()));
if (numberOfChildrenNode != null) {
queryResult.addEntry("numOfChildren",
String.valueOf(numberOfChildrenNode.asLiteral().getInt()));
}
}
}
return "";
public String getTopLevelURL() {
return topLevelURL == null ? "" : topLevelURL;
}
}
private GenericQueryMap getNumberOfGrantsForIndividual(ResultSet resultSet) {
private static class NumGrantsForIndividualConsumer extends ResultSetConsumer {
GenericQueryMap queryResult = new GenericQueryMap();
while (resultSet.hasNext()) {
QuerySolution solution = resultSet.nextSolution();
RDFNode numberOfGrantsNode = solution.getLiteral("numOfGrants");
@Override
protected void processQuerySolution(QuerySolution qs) {
RDFNode numberOfGrantsNode = qs.getLiteral("numOfGrants");
if (numberOfGrantsNode != null) {
queryResult.addEntry("numOfGrants",
String.valueOf(numberOfGrantsNode.asLiteral().getInt()));
queryResult.addEntry("numOfGrants", String.valueOf(numberOfGrantsNode.asLiteral().getInt()));
}
}
public GenericQueryMap getMap() {
return queryResult;
}
}
private static class NumPubsForIndividualConsumer extends ResultSetConsumer {
GenericQueryMap queryResult = new GenericQueryMap();
@Override
protected void processQuerySolution(QuerySolution qs) {
RDFNode numberOfPublicationsNode = qs.getLiteral("numOfPublications");
if (numberOfPublicationsNode != null) {
queryResult.addEntry("numOfPublications", String.valueOf(numberOfPublicationsNode.asLiteral().getInt()));
}
}
public GenericQueryMap getMap() {
return queryResult;
}
}
private static class ThumbnailInformationConsumer extends ResultSetConsumer {
private VitroRequest vitroRequest;
private Map<String, String> fieldLabelToOutputFieldLabel;
private String finalThumbNailLocation = "";
ThumbnailInformationConsumer(VitroRequest vitroRequest, Map<String, String> fieldLabelToOutputFieldLabel) {
this.vitroRequest = vitroRequest;
this.fieldLabelToOutputFieldLabel = fieldLabelToOutputFieldLabel;
}
@Override
protected void processQuerySolution(QuerySolution qs) {
RDFNode downloadLocationNode = qs.get(
fieldLabelToOutputFieldLabel
.get("downloadLocation"));
RDFNode fileNameNode = qs.get(fieldLabelToOutputFieldLabel.get("fileName"));
if (downloadLocationNode != null && fileNameNode != null) {
finalThumbNailLocation =
FileServingHelper
.getBytestreamAliasUrl(downloadLocationNode.toString(),
fileNameNode.toString(),
vitroRequest.getSession().getServletContext());
}
}
return queryResult;
}
private GenericQueryMap getNumberOfPublicationsForIndividual(ResultSet resultSet) {
GenericQueryMap queryResult = new GenericQueryMap();
while (resultSet.hasNext()) {
QuerySolution solution = resultSet.nextSolution();
RDFNode numberOfPublicationsNode = solution.getLiteral("numOfPublications");
if (numberOfPublicationsNode != null) {
queryResult.addEntry(
"numOfPublications",
String.valueOf(numberOfPublicationsNode.asLiteral().getInt()));
}
public String getInformation() {
return finalThumbNailLocation;
}
return queryResult;
}
private String getThumbnailInformation(ResultSet resultSet,
Map<String, String> fieldLabelToOutputFieldLabel,
VitroRequest vitroRequest) {
@ -457,18 +488,6 @@ public class UtilitiesRequestHandler implements VisualizationRequestHandler {
QuerySolution solution = resultSet.nextSolution();
RDFNode downloadLocationNode = solution.get(
fieldLabelToOutputFieldLabel
.get("downloadLocation"));
RDFNode fileNameNode = solution.get(fieldLabelToOutputFieldLabel.get("fileName"));
if (downloadLocationNode != null && fileNameNode != null) {
finalThumbNailLocation =
FileServingHelper
.getBytestreamAliasUrl(downloadLocationNode.toString(),
fileNameNode.toString(),
vitroRequest.getSession().getServletContext());
}
}
return finalThumbNailLocation;
}

74
src/edu/cornell/mannlib/vitro/webapp/visualization/visutils/AllPropertiesQueryRunner.java
View file

@ -2,6 +2,9 @@
package edu.cornell.mannlib.vitro.webapp.visualization.visutils;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFServiceException;
import edu.cornell.mannlib.vitro.webapp.rdfservice.ResultSetConsumer;
import org.apache.commons.lang.StringUtils;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
@ -37,53 +40,22 @@ public class AllPropertiesQueryRunner implements QueryRunner<GenericQueryMap> {
protected static final Syntax SYNTAX = Syntax.syntaxARQ;
private String filterRule, individualURI;
private Dataset dataset;
private RDFService rdfService;
private Log log = LogFactory.getLog(AllPropertiesQueryRunner.class.getName());
public AllPropertiesQueryRunner(String individualURI,
String filterRule,
Dataset dataset,
RDFService rdfService,
Log log) {
this.individualURI = individualURI;
this.filterRule = filterRule;
this.dataset = dataset;
this.rdfService = rdfService;
this.log = log;
}
private GenericQueryMap createJavaValueObjects(ResultSet resultSet) {
GenericQueryMap queryResult = new GenericQueryMap();
while (resultSet.hasNext()) {
QuerySolution solution = resultSet.nextSolution();
RDFNode predicateNode = solution.get(QueryFieldLabels.PREDICATE);
RDFNode objectNode = solution.get(QueryFieldLabels.OBJECT);
if (predicateNode != null && objectNode != null) {
queryResult.addEntry(predicateNode.toString(),
objectNode.toString());
}
}
return queryResult;
}
private ResultSet executeQuery(String queryText,
Dataset dataset) {
QueryExecution queryExecution = null;
Query query = QueryFactory.create(queryText, SYNTAX);
queryExecution = QueryExecutionFactory.create(query, dataset);
return queryExecution.execSelect();
}
private String generateGenericSparqlQuery(String queryURI, String filterRule) {
// Resource uri1 = ResourceFactory.createResource(queryURI);
String filterClause;
@ -130,11 +102,35 @@ public class AllPropertiesQueryRunner implements QueryRunner<GenericQueryMap> {
throw new MalformedQueryParametersException("URI parameter is either null or empty.");
}
ResultSet resultSet = executeQuery(generateGenericSparqlQuery(
this.individualURI,
this.filterRule),
this.dataset);
CreateJavaVOConsumer consumer = new CreateJavaVOConsumer();
try {
rdfService.sparqlSelectQuery(generateGenericSparqlQuery(
this.individualURI,
this.filterRule),
consumer);
} catch (RDFServiceException e) {
log.error("Unable to execute query", e);
throw new MalformedQueryParametersException(e);
}
return consumer.getMap();
}
return createJavaValueObjects(resultSet);
private class CreateJavaVOConsumer extends ResultSetConsumer {
GenericQueryMap queryResult = new GenericQueryMap();
@Override
protected void processQuerySolution(QuerySolution qs) {
RDFNode predicateNode = qs.get(QueryFieldLabels.PREDICATE);
RDFNode objectNode = qs.get(QueryFieldLabels.OBJECT);
if (predicateNode != null && objectNode != null) {
queryResult.addEntry(predicateNode.toString(),
objectNode.toString());
}
}
public GenericQueryMap getMap() {
return queryResult;
}
}
}

12
src/edu/cornell/mannlib/vitro/webapp/visualization/visutils/GenericQueryRunner.java
View file

@ -4,6 +4,9 @@ package edu.cornell.mannlib.vitro.webapp.visualization.visutils;
import java.util.Map;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFServiceException;
import edu.cornell.mannlib.vitro.webapp.rdfservice.ResultSetConsumer;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
@ -101,4 +104,13 @@ public class GenericQueryRunner implements QueryRunner<ResultSet> {
return resultSet;
}
public void sparqlSelectQuery(RDFService rdfService, ResultSetConsumer consumer) throws MalformedQueryParametersException {
try {
rdfService.sparqlSelectQuery(generateGenericSparqlQuery(), consumer);
} catch (RDFServiceException e) {
log.error("Unable to execute: [" + generateGenericSparqlQuery() + "]", e);
throw new MalformedQueryParametersException(e);
}
}
}

54
src/edu/cornell/mannlib/vitro/webapp/visualization/visutils/SelectOnModelUtilities.java
View file

@ -7,6 +7,7 @@ import java.util.HashSet;
import java.util.Map;
import java.util.Set;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import org.apache.commons.lang.StringUtils;
import com.hp.hpl.jena.query.Dataset;
@ -75,53 +76,6 @@ public class SelectOnModelUtilities {
return entityWithSubOrganizations;
}
public static Entity getSubjectPersonEntity(Dataset dataset,
String subjectEntityURI) throws MalformedQueryParametersException {
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
fieldLabelToOutputFieldLabel.put("authorLabel", QueryFieldLabels.AUTHOR_LABEL);
String whereClause = ""
+ " <" + subjectEntityURI + "> rdfs:label ?authorLabel . ";
QueryRunner<ResultSet> personQuery =
new GenericQueryRunner(fieldLabelToOutputFieldLabel,
"",
whereClause,
"",
dataset);
Entity personEntity = new Entity(subjectEntityURI);
ResultSet queryResult = personQuery.getQueryResult();
while (queryResult.hasNext()) {
QuerySolution solution = queryResult.nextSolution();
RDFNode personLabelNode = solution.get(QueryFieldLabels.AUTHOR_LABEL);
if (personLabelNode != null) {
personEntity.setEntityLabel(personLabelNode.toString());
}
}
/*
* We are adding A person as it's own subentity in order to make our code for geenrating csv, json
* & other data as streamlined as possible between entities of type Organization & Person.
* */
SubEntity subEntity = new SubEntity(subjectEntityURI, personEntity.getEntityLabel());
subEntity.setEntityClass(VOConstants.EntityClassType.PERSON);
personEntity.addSubEntity(subEntity);
// Entity entityWithParentOrganizations = getAllParentOrganizations(dataset, subjectEntityURI);
//
// personEntity.addParents(entityWithParentOrganizations.getParents());
return personEntity;
}
public static Entity getAllParentOrganizations(Dataset dataset,
String subjectEntityURI) throws MalformedQueryParametersException {
Model organizationModel = ModelConstructorUtilities
@ -757,7 +711,7 @@ public class SelectOnModelUtilities {
}
public static Map<String, Activity> getGrantsForPerson(
Dataset dataset, SubEntity person, boolean doCache)
RDFService rdfService, SubEntity person, boolean doCache)
throws MalformedQueryParametersException {
Map<String, Activity> allGrantURIToVOs = new HashMap<String, Activity>();
@ -775,10 +729,10 @@ public class SelectOnModelUtilities {
.getOrConstructModel(
person.getIndividualURI(),
PersonToGrantsModelConstructor.MODEL_TYPE,
dataset);
rdfService);
} else {
ModelConstructor model = new PersonToGrantsModelConstructor(person.getIndividualURI(), dataset);
ModelConstructor model = new PersonToGrantsModelConstructor(person.getIndividualURI(), rdfService);
personGrantsModel = model.getConstructedModel();
}