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VIVO-869 Drastically simplify the search configuration.

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Create LabelsAcrossContextNodes to replace AdditionalURIsForContextNodes. It's more configurable.
Create SelectQueryUriFinder to replace AdditionalUrisForVCards. It's more configurable.
Rename SimpleSparqlQueryDocumentModifier to SelectQueryDocumentModifier, to conform.
Radically simplify the VIVO search configuration, omitting all special cases except those for VCards.
This commit is contained in:
j2blake 2015-02-06 15:22:28 -05:00
parent 431847165b
commit 7a47c6b75d
6 changed files with 916 additions and 1997 deletions
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525
rdf/display/everytime/searchIndexerConfigurationVivo.n3
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@ -15,13 +15,10 @@
# ------------------------------------ # ------------------------------------
:uriFinder_forContextNodes :extension_forContextNodes
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.indexing.IndexingUriFinder> , a <java:edu.cornell.mannlib.vitro.webapp.searchindex.indexing.IndexingUriFinder> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.indexing.AdditionalURIsForContextNodes> . <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes> .
:uriFinder_forVCards
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.indexing.IndexingUriFinder> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.indexing.AdditionalUrisForVCards> .
# ------------------------------------ # ------------------------------------
@ -29,14 +26,43 @@
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.CalculateParameters> , a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.CalculateParameters> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> . <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> .
# ------------------------------------
:vivoUriFinder_VCard
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.indexing.IndexingUriFinder> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.indexing.SelectQueryUriFinder> ;
rdfs:label "Preferred title" ;
:hasPredicateRestriction "http://www.w3.org/2006/vcard/ns#title" ;
:hasPredicateRestriction "http://www.w3.org/2006/vcard/ns#email" ;
:hasSelectQuery """
PREFIX vcard: <http://www.w3.org/2006/vcard/ns#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT ?uri
WHERE {
?uri obo:ARG_2000028 ?card .
?card a vcard:Individual .
?card vcard:hasTitle ?subject .
}
""" ;
:hasSelectQuery """
PREFIX vcard: <http://www.w3.org/2006/vcard/ns#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT ?uri
WHERE {
?uri obo:ARG_2000028 ?card .
?card a vcard:Individual .
?card vcard:hasEmail ?subject .
}
""" .
:vivodocumentModifier_PreferredTitle :vivodocumentModifier_PreferredTitle
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> , a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SelectQueryDocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ; <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ;
rdfs:label "Preferred title" ; rdfs:label "Preferred title" ;
:hasTargetField "ALLTEXT" ; :hasTargetField "ALLTEXT" ;
:hasTargetField "ALLTEXTUNSTEMMED" ; :hasTargetField "ALLTEXTUNSTEMMED" ;
:hasTargetField "PREFERRED_TITLE" ; :hasTargetField "PREFERRED_TITLE" ;
:hasSparqlQuery """ :hasSelectQuery """
PREFIX vcard: <http://www.w3.org/2006/vcard/ns#> PREFIX vcard: <http://www.w3.org/2006/vcard/ns#>
PREFIX obo: <http://purl.obolibrary.org/obo/> PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT ?title SELECT ?title
@ -49,10 +75,10 @@
""" . """ .
:vivodocumentModifier_EmailAddress :vivodocumentModifier_EmailAddress
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> , a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SelectQueryDocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ; <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ;
rdfs:label "Email address" ; rdfs:label "Email address" ;
:hasSparqlQuery """ :hasSelectQuery """
PREFIX vcard: <http://www.w3.org/2006/vcard/ns#> PREFIX vcard: <http://www.w3.org/2006/vcard/ns#>
PREFIX obo: <http://purl.obolibrary.org/obo/> PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT ?email SELECT ?email
@ -63,483 +89,4 @@
?emailHolder vcard:email ?email . ?emailHolder vcard:email ?email .
} }
""" . """ .
:vivodocumentModifier_NamesAcrossContextNodes
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ;
rdfs:label "Names of objects across context nodes" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?rawresult) as ?result)
WHERE {
?uri core:relatedBy ?rel .
?rel rdf:type ?type .
?rel core:relates ?other .
?other rdfs:label ?rawresult .
FILTER ( ?type IN ( core:Position, core:Authorship, core:Collaboration, core:Affiliation ) )
}
""" .
:vivodocumentModifier_AgentContextNodeFields
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ;
rdfs:label "Add many fields to agents." ;
:hasTypeRestriction "http://xmlns.com/foaf/0.1/foaf:Agent" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty)
WHERE {
?uri ?b ?c .
?c rdf:type core:Position .
?c core:hrJobTitle ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty)
WHERE {
?uri ?b ?c .
?c rdf:type core:Position .
?c core:relates ?i .
?i rdf:type foaf:Organization .
?i rdfs:label ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty)
WHERE {
?uri ?b ?c .
?c rdf:type core:Position .
?c core:titleOrRole ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?HRJobTitle) as ?hrJobTitle)
(str(?PositionInOrganization) as ?positionInOrganization)
(str(?TitleOrRole) as ?titleOrRole)
WHERE {
?uri ?b ?c .
?c rdf:type core:Position .
OPTIONAL { ?c core:hrJobTitle ?HRJobTitle . } .
OPTIONAL { ?c core:relates ?i .
?i rdf:type foaf:Organization .
?i rdfs:label ?PositionInOrganization . } .
OPTIONAL { ?c core:titleOrRole ?TitleOrRole . } .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty)
WHERE {
?uri ?b ?c .
?c rdf:type core:AdvisingRelationship .
?c rdfs:label ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty)
WHERE {
?uri ?b ?c .
?c rdf:type core:AdvisingRelationship .
?c core:degreeCandidacy ?e .
?e rdfs:label ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?label) as ?adviseeLabel)
WHERE {
?c rdf:type core:AdvisingRelationship .
?c core:relates ?uri .
?uri obo:RO_0000053 ?advisorRole .
?advisorRole rdf:type core:AdvisorRole .
?c core:relates ?d .
?d rdf:type foaf:Person .
?d obo:RO_0000053 ?adviseeRole .
?adviseeRole rdf:type core:AdviseeRole .
?d rdfs:label ?label .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?label) as ?advisorLabel)
WHERE {
?c rdf:type core:AdvisingRelationship .
?c core:relates ?uri .
?uri obo:RO_0000053 ?adviseeRole .
?adviseeRole rdf:type core:AdviseeRole .
?c core:relates ?d .
?d rdf:type foaf:Person .
?d obo:RO_0000053 ?advisorRole .
?advisorRole rdf:type core:AdvisorRole .
?d rdfs:label ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty)
WHERE {
?uri ?b ?c .
?c rdf:type core:Authorship .
?c core:relates ?f .
?f rdf:type foaf:Person .
?f rdfs:label ?ContextNodeProperty .
FILTER( ?f != ?uri )
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty)
WHERE {
?uri ?b ?c .
?c rdf:type core:Authorship .
?c core:relates ?h .
?h rdf:type obo:IAO_0000030 .
?h rdfs:label ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?AwardLabel) as ?awardLabel)
(str(?AwardConferredBy) as ?awardConferredBy)
(str(?Description) as ?description)
WHERE {
?uri ?b ?c .
?c rdf:type core:AwardReceipt .
OPTIONAL { ?c core:relates ?e . ?e rdf:type core:Award . ?e rdfs:label ?AwardLabel . } .
OPTIONAL { ?c core:assignedBy ?d . ?d rdf:type foaf:Organization . ?d rdfs:label ?AwardConferredBy . } .
OPTIONAL { ?c core:description ?Description . } .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?OrganizationLabel) as ?organizationLabel)
WHERE {
?uri ?b ?c .
?c rdf:type obo:BFO_0000023 ;
core:roleContributesTo ?Organization .
?Organization rdf:type core:Organization .
?Organization rdfs:label ?OrganizationLabel .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?AcademicDegreeLabel) as ?academicDegreeLabel)
(str(?MajorField) as ?majorField)
(str(?DepartmentOrSchool) as ?departmentOrSchool)
(str(?TrainingAtOrganizationLabel) as ?trainingAtOrganizationLabel)
WHERE {
?uri ?b ?c .
?c rdf:type core:EducationalProcess .
OPTIONAL { ?c core:relates ?d .
?d rdf:type core:AwardedDegree .
?d core:relates ?e .
?e rdf:type core:AcademicDegree .
?e rdfs:label ?AcademicDegreeLabel . } .
OPTIONAL { ?c core:majorField ?MajorField .} .
OPTIONAL { ?c core:departmentOrSchool ?DepartmentOrSchool . }
OPTIONAL { ?c obo:RO_0000057 ?f .
?f rdf:type foaf:organization .
?f rdfs:label ?TrainingAtOrganizationLabel . } .
}
""" .
:vivodocumentModifier_MembershipFields
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ;
rdfs:label "Add people to organization and vice versa." ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?rawresult) as ?result)
WHERE {
?uri rdf:type foaf:Organization .
?role core:roleContributesTo ?uri .
?person obo:RO_0000053 ?role .
?person rdfs:label ?rawresult .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?rawresult) as ?result)
WHERE {
?uri rdf:type foaf:Person .
?uri obo:RO_0000053 / core:roleContributesTo / rdfs:label ?rawresult .
}
""" .
:vivodocumentModifier_EducationFields
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ;
rdfs:label "Labels for a degree and the granting organization." ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?rawresult) as ?result)
WHERE {
?uri core:relates ?deg .
?deg rdf:type core:AwardedDegree .
?deg rdfs:label ?rawresult .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?rawresult) as ?result)
WHERE {
?uri core:relates ?deg .
?deg rdf:type core:AwardedDegree .
?deg core:assignedBy ?org .
?org rdfs:label ?rawresult .
}
""" .
:vivodocumentModifier_AdvisingFields
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ;
rdfs:label "Labels for people in an advising relationship." ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?rawresult) as ?result)
WHERE {
?uri core:relatedBy ?rel .
?rel rdf:type core:AdvisingRelationship .
?rel core:relates ?other .
?other rdfs:label ?rawresult .
FILTER( ?other != ?uri )
}
""" .
:vivodocumentModifier_Grants_Projects_ForPerson
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ;
rdfs:label "Grants and projects for person" ;
:hasTypeRestriction "http://xmlns.com/foaf/0.1/Person" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?rawresult) as ?result)
WHERE {
?grant core:relates ?uri .
?grant rdf:type core:Grant .
?grant rdfs:label ?rawresult .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?rawresult) as ?result) WHERE {
?uri obo:RO_0000053 ?role .
?role obo:BFO_0000054 ?project .
?project rdf:type core:Project .
?project rdfs:label ?rawresult .
}
""" .
:vivodocumentModifier_People_Organizations_Projects_ForGrant
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ;
rdfs:label "People, organizations, and projects for grant" ;
:hasTypeRestriction "http://vivoweb.org/ontology/core#Grant" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?rawresult) as ?result)
WHERE {
?uri core:relates ?person .
?person rdf:type foaf:Person .
?person rdfs:label ?rawresult .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?rawresult) as ?result) WHERE {
?uri core:relates ?org .
?org rdf:type foaf:Organization .
?org rdfs:label ?rawresult .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?rawresult) as ?result) WHERE {
?uri core:relates ?role .
?role obo:BFO_0000054 ?project .
?project rdf:type core:Project .
?project rdfs:label ?rawresult .
}
""" .
:vivodocumentModifier_Grants_People_ForProject
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ;
rdfs:label "Grants and people for project" ;
:hasTypeRestriction "http://vivoweb.org/ontology/core#Project" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?rawresult) as ?result) WHERE {
?role obo:BFO_0000054 ?uri .
?grant core:relates ?role .
?grant rdf:type core:Grant .
?grant rdfs:label ?rawresult .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?rawresult) as ?result) WHERE {
?role obo:BFO_0000054 ?uri .
?role obo:RO_0000053 ?person .
?person rdf:type foaf:Person .
?person rdfs:label ?rawresult .
}
""" .
:vivodocumentModifier_GrantsForOrganization
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ;
rdfs:label "Grants for organization" ;
:hasTypeRestriction "http://xmlns.com/foaf/0.1/Organization" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?rawresult) as ?result) WHERE {
?grant core:relates ?uri .
?grant rdf:type core:Grant .
?grant rdfs:label ?rawresult .
}
""" .
:vivodocumentModifier_InformationResources
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ;
rdfs:label "Authors, featured, editors, and subject area for InformationResource" ;
:hasTypeRestriction "http://purl.obolibrary.org/IAO_0000030" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty) WHERE {
?uri core:relatedBy ?a .
?a rdf:type core:Authorship .
?a core:relates ?b .
?b rdf:type foaf:Agent .
?b rdfs:label ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty) WHERE {
?uri core:features ?i .
?i rdfs:label ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty) WHERE {
?uri core:relatedBy ?e .
?e rdf:type core:Editorship .
?e core:relates ?i .
?i rdf:type foaf:Agent .
?i rdfs:label ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vitroDisplay: <http://vitro.mannlib.cornell.edu/ontologies/display/1.1#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX obo: <http://purl.obolibrary.org/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX localNav: <http://vitro.mannlib.cornell.edu/ns/localnav#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty) WHERE {
?uri core:hasSubjectArea ?f .
?f rdfs:label ?ContextNodeProperty .
}
""" .

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/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.searchindex.extensions;
import static edu.cornell.mannlib.vitro.webapp.search.VitroSearchTermNames.ALLTEXT;
import static edu.cornell.mannlib.vitro.webapp.search.VitroSearchTermNames.ALLTEXTUNSTEMMED;
import static edu.cornell.mannlib.vitro.webapp.utils.sparql.SelectQueryRunner.createQueryContext;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Collections;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import com.hp.hpl.jena.rdf.model.ResourceFactory;
import com.hp.hpl.jena.rdf.model.Statement;
import com.hp.hpl.jena.vocabulary.RDFS;
import edu.cornell.mannlib.vitro.webapp.beans.Individual;
import edu.cornell.mannlib.vitro.webapp.beans.VClass;
import edu.cornell.mannlib.vitro.webapp.modelaccess.ContextModelAccess;
import edu.cornell.mannlib.vitro.webapp.modules.searchEngine.SearchInputDocument;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier;
import edu.cornell.mannlib.vitro.webapp.searchindex.indexing.IndexingUriFinder;
import edu.cornell.mannlib.vitro.webapp.utils.configuration.ContextModelsUser;
import edu.cornell.mannlib.vitro.webapp.utils.configuration.Property;
import edu.cornell.mannlib.vitro.webapp.utils.configuration.Validation;
/**
* If an individual has context nodes then the search document for that
* individual should include the labels of the partners across those nodes. The
* labels will be added to the ALLTEXT and ALLTEXTUNSTEMMED fields.
*
* We can add restrictions to say that this only applies to individuals of
* certain types. We can also restrict the type of the applicable context nodes.
*
* An instance of this class acts as both a DocumentModifier and an
* IndexingUriFinder:
*
* As a DocumentModifier, it looks across approved context nodes to fetch the
* labels of the partners.
*
* As an IndexingUriFinder, it recognizes that this relationship can be changed
* by a change to a "label" statement, or to a "relates" property, and finds all
* partners as candidates for reindexing.
*
* <pre>
* Configuration:
* rdfs:label -- Optional. Appears in the timings and debug statements.
* :hasTypeRestriction -- Optional. Match any. If none, then no restriction.
* :appliesToContextNodeType -- Optional. Match any. If none, then no restriction.
* </pre>
*/
public class LabelsAcrossContextNodes implements IndexingUriFinder,
DocumentModifier, ContextModelsUser {
private static final Log log = LogFactory
.getLog(LabelsAcrossContextNodes.class);
private RDFService rdfService;
/**
* A name to be used in logging, to identify this instance. If not provided,
* then a descriptive label will be created.
*/
private String label;
/**
* URIs of the types of individuals to whom this instance applies.
*
* If this is not empty and an individual does not have any of these types,
* then skip that individual.
*/
private Set<String> typeRestrictions = new HashSet<>();
/**
* URIs of the types of acceptable context nodes.
*
* If this is not empty and a context node does not have any of these types,
* then skip that context node's label.
*/
private Set<String> contextNodeClasses = new HashSet<>();
@Override
public void setContextModels(ContextModelAccess models) {
this.rdfService = models.getRDFService();
}
@Property(uri = "http://www.w3.org/2000/01/rdf-schema#label")
public void setLabel(String l) {
label = l;
}
@Property(uri = "http://vitro.mannlib.cornell.edu/ns/vitro/ApplicationSetup#hasTypeRestriction")
public void addTypeRestriction(String typeUri) {
typeRestrictions.add(typeUri);
}
@Property(uri = "http://vitro.mannlib.cornell.edu/ns/vitro/ApplicationSetup#appliesToContextNodeType")
public void addContextNodeClass(String cnc) {
contextNodeClasses.add(cnc);
}
@Validation
public void validate() {
if (label == null) {
label = String.format("%s[types=%s, contextNodeTypes=%s]", this
.getClass().getSimpleName(),
formatRestrictions(typeRestrictions),
formatRestrictions(contextNodeClasses));
}
}
private String formatRestrictions(Set<String> uris) {
if (uris.isEmpty()) {
return "ALL";
} else {
return localNames(uris).toString();
}
}
private Set<String> localNames(Set<String> uris) {
Set<String> names = new HashSet<>();
for (String uri : uris) {
try {
names.add(ResourceFactory.createResource(uri).getLocalName());
} catch (Exception e) {
log.warn("Failed to parse URI: " + uri, e);
names.add(uri);
}
}
return names;
}
@Override
public String toString() {
return (label == null) ? super.toString() : label;
}
// ----------------------------------------------------------------------
// DocumentModifier
// ----------------------------------------------------------------------
private static final String LABELS_WITHOUT_RESTRICTION = ""
+ "PREFIX vivo: <http://vivoweb.org/ontology/core#> \n"
+ "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> \n"
+ "SELECT ?label \n" //
+ "WHERE { \n" //
+ " ?uri vivo:relatedBy ?contextNode . \n" //
+ " ?contextNode vivo:relates ?partner . \n" //
+ " ?partner rdfs:label ?label . \n" //
+ " FILTER( ?uri != ?partner ) \n" //
+ "} \n";
private static final String LABELS_FOR_SPECIFIC_CONTEXT_NODE_TYPE = ""
+ "PREFIX vivo: <http://vivoweb.org/ontology/core#> \n"
+ "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> \n"
+ "SELECT ?label \n" //
+ "WHERE { \n" //
+ " ?uri vivo:relatedBy ?contextNode . \n" //
+ " ?contextNode a ?nodeType . \n" //
+ " ?contextNode vivo:relates ?partner . \n" //
+ " ?partner rdfs:label ?label . \n" //
+ " FILTER( ?uri != ?partner ) \n" //
+ "} \n";
/**
* If this individual is acceptable, locate the labels of any context
* partners across acceptable context nodes. Add those labels to the text
* fields of the search document.
*/
@Override
public void modifyDocument(Individual ind, SearchInputDocument doc) {
if (passesTypeRestriction(ind)) {
if (contextNodeClasses.isEmpty()) {
addLabelsFromAllContextNodeClasses(ind, doc);
} else {
for (String contextNodeClass : contextNodeClasses) {
addLabelsFromContextNodeClass(ind, doc, contextNodeClass);
}
}
}
}
private boolean passesTypeRestriction(Individual ind) {
if (typeRestrictions.isEmpty()) {
return true;
} else {
for (VClass type : ind.getVClasses()) {
if (typeRestrictions.contains(type.getURI())) {
return true;
}
}
}
return false;
}
private void addLabelsFromAllContextNodeClasses(Individual ind,
SearchInputDocument doc) {
addValuesToTextFields(doc,
createQueryContext(rdfService, LABELS_WITHOUT_RESTRICTION)
.bindVariableToUri("uri", ind.getURI()).execute()
.getStringFields("label").flatten());
}
private void addLabelsFromContextNodeClass(Individual ind,
SearchInputDocument doc, String contextNodeClass) {
addValuesToTextFields(
doc,
createQueryContext(rdfService,
LABELS_FOR_SPECIFIC_CONTEXT_NODE_TYPE)
.bindVariableToUri("uri", ind.getURI())
.bindVariableToUri("nodeType", contextNodeClass)
.execute().getStringFields("label").flatten());
}
private void addValuesToTextFields(SearchInputDocument doc,
List<String> values) {
for (String value : values) {
doc.addField(ALLTEXT, value);
doc.addField(ALLTEXTUNSTEMMED, value);
}
}
@Override
public void shutdown() {
// Nothing to shut down.
}
// ----------------------------------------------------------------------
// IndexingUriFinder
// ----------------------------------------------------------------------
private static final String URI_VIVO_RELATES = "http://vivoweb.org/ontology/core#relates";
private static final String LOCATE_PARTNERS_WITHOUT_RESTRICTION = ""
+ "PREFIX vivo: <http://vivoweb.org/ontology/core#> \n"
+ "SELECT ?partner \n" //
+ "WHERE { \n" //
+ " ?uri vivo:relatedBy ?contextNode . \n" //
+ " ?contextNode vivo:relates ?partner . \n" //
+ " FILTER( ?uri != ?partner ) \n" //
+ "} \n";
private static final String LOCATE_PARTNERS_ON_CONTEXT_NODE_TYPE = ""
+ "PREFIX vivo: <http://vivoweb.org/ontology/core#> \n"
+ "SELECT ?partner \n" //
+ "WHERE { \n" //
+ " ?uri vivo:relatedBy ?contextNode . \n" //
+ " ?contextNode vivo:relates ?partner . \n" //
+ " ?contextNode a ?nodeType . \n" //
+ " FILTER( ?uri != ?partner ) \n" //
+ "} \n";
private static final String LOCATE_OTHER_PARTNERS_ON_THIS_NODE = ""
+ "PREFIX vivo: <http://vivoweb.org/ontology/core#> \n"
+ "SELECT ?partner \n" //
+ "WHERE { \n" //
+ " ?contextNode vivo:relates ?partner . \n" //
+ " FILTER( ?uri != ?partner ) \n" //
+ "} \n";
private static final String GET_TYPES = "" //
+ "SELECT ?type \n" //
+ "WHERE { \n" //
+ " ?uri a ?type . \n" //
+ "} \n";
@Override
public void startIndexing() {
// Nothing to do.
}
/**
* If this is a "label" statement, check to see if the subject has any
* acceptable partners across acceptable context nodes.
*
* If this is a "relates" statement on an acceptable context node, check to
* see if there are any other acceptable partners on this node.
*
* We could also check for "relatedBy" statements, but they should happen in
* pairs with the "relates" statements.
*/
@Override
public List<String> findAdditionalURIsToIndex(Statement stmt) {
if (isLabelStatement(stmt)) {
return filterByType(locatePartners(stmt));
} else if (isRelatesStatementOnAcceptableContextNode(stmt)) {
return filterByType(locateOtherPartners(stmt));
}
return Collections.emptyList();
}
private boolean isLabelStatement(Statement stmt) {
return RDFS.label.getURI().equals(stmt.getPredicate().getURI());
}
private Set<String> locatePartners(Statement stmt) {
String uri = stmt.getSubject().getURI();
if (contextNodeClasses.isEmpty()) {
return locatePartnersWithoutRestriction(uri);
} else {
Set<String> uris = new HashSet<>();
for (String contextNodeClass : contextNodeClasses) {
uris.addAll(locatePartnersAcrossContextNodeClass(uri,
contextNodeClass));
}
return uris;
}
}
private Set<String> locatePartnersWithoutRestriction(String uri) {
return createQueryContext(rdfService,
LOCATE_PARTNERS_WITHOUT_RESTRICTION)
.bindVariableToUri("uri", uri).execute()
.getStringFields("partner").flattenToSet();
}
private Collection<? extends String> locatePartnersAcrossContextNodeClass(
String uri, String contextNodeClass) {
return createQueryContext(rdfService,
LOCATE_PARTNERS_ON_CONTEXT_NODE_TYPE)
.bindVariableToUri("uri", uri)
.bindVariableToUri("nodeType", contextNodeClass).execute()
.getStringFields("partner").flattenToSet();
}
private boolean isRelatesStatementOnAcceptableContextNode(Statement stmt) {
String subjectUri = stmt.getSubject().getURI();
String predicateUri = stmt.getPredicate().getURI();
if (URI_VIVO_RELATES.equals(predicateUri)
&& (contextNodeClasses.isEmpty() || isAnyMatch(
contextNodeClasses, getTypes(subjectUri)))) {
return true;
} else {
return false;
}
}
private boolean isAnyMatch(Set<String> set1, Set<String> set2) {
Set<String> matches = new HashSet<>(set1);
matches.retainAll(set2);
return !matches.isEmpty();
}
private Set<String> getTypes(String uri) {
return createQueryContext(rdfService, GET_TYPES)
.bindVariableToUri("uri", uri).execute()
.getStringFields("type").flattenToSet();
}
private Set<String> locateOtherPartners(Statement stmt) {
if (!stmt.getSubject().isURIResource()) {
return Collections.emptySet();
}
String nodeUri = stmt.getSubject().getURI();
String objectUri = (stmt.getObject().isURIResource()) ? stmt
.getObject().asResource().getURI() : "NO_MATCH";
return createQueryContext(rdfService,
LOCATE_OTHER_PARTNERS_ON_THIS_NODE)
.bindVariableToUri("contextNode", nodeUri)
.bindVariableToUri("uri", objectUri).execute()
.getStringFields("partner").flattenToSet();
}
private List<String> filterByType(Collection<String> uris) {
if (typeRestrictions.isEmpty()) {
return new ArrayList<>(uris);
} else {
List<String> filtered = new ArrayList<>();
for (String uri : uris) {
if (isAnyMatch(typeRestrictions, getTypes(uri))) {
filtered.add(uri);
}
}
return filtered;
}
}
@Override
public void endIndexing() {
// Nothing to do.
}
}

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src/edu/cornell/mannlib/vitro/webapp/searchindex/indexing/AdditionalURIsForContextNodes.java
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/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.searchindex.indexing;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashSet;
import java.util.Iterator;
import java.util.List;
import java.util.Set;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import com.hp.hpl.jena.query.QuerySolution;
import com.hp.hpl.jena.query.QuerySolutionMap;
import com.hp.hpl.jena.query.ResultSet;
import com.hp.hpl.jena.rdf.model.RDFNode;
import com.hp.hpl.jena.rdf.model.Resource;
import com.hp.hpl.jena.rdf.model.ResourceFactory;
import com.hp.hpl.jena.rdf.model.Statement;
import edu.cornell.mannlib.vitro.webapp.dao.jena.QueryUtils;
import edu.cornell.mannlib.vitro.webapp.modelaccess.ContextModelAccess;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.utils.configuration.ContextModelsUser;
public class AdditionalURIsForContextNodes implements IndexingUriFinder, ContextModelsUser {
private Log log = LogFactory.getLog(AdditionalURIsForContextNodes.class);
private static final List<String> multiValuedQueriesForAgent = new ArrayList<String>();
private static final String multiValuedQueryForInformationContentEntity;
private static final List<String> multiValuedQueriesForRole = new ArrayList<String>();
private static final List<String>queryList;
private final Set<String> alreadyChecked = Collections.synchronizedSet(new HashSet<String>());
private volatile RDFService rdfService;
@Override
public void setContextModels(ContextModelAccess models) {
this.rdfService = models.getRDFService();
}
@Override
public List<String> findAdditionalURIsToIndex(Statement stmt) {
if( stmt != null ){
List<String>urisToIndex = new ArrayList<String>();
if(stmt.getSubject() != null && stmt.getSubject().isURIResource() ){
String subjUri = stmt.getSubject().getURI();
if( subjUri != null && ! alreadyChecked.contains( subjUri )){
urisToIndex.addAll( findAdditionalURIsToIndex(subjUri));
alreadyChecked.add(subjUri);
}
}
if( stmt.getObject() != null && stmt.getObject().isURIResource() ){
String objUri = stmt.getSubject().getURI();
if( objUri != null && ! alreadyChecked.contains(objUri)){
urisToIndex.addAll( findAdditionalURIsToIndex(objUri));
alreadyChecked.add(objUri);
}
}
return urisToIndex;
}else{
return Collections.emptyList();
}
}
@Override
public void startIndexing() {
alreadyChecked.clear();
}
@Override
public void endIndexing() {
// Nothing to clear
}
protected List<String> findAdditionalURIsToIndex(String uri) {
List<String> uriList = new ArrayList<String>();
for (String query : queryList) {
QuerySolutionMap initialBinding = new QuerySolutionMap();
Resource uriResource = ResourceFactory.createResource(uri);
initialBinding.add("uri", uriResource);
ResultSet results = QueryUtils.getQueryResults(query,
initialBinding, rdfService);
while (results.hasNext()) {
QuerySolution soln = results.nextSolution();
Iterator<String> iter = soln.varNames();
while (iter.hasNext()) {
String name = iter.next();
RDFNode node = soln.get(name);
if (node != null) {
uriList.add("" + node.toString());
} else {
log.debug(name + " is null");
}
}
}
}
if( log.isDebugEnabled() )
log.debug( "additional uris for " + uri + " are " + uriList);
return uriList;
}
private static final String prefix = "prefix owl: <http://www.w3.org/2002/07/owl#> \n"
+ " prefix vitroDisplay: <http://vitro.mannlib.cornell.edu/ontologies/display/1.1#> \n"
+ " prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> \n"
+ " prefix core: <http://vivoweb.org/ontology/core#> \n"
+ " prefix foaf: <http://xmlns.com/foaf/0.1/> \n"
+ " prefix obo: <http://purl.obolibrary.org/obo/> \n"
+ " prefix vcard: <http://www.w3.org/2006/vcard/ns#> \n"
+ " prefix event: <http://purl.org/NET/c4dm/event.owl#> \n"
+ " prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> \n"
+ " prefix localNav: <http://vitro.mannlib.cornell.edu/ns/localnav#> \n"
+ " prefix bibo: <http://purl.org/ontology/bibo/> \n";
static{
// If a person changes then update
// organizations for positions
multiValuedQueriesForAgent.add(prefix +
"SELECT DISTINCT \n" +
" (str(?i) as ?positionInOrganization) \n" +
" WHERE {\n"
+ "?uri rdf:type foaf:Agent ; core:relatedBy ?c . \n"
+ " ?c rdf:type core:Position . \n"
+ " OPTIONAL { ?c core:relates ?i . ?i rdf:type foaf:Organization } . \n"
+ " }");
// If a person changes then update
// advisee, linkedAuthor and informationResource
multiValuedQueriesForAgent.add(prefix +
"SELECT (str(?d) as ?advisee) \n" +
" (str(?f) as ?linkedAuthor) (str(?h) as ?linkedInformationResource) WHERE { {\n"
+ "?uri rdf:type foaf:Agent . \n"
+ "?uri core:relatedBy ?c . \n"
+ "?c rdf:type core:AdvisingRelationship . \n"
+ "?c core:relates ?d . \n"
+ "?d rdf:type core:AdviseeRole . \n"
+ "?d obo:RO_0000052 ?e . \n"
+ "?e rdf:type foaf:Person . \n"
+ "} \n"
+ "UNION { \n"
+ " ?uri rdf:type foaf:Agent . \n"
+ " ?uri core:relatedBy ?c . \n"
+ " ?c rdf:type core:Authorship . \n"
+ " OPTIONAL {?c core:relates ?f . \n"
+ " ?f rdf:type foaf:Person . } \n"
+ " OPTIONAL { ?c core:relates ?h . \n"
+ " ?h rdf:type obo:IAO_0000030 . } \n"
+ " } } ");
// If a person changes then update
// award giver
multiValuedQueriesForAgent.add(prefix +
"SELECT (str(?d) as ?awardConferredBy) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Agent ; ?b ?c . \n"
+ " ?c rdf:type core:AwardReceipt . \n"
+ " OPTIONAL { ?c core:assignedBy ?d . } . \n"
+ " }");
// If a person changes then update
// organization for role
multiValuedQueriesForAgent.add(prefix +
"SELECT (str(?Organization) as ?organization) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Agent ; ?b ?c . \n"
+ " ?c rdf:type obo:BFO_0000023 ; obo:BFO_0000054 ?Organization .\n"
+ " }");
// If a person changes then update
// organization in educational training
multiValuedQueriesForAgent.add(prefix +
"SELECT \n" +
"(str(?e) as ?trainingAtOrganization) WHERE {\n"
+ " ?uri rdf:type foaf:Agent ; ?b ?c . \n"
+ " ?c rdf:type core:EducationalProcess . \n"
+ " OPTIONAL { ?c obo:RO_0000057 ?e . \n"
+ " ?e rdf:type foaf:Organization . } . "
+"}");
// If an organization changes then update
// people in head of relations
multiValuedQueriesForAgent.add(
" # for organization, get leader \n" +
prefix +
"SELECT \n" +
"(str(?e) as ?LeaderPerson ) WHERE {\n"
+ " ?uri rdf:type foaf:Agent . \n"
+ " ?uri core:contributingRole ?c . \n"
+ " ?c rdf:type core:LeaderRole . \n"
+ " OPTIONAL { ?c obo:RO_0000052 ?e . \n"
+ " ?e rdf:type foaf:Person . } . "
+"}");
}
//multivalued query for obo:IAO_0000030 (Information Content Entity)
static {
multiValuedQueryForInformationContentEntity = prefix +
"SELECT (str(?b) as ?linkedAuthor) (str(?d) as ?linkedInformationResource) \n"
+ "(str(?f) as ?editor) \n" +
"(str(?i) as ?features) WHERE {\n"
+ " ?uri rdf:type obo:IAO_0000030 . \n"
+ " OPTIONAL { ?uri core:relatedBy ?a . \n"
+ " ?a rdf:type core:Authorship . \n"
+ " ?a core:relates ?b . ?b rdf:type foaf:Person .\n"
+ " ?a core:relates ?d . ?d rdf:type obo:IAO_0000030 .\n"
+ "} . "
+ " OPTIONAL { ?uri core:relatedBy ?e . \n"
+ " ?e rdf:type core:Editorship . \n"
+ " ?e core:relates ?f . ?f rdf:type foaf:Person .\n"
+ "} . "
+ " OPTIONAL { ?uri core:features ?i . } . \n"
+"}" ;
}
protected static List<String> queriesForAuthorship(){
List<String> queries = new ArrayList<String>();
//get additional URIs of information resources from author side
queries.add(
prefix
+ "SELECT (str(?a) as ?infoResource) WHERE {\n"
+ " ?uri rdf:type foaf:Person . \n"
+ " ?uri core:relatedBy ?aship .\n"
+ " ?aship rdf:type core:Authorship .\n"
+ "OPTIONAL { ?aship core:relates ?a . ?a rdf:type obo:IAO_0000030 } .\n"
+"}" );
//get additional URIs of authors from information resource side
queries.add(
prefix
+ "SELECT (str(?a) as ?author ) WHERE {\n"
+ " ?uri rdf:type obo:IAO_0000030 . \n"
+ " ?uri core:relatedBy ?aship . ?aship rdf:type core:Authorship . \n"
+ "OPTIONAL { ?aship core:relates ?a . ?a rdf:type foaf:Person } .\n"
+"}" );
return queries;
}
protected static List<String> queriesForURLLink(){
List<String> queries = new ArrayList<String>();
//get additional URIs when URLLink is changed
queries.add(
prefix
+ "SELECT (str(?x) as ?individual) WHERE {\n"
+ " ?i rdf:type vcard:Individual . \n"
+ " ?i vcard:hasURL ?uri . \n"
+ " ?i obo:ARG_2000029 ?x . \n"
+"}" );
return queries;
}
protected static List<String> queriesForEducationalTraining(){
List<String> queries = new ArrayList<String>();
//if person changes, no additional URIs need to be
//changed because the person is not displayed on the
//degree individual or on the degree granting organization
//if the degree changes, the person needs to be updated
//since the degree name is shown on the person page.
queries.add(
prefix
+ " SELECT (str(?person) as ?personUri) WHERE {\n"
+ " ?uri rdf:type core:AcademicDegree . \n"
+ " ?uri core:relatedBy ?awardedDegree .\n"
+ " ?awardedDegree rdf:type core:AwardedDegree .\n"
+ " ?awardedDegree core:relates ?person .\n"
+ " ?person rdf:type foaf:Person .\n"
+"}" );
//if the organization changes the person needs to be updated
//since the organization name is shown on the person page.
queries.add(
prefix
+ " SELECT (str(?person) as ?personUri) WHERE {\n"
+ " ?uri rdf:type foaf:Organization . \n"
+ " ?uri obo:RO_0000056 ?edTrainingNode .\n"
+ " ?edTrainingNode rdf:type core:EducationalProcess . \n"
+ " ?edTrainingNode obo:RO_0000057 ?person . \n"
+ " ?person rdf:type foaf:Person ."
+"}" );
return queries;
}
protected static List<String> queriesForPosition(){
List<String> queries = new ArrayList<String>();
//If an organization changes, update people
queries.add(
prefix
+ " SELECT (str(?person) as ?personUri) WHERE {\n"
+ " ?uri rdf:type foaf:Organization . \n"
+ " ?uri core:relatedBy ?positionNode .\n"
+ " ?positionNode rdf:type core:Position .\n"
+ " ?positionNode core:relates ?person . \n"
+ " ?person rdf:type foaf:Person .\n"
+"}" );
//if people change, update organizations
queries.add(
prefix
+ " SELECT (str(?org) as ?orgUri) WHERE {\n"
+ " ?uri rdf:type foaf:Person . \n"
+ " ?uri core:relatedBy ?positionNode .\n"
+ " ?positionNode rdf:type core:Position .\n"
+ " ?positionNode core:relates ?org . \n"
+ " ?org rdf:type foaf:Organization .\n"
+"}" );
return queries;
}
static{
// core:AttendeeRole
// If the person changes, update the attendee role in organization
// core:AttendeeRole applies to events, not organizations; updating accordingly - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?event) \n " +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ "?c rdf:type core:AttendeeRole . \n"
+ "?c obo:BFO_0000054 ?d . \n"
+ "?d rdf:type event:Event .\n"
+ " }");
// If the organization changes, update the attendee role of person
// core:AttendeeRole applies to events, not organizations; updating accordingly - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type event:Event . \n"
+ "?uri obo:BFO_0000055 ?c . \n"
+ "?c rdf:type core:AttendeeRole . \n"
+ "?c obo:RO_0000052 ?d . \n"
+ "?d rdf:type foaf:Person .\n"
+ " }");
// core:ClinicalRole -- core:clinicalRoleOf
// If the person changes, update the clinical role in project
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?project) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ "?c rdf:type core:ClinicalRole . \n"
+ "?c obo:BFO_0000054 ?d .\n"
+ "?d rdf:type core:Project .\n"
+ " }");
// If the person changes, update the clinical role in service
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?service) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ "?c rdf:type core:ClinicalRole . \n"
+ "?c core:roleContributesTo ?d .\n"
+ "?d rdf:type obo:ERO_0000005 .\n"
+ " }");
// If the project changes, update the clinical role of person
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Project . \n"
+ "?uri obo:BFO_0000055 ?c . \n"
+ "?c rdf:type core:ClinicalRole . \n"
+ "?c obo:RO_0000052 ?d .\n "
+ "?d rdf:type foaf:Person .\n "
+ " }");
// If the service changes, update the clinical role of person
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type obo:ERO_0000005 . \n"
+ "?uri core:contributingRole ?c . \n"
+ "?c rdf:type core:ClinicalRole . \n"
+ "?c obo:RO_0000052 ?d .\n "
+ "?d rdf:type foaf:Person .\n "
+ " }");
// If the person changes, update the leader role in organization
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ "?c rdf:type core:LeaderRole . \n"
+ "?c core:roleContributesTo ?d .\n"
+ "?d rdf:type foaf:Organization .\n "
+ " }");
// If the organization changes, update the leader role of person
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Organization . \n"
+ "?uri core:contributingRole ?c . \n"
+ "?c rdf:type core:LeaderRole . \n"
+ "?c obo:RO_0000052 ?d .\n "
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:MemberRole -- core:memberRoleOf
// If the person changes, update the member role in organization
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n" +
"WHERE \n{"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ "?c rdf:type core:MemberRole . \n"
+ "?c core:roleContributesTo ?d .\n"
+ "?d rdf:type foaf:Organization .\n "
+ " }");
// If the organization changes, update the member role of person
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {"
+ "?uri rdf:type foaf:Organization . \n"
+ "?uri core:contributingRole ?c . \n"
+ "?c rdf:type core:MemberRole . \n"
+ "?c obo:RO_0000052 ?d .\n "
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:OrganizerRole -- core:organizerRoleOf
// If the person changes, update the organizer role in organization
// organizerRole appplies to events not organizations; updating accordingly - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?event) \n" +
"WHERE {"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ "?c rdf:type core:OrganizerRole .\n"
+ "?c obo:BFO_0000054 ?d .\n"
+ "?d rdf:type event:Event .\n "
+ " }");
// If the organization changes, update the organizer role of person
// organizerRole appplies to events not organizations; updating accordingly - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type event:Event . \n"
+ "?uri obo:BFO_0000055 ?c . \n"
+ "?c rdf:type core:OrganizerRole . \n"
+ "?c obo:RO_0000052 ?d .\n "
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:OutreachProviderRole -- core:outreachProviderRoleOf
// If the person changes, update the outreach provider role in organization
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ "?c rdf:type core:OutreachProviderRole .\n"
+ "?c core:roleContributesTo ?d .\n"
+ "?d rdf:type foaf:Organization .\n "
+ " }");
// If the organization changes, update the outreach provider role of person
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Organization . \n"
+ "?uri core:contributingRole ?c . \n"
+ "?c rdf:type core:OutreachProviderRole . \n"
+ "?c obo:RO_0000052 ?d .\n "
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:PresenterRole -- core:presenterRoleOf
// If the person changes, update the presentation
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?presentation) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ " ?c rdf:type core:PresenterRole . \n"
+ " ?c obo:BFO_0000054 ?d .\n"
+ " ?d rdf:type core:Presentation . \n"
+ " }");
// If the presentation changes, update the person
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Presentation . \n"
+ "?uri obo:BFO_0000055 ?c . \n"
+ " ?c rdf:type core:PresenterRole . \n "
+ "?c obo:RO_0000052 ?d .\n "
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:ResearcherRole -- core:researcherRoleOf
// If the person changes, update the grant
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?grant) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ " ?c rdf:type core:ResearcherRole . \n "
+ " ?c core:relatedBy ?d .\n"
+ " ?d rdf:type core:Grant . \n"
+ " }");
// If the grant changes, update the researcher
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Grant . \n"
+ "?uri core:relates ?c . \n"
+ " ?c rdf:type core:ResearcherRole . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
// If the grant changes, update the principal investigator
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Grant . \n"
+ " ?uri core:relates ?c . \n"
+ " ?c rdf:type core:PrincipalInvestigatorRole . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
// If the grant changes, update the co-principal investigator
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Grant . \n"
+ " ?uri core:relates ?c . \n"
+ " ?c rdf:type core:CoPrincipalInvestigatorRole . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
// If the grant changes, update the investigator
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Grant . \n"
+ " ?uri core:relates ?c . \n"
+ " ?c rdf:type core:InvestigatorRole . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
// If the person changes, update the project
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?project) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ " ?c rdf:type core:ResearcherRole . \n "
+ " ?c obo:BFO_0000054 ?d .\n"
+ " ?d rdf:type core:Project . \n"
+ " }");
// If the project changes, update the researcher
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Project . \n"
+ " ?uri obo:BFO_0000055 ?c .\n"
+ " ?c rdf:type core:ResearcherRole . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:EditorRole -- core:editorRoleOf, core:forInformationResource (person, informationresource)
// If the person changes, update the editor role of the info resource
// changing foaf:Organization to info content entity. Org no longer applies here - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?informationResource) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ " ?c rdf:type core:EditorRole . \n "
+ " ?c core:roleContributesTo ?d .\n"
+ "?d rdf:type obo:IAO_0000030 .\n "
+ " }");
// If the info respource changes, update the editor role of person
// changing foaf:Organization to info content entity. Org no longer applies here - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type obo:IAO_0000030 . \n"
+ "?uri core:contributingRole ?c . \n"
+ " ?c rdf:type core:EditorRole . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
// Next two queries are covered by the previous two. Commenting them out - tlw72
// If the person changes, update the information resource associated with editor role
/* multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?informationResource) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person ; ?b ?c . \n"
+ " ?c rdf:type core:EditorRole ; core:forInformationResource ?d .\n"
+ " }");
// If the organization changes, update the information resource associated with editor role
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?informationResource) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Organization ; ?b ?c . \n"
+ " ?c rdf:type core:EditorRole ; core:forInformationResource ?d .\n"
+ " }");
*/
// core:ServiceProviderRole -- core:serviceProviderRoleOf
// If the person changes, update the service provider role in organization
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ " ?c rdf:type obo:ERO_0000012 . \n"
+ " ?c core:roleContributesTo ?d .\n"
+ " ?d rdf:type foaf:Organization .\n "
+ " }");
// If the organization changes, update the service provider role of person
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Organization . \n"
+ "?uri core:contributingRole ?c . \n"
+ " ?c rdf:type obo:ERO_0000012 . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:TeacherRole -- core:teacherRoleOf
// If the person changes, update the teacher role in organization
// updated to make this an Event (e.g., a course) not an organization - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?event) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ " ?c rdf:type core:TeacherRole . \n"
+ " ?c obo:BFO_0000054 ?d .\n"
+ " ?d rdf:type event:Event .\n "
+ " }");
// If the organization changes, update the teacher role of person
// updated to make this an Event (e.g., a course) not an organization - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type event:Event . \n"
+ "?uri obo:BFO_0000055 ?c . \n"
+ " ?c rdf:type core:TeacherRole . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:ReviewerRole -- core:forInformationResource, core:reviewerRoleOf
// core:PeerReviewerRole -- core:forInformationResource, core:reviewerRoleOf
// If the person changes, update the information resource associated with reviewer role
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?informationResource) \n " +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ " ?c rdf:type core:ReviewerRole . \n"
+ " ?c core:roleContributesTo ?d .\n"
+ " ?d rdf:type obo:IAO_0000030 .\n "
+ " }");
// If the organization changes, update the information resource associated with reviewer role
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?informationResource) \n" +
"WHERE {\n"
+ "?uri rdf:type obo:IAO_0000030 . \n"
+ "?uri core:contributingRole ?c . \n"
+ " ?c rdf:type core:ReviewerRole. \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
}
static{
List<String> tmpList = new ArrayList<String>();
tmpList.add(multiValuedQueryForInformationContentEntity);
tmpList.addAll(multiValuedQueriesForAgent);
tmpList.addAll(multiValuedQueriesForRole);
tmpList.addAll( queriesForAuthorship());
tmpList.addAll(queriesForURLLink());
tmpList.addAll(queriesForEducationalTraining());
tmpList.addAll(queriesForPosition());
queryList = Collections.unmodifiableList(tmpList);
}
@Override
public String toString() {
return this.getClass().getSimpleName();
}
}

128
src/edu/cornell/mannlib/vitro/webapp/searchindex/indexing/AdditionalUrisForVCards.java
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@ -1,128 +0,0 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.searchindex.indexing;
import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import com.hp.hpl.jena.query.QuerySolution;
import com.hp.hpl.jena.query.QuerySolutionMap;
import com.hp.hpl.jena.query.ResultSet;
import com.hp.hpl.jena.rdf.model.RDFNode;
import com.hp.hpl.jena.rdf.model.Resource;
import com.hp.hpl.jena.rdf.model.ResourceFactory;
import com.hp.hpl.jena.rdf.model.Statement;
import edu.cornell.mannlib.vitro.webapp.dao.jena.QueryUtils;
import edu.cornell.mannlib.vitro.webapp.modelaccess.ContextModelAccess;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.utils.configuration.ContextModelsUser;
/**
* If the property of a VCard object is changed, we should re-index the owner of
* that VCard.
*/
public class AdditionalUrisForVCards implements IndexingUriFinder, ContextModelsUser {
private static final Log log = LogFactory
.getLog(AdditionalUrisForVCards.class);
private final String QUERY_FOR_RELATED = "" //
+ "prefix vcard: <http://www.w3.org/2006/vcard/ns#> \n"
+ "prefix obo: <http://purl.obolibrary.org/obo/> \n"
+ "SELECT ?uri WHERE { \n"
+ " ?subject a vcard:Identification . \n "
+ " ?contactInfo ?p ?subject . \n "
+ " ?uri obo:ARG_2000028 ?contactInfo . \n " //
+ "}";
private volatile RDFService rdfService;
@Override
public void setContextModels(ContextModelAccess models) {
this.rdfService = models.getRDFService();
}
@Override
public void startIndexing() {
// Nothing to set up.
}
@Override
public List<String> findAdditionalURIsToIndex(Statement stmt) {
if (stmt == null) {
return Collections.emptyList();
}
RDFNode sNode = stmt.getSubject();
if (sNode == null) {
log.warn("subject of modified statement was null.");
return Collections.emptyList();
}
if (!sNode.isURIResource()) {
return Collections.emptyList();
}
Resource subject = sNode.asResource();
String uri = subject.getURI();
if (uri == null) {
log.warn("subject of modified statement had a null URI.");
return Collections.emptyList();
}
return ownersOfVCard(uri);
}
/**
* If the subject of the statement is a vcard:Identification, then we also
* want to index the owner of the vcard:ContactInfo that references this
* vcard:Identification.
*
* vcard:Identification is a superclass of vcard:Name, vcard:Email,
* vcard:Telephone, vcard:Address, and vcard:URL.
*
* @see https://wiki.duraspace.org/display/VIVO/VCard+usage+diagram
*/
private List<String> ownersOfVCard(String subjectUri) {
List<String> additionalUris = new ArrayList<>();
QuerySolutionMap initialBinding = new QuerySolutionMap();
Resource subjectResource = ResourceFactory.createResource(subjectUri);
initialBinding.add("subject", subjectResource);
ResultSet results = QueryUtils.getQueryResults(QUERY_FOR_RELATED,
initialBinding, rdfService);
while (results.hasNext()) {
QuerySolution soln = results.nextSolution();
RDFNode node = soln.get("uri");
if (node != null) {
if (node.isURIResource()) {
additionalUris.add(node.asResource().getURI());
} else {
log.warn("value from query for 'uri'"
+ " was not a URIResource, it was " + node);
}
} else {
log.warn("value for query for 'uri' was null");
}
}
return additionalUris;
}
@Override
public void endIndexing() {
// Nothing to tear down.
}
@Override
public String toString() {
return this.getClass().getSimpleName();
}
}

492
test/edu/cornell/mannlib/vitro/webapp/searchindex/extensions/LabelsAcrossContextNodesTest.java Normal file
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@ -0,0 +1,492 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.searchindex.extensions;
import static com.hp.hpl.jena.rdf.model.ResourceFactory.createPlainLiteral;
import static com.hp.hpl.jena.rdf.model.ResourceFactory.createProperty;
import static com.hp.hpl.jena.rdf.model.ResourceFactory.createResource;
import static com.hp.hpl.jena.rdf.model.ResourceFactory.createStatement;
import static edu.cornell.mannlib.vitro.webapp.modelaccess.ModelAccess.WhichService.CONTENT;
import static edu.cornell.mannlib.vitro.webapp.search.VitroSearchTermNames.ALLTEXT;
import static edu.cornell.mannlib.vitro.webapp.search.VitroSearchTermNames.ALLTEXTUNSTEMMED;
import static org.junit.Assert.*;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collection;
import java.util.Collections;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import org.junit.Before;
import org.junit.Test;
import stubs.edu.cornell.mannlib.vitro.webapp.modelaccess.ContextModelAccessStub;
import com.hp.hpl.jena.rdf.model.Model;
import com.hp.hpl.jena.rdf.model.ModelFactory;
import com.hp.hpl.jena.rdf.model.Property;
import com.hp.hpl.jena.rdf.model.RDFNode;
import com.hp.hpl.jena.rdf.model.Resource;
import com.hp.hpl.jena.rdf.model.Statement;
import com.hp.hpl.jena.vocabulary.RDF;
import com.hp.hpl.jena.vocabulary.RDFS;
import edu.cornell.mannlib.vitro.testing.AbstractTestClass;
import edu.cornell.mannlib.vitro.webapp.beans.Individual;
import edu.cornell.mannlib.vitro.webapp.beans.IndividualImpl;
import edu.cornell.mannlib.vitro.webapp.beans.VClass;
import edu.cornell.mannlib.vitro.webapp.modules.searchEngine.SearchInputDocument;
import edu.cornell.mannlib.vitro.webapp.modules.searchEngine.SearchInputField;
import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
import edu.cornell.mannlib.vitro.webapp.rdfservice.impl.jena.model.RDFServiceModel;
/**
* TODO
*/
public class LabelsAcrossContextNodesTest extends AbstractTestClass {
// Types
private static final String CORE_ACADEMIC_DEGREE = "http://vivoweb.org/ontology/core#AcademicDegree";
private static final String CORE_ADVISING_RELATIONSHIP = "http://vivoweb.org/ontology/core#AdvisingRelationship";
private static final String CORE_POSITION = "http://vivoweb.org/ontology/core#Position";
private static final String FOAF_PERSON = "http://xmlns.com/foaf/0.1/#Person";
private static final String FOAF_ORGANIZATION = "http://xmlns.com/foaf/0.1/#Organization";
// Individuals
// Note: Person3 has no label and so no effect, but doesn't cause a problem.
private static final String URI_PERSON1 = "http://ns#Person1";
private static final String NAME_PERSON1 = "Person1";
private static final String URI_PERSON2 = "http://ns#Person2";
private static final String NAME_PERSON2 = "Person2";
private static final String URI_PERSON3 = "http://ns#Person3";
private static final String NAME_PERSON3 = null;
private static final String URI_PERSON4 = "http://ns#Person4";
private static final String NAME_PERSON4 = "Person4";
private static final String URI_ORGANIZATION1 = "http://ns#Organization1";
private static final String NAME_ORGANIZATION1 = "Organization1";
// Context nodes
private static final String URI_POSITION1 = "http://ns#Position1";
private static final String NAME_POSITION1 = "Position1";
private static final String URI_POSITION2 = "http://ns#Position2";
private static final String NAME_POSITION2 = "Position2";
private static final String URI_ADVISING1 = "http://ns#Advising1";
private static final String NAME_ADVISING1 = "Advising1";
private static final String URI_ADVISING2 = "http://ns#Advising2";
private static final String NAME_ADVISING2 = "Advising2";
// Properties
private static final String CORE_RELATED_BY = "http://vivoweb.org/ontology/core#relatedBy";
private static final String CORE_RELATES = "http://vivoweb.org/ontology/core#relates";
private static final String CORE_ASSIGNED_BY = "http://vivoweb.org/ontology/core#assignedBy";
private Model m;
private RDFService rdfService;
private LabelsAcrossContextNodes lacn;
private MockSearchInputDocument doc;
private List<String> foundUris;
/**
* Create these relationships (where "r/r" denotes "relatedBy/relates"
* combination.
*
* <pre>
* Person1 r/r Position1 r/r Organization1
* Person1 r/r AdvisingRelationship1 r/r Person2
* Person1 r/r AdvisingRelationship2 r/r Person3(no label!)
* Person2 r/r Position2 r/r Organization1
* Person4
* </pre>
*/
@Before
public void populateModel() {
m = ModelFactory.createDefaultModel();
addIndividual(URI_PERSON1, NAME_PERSON1, FOAF_PERSON);
addIndividual(URI_PERSON2, NAME_PERSON2, FOAF_PERSON);
addIndividual(URI_PERSON3, NAME_PERSON3, FOAF_PERSON);
addIndividual(URI_PERSON4, NAME_PERSON4, FOAF_PERSON);
addIndividual(URI_ORGANIZATION1, NAME_ORGANIZATION1, FOAF_ORGANIZATION);
addIndividual(URI_POSITION1, NAME_POSITION1, CORE_POSITION);
addIndividual(URI_POSITION2, NAME_POSITION2, CORE_POSITION);
addIndividual(URI_ADVISING1, NAME_ADVISING1, CORE_ADVISING_RELATIONSHIP);
addIndividual(URI_ADVISING2, NAME_ADVISING2, CORE_ADVISING_RELATIONSHIP);
addRelationship(URI_PERSON1, URI_POSITION1, URI_ORGANIZATION1);
addRelationship(URI_PERSON1, URI_ADVISING1, URI_PERSON2);
addRelationship(URI_PERSON1, URI_ADVISING2, URI_PERSON3);
addRelationship(URI_PERSON2, URI_POSITION2, URI_ORGANIZATION1);
rdfService = new RDFServiceModel(m);
ContextModelAccessStub models = new ContextModelAccessStub();
models.setRDFService(CONTENT, rdfService);
lacn = new LabelsAcrossContextNodes();
lacn.setContextModels(models);
}
// ----------------------------------------------------------------------
// Test DocumentModifier
// ----------------------------------------------------------------------
/*
* If there is a type restriction and the individual does not meet it, no
* change.
*
* If contextNodeClasses are not specified, get labels from all context
* nodes. note that a partner without a label should just be a no-op.
*
* If contextNodeClasses are specified, accept some and ignore others.
*
* Confirm that the expected data is written to the text fields.
*/
@Test
public void noRestrictions_returnLabelsOfAllPartners() {
setTypeRestrictions();
setContextNodeTypes();
exerciseDocumentModifier(URI_PERSON1);
assertExpectedFieldValues(NAME_ORGANIZATION1, NAME_PERSON2);
}
@Test
public void typeRestrictionOnCorrectType_returnAll() {
setTypeRestrictions(FOAF_PERSON);
setContextNodeTypes();
exerciseDocumentModifier(URI_PERSON1);
assertExpectedFieldValues(NAME_ORGANIZATION1, NAME_PERSON2);
}
@Test
public void typeRestrictionOnWrongType_returnNothing() {
setTypeRestrictions(FOAF_ORGANIZATION);
setContextNodeTypes();
exerciseDocumentModifier(URI_PERSON1);
assertExpectedFieldValues();
}
@Test
public void limitByContextNodeType_returnLimited() {
setTypeRestrictions();
setContextNodeTypes(CORE_POSITION);
exerciseDocumentModifier(URI_PERSON1);
assertExpectedFieldValues(NAME_ORGANIZATION1);
}
@Test
public void inclusiveContextNodeTypes_returnAll() {
setTypeRestrictions();
setContextNodeTypes(CORE_POSITION, CORE_ADVISING_RELATIONSHIP);
exerciseDocumentModifier(URI_PERSON1);
assertExpectedFieldValues(NAME_ORGANIZATION1, NAME_PERSON2);
}
@Test
public void noContextNodes_noResultsNoProblem() {
setTypeRestrictions();
setContextNodeTypes();
exerciseDocumentModifier(URI_PERSON4);
assertExpectedFieldValues();
}
// ----------------------------------------------------------------------
// Test IndexingUriFinder
// ----------------------------------------------------------------------
/**
* <pre>
* If neither a label nor a relates, ignore it.
*
* If label, test if no partners, if some partners, if some partners restricted by type.
* test with both contextNodeClasses and not.
* Test with typeRestrictions or without.
*
* If relates, and fails contextNodeClasses, ignore it.
* Test with contextNodeClasses and without.
* Find partners, both with typeRestrictions and without.
* </pre>
*/
@Test
public void irrelevantStatement_returnsNothing() {
setTypeRestrictions();
setContextNodeTypes();
exerciseUriFinder(stmt(URI_POSITION1, CORE_ASSIGNED_BY, URI_PERSON4));
assertExpectedUris();
}
@Test
public void label_noPartners_returnsNothing() {
setTypeRestrictions();
setContextNodeTypes();
exerciseUriFinder(labelStmt(URI_PERSON4, "New Name"));
assertExpectedUris();
}
@Test
public void label_returnsAllPartners() {
setTypeRestrictions();
setContextNodeTypes();
exerciseUriFinder(labelStmt(URI_PERSON1, "New Name"));
assertExpectedUris(URI_PERSON2, URI_PERSON3, URI_ORGANIZATION1);
}
@Test
public void label_restrictByContextNode_returnEligiblePartners() {
setTypeRestrictions();
setContextNodeTypes(CORE_ADVISING_RELATIONSHIP);
exerciseUriFinder(labelStmt(URI_PERSON1, "New Name"));
assertExpectedUris(URI_PERSON2, URI_PERSON3);
}
@Test
public void label_restrictByContextNodes_returnEligiblePartners() {
setTypeRestrictions();
setContextNodeTypes(CORE_ADVISING_RELATIONSHIP, CORE_POSITION);
exerciseUriFinder(labelStmt(URI_PERSON1, "New Name"));
assertExpectedUris(URI_PERSON2, URI_PERSON3, URI_ORGANIZATION1);
}
@Test
public void label_typeRestriction_limitsResults() {
setTypeRestrictions(FOAF_PERSON);
setContextNodeTypes();
exerciseUriFinder(labelStmt(URI_PERSON1, "New Name"));
assertExpectedUris(URI_PERSON2, URI_PERSON3);
}
@Test
public void label_inclusiveTypeRestrictions_allResults() {
setTypeRestrictions(FOAF_PERSON, FOAF_ORGANIZATION);
setContextNodeTypes();
exerciseUriFinder(labelStmt(URI_PERSON1, "New Name"));
assertExpectedUris(URI_PERSON2, URI_PERSON3, URI_ORGANIZATION1);
}
@Test
public void label_prohibitiveTypeRestrictions_nothing() {
setTypeRestrictions(CORE_ACADEMIC_DEGREE);
setContextNodeTypes();
exerciseUriFinder(labelStmt(URI_PERSON1, "New Name"));
assertExpectedUris();
}
@Test
public void relates_returnsPartner() {
setTypeRestrictions();
setContextNodeTypes();
exerciseUriFinder(stmt(URI_POSITION1, CORE_RELATES, URI_PERSON1));
assertExpectedUris(URI_ORGANIZATION1);
}
@Test
public void relates_inclusiveTypeRestriction_returnsPartner() {
setTypeRestrictions(FOAF_ORGANIZATION);
setContextNodeTypes();
exerciseUriFinder(stmt(URI_POSITION1, CORE_RELATES, URI_PERSON1));
assertExpectedUris(URI_ORGANIZATION1);
}
@Test
public void relates_exclusiveTypeRestriction_returnsNothing() {
setTypeRestrictions(CORE_ADVISING_RELATIONSHIP);
setContextNodeTypes();
exerciseUriFinder(stmt(URI_POSITION1, CORE_RELATES, URI_PERSON1));
assertExpectedUris();
}
@Test
public void relates_inclusiveContextType_returnsPartner() {
setTypeRestrictions();
setContextNodeTypes(CORE_POSITION);
exerciseUriFinder(stmt(URI_POSITION1, CORE_RELATES, URI_PERSON1));
assertExpectedUris(URI_ORGANIZATION1);
}
@Test
public void relates_exclusiveContextType_returnsNothing() {
setTypeRestrictions();
setContextNodeTypes(CORE_ADVISING_RELATIONSHIP);
exerciseUriFinder(stmt(URI_POSITION1, CORE_RELATES, URI_PERSON1));
assertExpectedUris();
}
// ----------------------------------------------------------------------
// Helper methods
// ----------------------------------------------------------------------
private void addIndividual(String uri, String label, String... types) {
Resource subject = createResource(uri);
if (label != null) {
m.add(subject, RDFS.label, label);
}
for (String type : types) {
m.add(subject, RDF.type, createResource(type));
}
}
private void addRelationship(String ind1Uri, String contextNodeUri,
String ind2Uri) {
Resource ind1 = createResource(ind1Uri);
Resource contextNode = createResource(contextNodeUri);
Resource ind2 = createResource(ind2Uri);
Property relatedBy = createProperty(CORE_RELATED_BY);
Property relates = createProperty(CORE_RELATES);
m.add(ind1, relatedBy, contextNode);
m.add(contextNode, relates, ind1);
m.add(ind2, relatedBy, contextNode);
m.add(contextNode, relates, ind2);
}
private void setTypeRestrictions(String... uris) {
for (String uri : uris) {
lacn.addTypeRestriction(uri);
}
}
private void setContextNodeTypes(String... uris) {
for (String uri : uris) {
lacn.addContextNodeClass(uri);
}
}
private void exerciseDocumentModifier(String individualUri) {
Individual ind = createIndividual(individualUri);
doc = new MockSearchInputDocument();
lacn.modifyDocument(ind, doc);
}
private Individual createIndividual(String individualUri) {
Individual ind = new IndividualImpl(individualUri);
List<VClass> vclasses = new ArrayList<>();
for (RDFNode node : m.listObjectsOfProperty(
createResource(individualUri), RDF.type).toList()) {
if (node.isURIResource()) {
vclasses.add(new VClass(node.asResource().getURI()));
}
}
ind.setVClasses(vclasses, false);
return ind;
}
private void assertExpectedFieldValues(String... values) {
List<String> expected = new ArrayList<>(Arrays.asList(values));
Collections.sort(expected);
List<String> actual1 = doc.getValues(ALLTEXT);
Collections.sort(actual1);
assertEquals("ALLTEXT", expected, actual1);
List<String> actual2 = doc.getValues(ALLTEXTUNSTEMMED);
Collections.sort(actual2);
assertEquals("ALLTEXTUNSTEMMED", expected, actual2);
}
private void exerciseUriFinder(Statement stmt) {
foundUris = lacn.findAdditionalURIsToIndex(stmt);
}
private Statement stmt(String subjectUri, String predicateUri,
String objectUri) {
return createStatement(createResource(subjectUri),
createProperty(predicateUri), createResource(objectUri));
}
private Statement labelStmt(String subjectUri, String labelText) {
return createStatement(createResource(subjectUri), RDFS.label,
createPlainLiteral(labelText));
}
private void assertExpectedUris(String... expectedArray) {
Set<String> expected = new HashSet<>(Arrays.asList(expectedArray));
Set<String> actual = new HashSet<>(foundUris);
assertEquals("found URIs", expected, actual);
}
// ----------------------------------------------------------------------
// Helper classes
// ----------------------------------------------------------------------
private static class MockSearchInputDocument implements SearchInputDocument {
// ----------------------------------------------------------------------
// Stub infrastructure
// ----------------------------------------------------------------------
private Map<String, List<String>> fieldValues = new HashMap<>();
public List<String> getValues(String fieldName) {
if (fieldValues.containsKey(fieldName)) {
return new ArrayList<>(fieldValues.get(fieldName));
} else {
return new ArrayList<>();
}
}
// ----------------------------------------------------------------------
// Stub methods
// ----------------------------------------------------------------------
// ----------------------------------------------------------------------
// Un-implemented methods
// ----------------------------------------------------------------------
@Override
public void addField(SearchInputField arg0) {
throw new RuntimeException("addField() not implemented.");
}
@Override
public void addField(String name, Object... values) {
List<String> stringValues = getValues(name);
for (Object value : values) {
stringValues.add(String.valueOf(value));
}
fieldValues.put(name, stringValues);
}
@Override
public void addField(String arg0, Collection<Object> arg1) {
throw new RuntimeException("addField() not implemented.");
}
@Override
public void addField(String arg0, float arg1, Object... arg2) {
throw new RuntimeException("addField() not implemented.");
}
@Override
public void addField(String arg0, float arg1, Collection<Object> arg2) {
throw new RuntimeException("addField() not implemented.");
}
@Override
public SearchInputField createField(String arg0) {
throw new RuntimeException("createField() not implemented.");
}
@Override
public float getDocumentBoost() {
throw new RuntimeException("getDocumentBoost() not implemented.");
}
@Override
public SearchInputField getField(String arg0) {
throw new RuntimeException("getField() not implemented.");
}
@Override
public Map<String, SearchInputField> getFieldMap() {
throw new RuntimeException("getFieldMap() not implemented.");
}
@Override
public void setDocumentBoost(float arg0) {
throw new RuntimeException("setDocumentBoost() not implemented.");
}
}
}

611
test/edu/cornell/mannlib/vitro/webapp/searchindex/indexing/AdditionalURIsForContextNodesTest.java
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@ -1,611 +0,0 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.searchindex.indexing;
import static org.junit.Assert.assertTrue;
import java.io.StringReader;
import java.util.List;
import org.junit.Test;
import stubs.edu.cornell.mannlib.vitro.webapp.modelaccess.ContextModelAccessStub;
import com.hp.hpl.jena.ontology.OntModel;
import com.hp.hpl.jena.rdf.model.ModelFactory;
import edu.cornell.mannlib.vitro.webapp.modelaccess.ModelAccess.WhichService;
import edu.cornell.mannlib.vitro.webapp.rdfservice.impl.jena.model.RDFServiceModel;
public class AdditionalURIsForContextNodesTest {
private AdditionalURIsForContextNodes uriFinder;
@Test
public void testPositionChanges(){
String n3 =
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423> <http://vivoweb.org/ontology/core#relatedBy> <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#AcademicDepartment> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Department> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Organization> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#AcademicDepartment> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#DependentResource> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#DependentResource> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Position> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#FacultyPosition> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> <http://vivoweb.org/ontology/core#relates> <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> <http://vivoweb.org/ontology/core#relates> <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932> <http://vivoweb.org/ontology/core#relatedBy> <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#FacultyMember> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#FacultyMember> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5398> <http://vivoweb.org/ontology/core#start> <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5425> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5398> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#DateTimeInterval> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5398> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5398> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#DateTimeInterval> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5425> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5425> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#DateTimeValue> . \n" +
"<http://vivoweb.org/ontology/core#AcademicDepartment> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . \n" +
"<http://vivoweb.org/ontology/core#Position> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . \n" +
"<http://vivoweb.org/ontology/core#FacultyMember> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . \n" +
"<http://xmlns.com/foaf/0.1/Organization> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . \n" +
"<http://xmlns.com/foaf/0.1/Person> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . \n" +
"<http://xmlns.com/foaf/0.1/Agent> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . \n" +
"<http://vivoweb.org/ontology/core#DateTimeInterval> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . \n" +
"<http://vivoweb.org/ontology/core#Department> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . \n" ;
populateModelAndCreateUriFinder(n3);
//if the person changes then the org needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932");
assertTrue("did not find org for context node", uris.contains("http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423" ));
//if the org changes then the person needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423");
assertTrue("did not find person for context node", uris.contains("http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932" ));
}
@Test
public void testPersonOnOrgChange() {
String n3 ="@prefix dc: <http://purl.org/dc/elements/1.1/> . \n" +
"@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . \n" +
"@prefix swrl: <http://www.w3.org/2003/11/swrl#> . \n" +
"@prefix vitro: <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#> . \n" +
"@prefix xsd: <http://www.w3.org/2001/XMLSchema#> . \n" +
"@prefix swrlb: <http://www.w3.org/2003/11/swrlb#> . \n" +
"@prefix owl: <http://www.w3.org/2002/07/owl#> . \n" +
"@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . \n" +
"@prefix core: <http://vivoweb.org/ontology/core#> . \n" +
"@prefix vivo: <http://vivo.library.cornell.edu/ns/0.1#> . \n" +
"@prefix obo: <http://purl.obolibrary.org/obo/> . \n" +
" " +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2577> \n" +
" a owl:Thing , core:Role , core:LeaderRole ; \n" +
" rdfs:label \"head\"^^xsd:string ; \n" +
" vitro:mostSpecificType \n" +
" core:LeaderRole ; \n" +
" core:dateTimeInterval \n" +
" <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2594> ; \n" +
" obo:RO_0000052 <http://vivo.scripps.edu/individual/n14979> ; \n" +
" core:roleContributesTo <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2592> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2592> \n" +
" a <http://xmlns.com/foaf/0.1/Organization> , owl:Thing , <http://xmlns.com/foaf/0.1/Agent> , core:ClinicalOrganization ; \n" +
" rdfs:label \"Organization XYZ\"^^xsd:string ; \n" +
" vitro:mostSpecificType \n" +
" core:ClinicalOrganization ; \n" +
" core:contributingRole <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2577> . \n" +
" <http://vivo.scripps.edu/individual/n14979> a <http://xmlns.com/foaf/0.1/Person> , owl:Thing , <http://xmlns.com/foaf/0.1/Agent> . \n";
//make a test model with an person, an authorship context node and a book
populateModelAndCreateUriFinder(n3);
//get additional uris for org
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2592");
assertTrue("did not find person for context node", uris.contains("http://vivo.scripps.edu/individual/n14979" ));
}
@Test
public void testLeaderRoleChanges(){
String n3=
"<http://vivo.scripps.edu/individual/n2027> <http://www.w3.org/2000/01/rdf-schema#label> \"1, Test\" . \n " +
// "<http://vivo.scripps.edu/individual/n2027> <http://xmlns.com/foaf/0.1/lastName> \"1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
// "<http://vivo.scripps.edu/individual/n2027> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n2027> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n " +
"<http://vivo.scripps.edu/individual/n2027> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n7067> . \n " +
"<http://vivo.scripps.edu/individual/n2027> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n " +
"<http://vivo.scripps.edu/individual/n2027> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n " +
"<http://vivo.scripps.edu/individual/n2027> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://www.w3.org/2000/01/rdf-schema#label> \"Leader Role\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n2027> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n7083> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://vivoweb.org/ontology/core#roleContributesTo> <http://vivo.scripps.edu/individual/n7080> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#LeaderRole> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#LeaderRole> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n7080> <http://www.w3.org/2000/01/rdf-schema#label> \"University1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n7080> <http://vivoweb.org/ontology/core#contributingRole> <http://vivo.scripps.edu/individual/n7067> . \n " +
"<http://vivo.scripps.edu/individual/n7080> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#University> .\n " +
"<http://vivo.scripps.edu/individual/n7080> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#University> . \n " +
"<http://vivo.scripps.edu/individual/n7080> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n " +
"<http://vivo.scripps.edu/individual/n7080> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n7080> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Organization> . \n " ;
populateModelAndCreateUriFinder(n3);
//if the person changes then the university needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n2027");
assertTrue("did not find org for context node", uris.contains("http://vivo.scripps.edu/individual/n7080" ));
//if the university changes then the person needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n7080");
assertTrue("did not find person for context node", uris.contains("http://vivo.scripps.edu/individual/n2027" ));
}
@Test
public void testMemberRoleChanges(){
String n3 =
"<http://vivo.scripps.edu/individual/n4519> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n6040> . \n " +
"<http://vivo.scripps.edu/individual/n4519> <http://www.w3.org/2000/01/rdf-schema#label> \"2, Test\" . \n " +
// "<http://vivo.scripps.edu/individual/n4519> <http://xmlns.com/foaf/0.1/lastName> \"2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
// "<http://vivo.scripps.edu/individual/n4519> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n4519> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n " +
"<http://vivo.scripps.edu/individual/n4519> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n " +
"<http://vivo.scripps.edu/individual/n4519> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n " +
"<http://vivo.scripps.edu/individual/n4519> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://www.w3.org/2000/01/rdf-schema#label> \"Member Role\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n6031> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://vivoweb.org/ontology/core#roleContributesTo> <http://vivo.scripps.edu/individual/n6004> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#MemberRole> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n4519> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#MemberRole> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n6004> <http://www.w3.org/2000/01/rdf-schema#label> \"University2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n6004> <http://vivoweb.org/ontology/core#contributingRole> <http://vivo.scripps.edu/individual/n6040> . \n " +
"<http://vivo.scripps.edu/individual/n6004> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#University> . \n " +
"<http://vivo.scripps.edu/individual/n6004> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#University> . \n " +
"<http://vivo.scripps.edu/individual/n6004> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n " +
"<http://vivo.scripps.edu/individual/n6004> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n6004> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Organization> . \n " ;
populateModelAndCreateUriFinder(n3);
//if the person changes then the university needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4519");
assertTrue("did not find org for context node", uris.contains("http://vivo.scripps.edu/individual/n6004" ));
//if the university changes then the person needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n6004");
assertTrue("did not find person for context node", uris.contains("http://vivo.scripps.edu/individual/n4519" ));
}
@Test
public void testClinicalRoleChangesForProject(){
String n3 =
"<http://vivo.scripps.edu/individual/n4858> <http://www.w3.org/2000/01/rdf-schema#label> \"3, Test\" . \n" +
// "<http://vivo.scripps.edu/individual/n4858> <http://xmlns.com/foaf/0.1/lastName> \"3\"^^<http://www.w3.org/2001/XMLSchema#string> .\n" +
// "<http://vivo.scripps.edu/individual/n4858> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4858> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n5185> . \n" +
"<http://vivo.scripps.edu/individual/n4858> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n4858> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://vivo.scripps.edu/individual/n4858> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n4858> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n4858> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://www.w3.org/2000/01/rdf-schema#label> \"Clinical Role\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n5180> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://purl.obolibrary.org/obo/BFO_0000054> <http://vivo.scripps.edu/individual/n5177> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#ClinicalRole> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ClinicalRole> . \n" +
"<http://vivo.scripps.edu/individual/n5177> <http://www.w3.org/2000/01/rdf-schema#label> \"Project1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n5177> <http://purl.obolibrary.org/obo/BFO_0000055> <http://vivo.scripps.edu/individual/n5185> . \n" +
"<http://vivo.scripps.edu/individual/n5177> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Project> . \n" +
"<http://vivo.scripps.edu/individual/n5177> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Project> . \n" +
"<http://vivo.scripps.edu/individual/n5177> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n5177> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Process> . \n" ;
populateModelAndCreateUriFinder(n3);
//if the person changes then the project needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4858");
assertTrue("did not find project for clinical role", uris.contains("http://vivo.scripps.edu/individual/n5177" ));
//if the project changes then the person needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n5177");
assertTrue("did not find person for clinical role", uris.contains("http://vivo.scripps.edu/individual/n4858" ));
}
@Test
public void testClinicalRoleChangesForService(){
String n3 =
"<http://vivo.scripps.edu/individual/n5651> <http://www.w3.org/2000/01/rdf-schema#label> \"4, Test\" . \n" +
// "<http://vivo.scripps.edu/individual/n5651> <http://xmlns.com/foaf/0.1/lastName> \"4\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n5651> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n5651> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n4428> . \n" +
"<http://vivo.scripps.edu/individual/n5651> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n5651> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://vivo.scripps.edu/individual/n5651> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n5651> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n5651> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://www.w3.org/2000/01/rdf-schema#label> \"Clinical Role 2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n4444> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://vivoweb.org/ontology/core#roleContributesTo> <http://vivo.scripps.edu/individual/n4442> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#ClinicalRole> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ClinicalRole> . \n" +
"<http://vivo.scripps.edu/individual/n4442> <http://www.w3.org/2000/01/rdf-schema#label> \"Service1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4442> <http://vivoweb.org/ontology/core#contributingRole> <http://vivo.scripps.edu/individual/n4428> . \n" +
"<http://vivo.scripps.edu/individual/n4442> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://purl.obolibrary.org/obo/ERO_0000005> . \n" +
"<http://vivo.scripps.edu/individual/n4442> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n4442> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.obolibrary.org/obo/ERO_0000005> . \n" ;
populateModelAndCreateUriFinder(n3);
//if the person changes then the service needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n5651");
assertTrue("did not find service for clinical role", uris.contains("http://vivo.scripps.edu/individual/n4442" ));
//if the service changes then the person needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4442");
assertTrue("did not find person for clinical role", uris.contains("http://vivo.scripps.edu/individual/n5651" ));
}
@Test
public void testPresenterRoleChangesForPresentation(){
String n3 =
"<http://vivo.scripps.edu/individual/n5596> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n1294> . \n" +
"<http://vivo.scripps.edu/individual/n5596> <http://www.w3.org/2000/01/rdf-schema#label> \"5, Test\" . \n" +
// "<http://vivo.scripps.edu/individual/n5596> <http://xmlns.com/foaf/0.1/lastName> \"5\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n5596> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n5596> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n5596> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://vivo.scripps.edu/individual/n5596> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n5596> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n5596> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://www.w3.org/2000/01/rdf-schema#label> \"Presenter Role\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n1304> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://purl.obolibrary.org/obo/BFO_0000054> <http://vivo.scripps.edu/individual/n1305> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#PresenterRole> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#PresenterRole> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n1305> <http://www.w3.org/2000/01/rdf-schema#label> \"Presentation 1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n1305> <http://purl.obolibrary.org/obo/BFO_0000055> <http://vivo.scripps.edu/individual/n1294> . \n" +
"<http://vivo.scripps.edu/individual/n1305> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Presentation> . \n" +
"<http://vivo.scripps.edu/individual/n1305> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Presentation> . \n" +
"<http://vivo.scripps.edu/individual/n1305> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.org/NET/c4dm/event.owl#Event> . \n" +
"<http://vivo.scripps.edu/individual/n1305> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" ;
populateModelAndCreateUriFinder(n3);
//if the person changes then the presentation needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n5596");
assertTrue("did not find service for clinical role", uris.contains("http://vivo.scripps.edu/individual/n1305" ));
//if the presentation changes then the person needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n1305");
assertTrue("did not find person for clinical role", uris.contains("http://vivo.scripps.edu/individual/n5596" ));
}
@Test
public void testPresenterRoleChangesForInvitedTalk(){
String n3 =
"<http://vivo.scripps.edu/individual/n4112> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n4144> . \n " +
"<http://vivo.scripps.edu/individual/n4112> <http://www.w3.org/2000/01/rdf-schema#label> \"6, Test\" . \n " +
// "<http://vivo.scripps.edu/individual/n4112> <http://xmlns.com/foaf/0.1/lastName> \"6\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
// "<http://vivo.scripps.edu/individual/n4112> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n4112> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n " +
"<http://vivo.scripps.edu/individual/n4112> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n " +
"<http://vivo.scripps.edu/individual/n4112> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n " +
"<http://vivo.scripps.edu/individual/n4112> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n4112> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://www.w3.org/2000/01/rdf-schema#label> \"Presenter Role 2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n4136> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://purl.obolibrary.org/obo/BFO_0000054> <http://vivo.scripps.edu/individual/n4107> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#PresenterRole> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#PresenterRole> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n4107> <http://www.w3.org/2000/01/rdf-schema#label> \"Invited Talk 1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n4107> <http://purl.obolibrary.org/obo/BFO_0000055> <http://vivo.scripps.edu/individual/n4144> . \n " +
"<http://vivo.scripps.edu/individual/n4107> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#InvitedTalk> . \n " +
"<http://vivo.scripps.edu/individual/n4107> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Presentation> . \n " +
"<http://vivo.scripps.edu/individual/n4107> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.org/NET/c4dm/event.owl#Event> . \n " +
"<http://vivo.scripps.edu/individual/n4107> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n4107> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#InvitedTalk> . \n " ;
populateModelAndCreateUriFinder(n3);
//if the person changes then the invited talk needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4112");
assertTrue("did not find invited talk for person", uris.contains("http://vivo.scripps.edu/individual/n4107" ));
//if the invited talk changes then the person needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4107");
assertTrue("did not find person for invited talk", uris.contains("http://vivo.scripps.edu/individual/n4112" ));
}
@Test
public void testResearcherRoleForGrant(){
String n3 =
"<http://vivo.scripps.edu/individual/n4957> <http://www.w3.org/2000/01/rdf-schema#label> \"7, Test\" . \n" +
// "<http://vivo.scripps.edu/individual/n4957> <http://xmlns.com/foaf/0.1/lastName> \"7\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n4957> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4957> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n4288> . \n" +
"<http://vivo.scripps.edu/individual/n4957> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n4957> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://vivo.scripps.edu/individual/n4957> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n4957> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://www.w3.org/2000/01/rdf-schema#label> \"Researcher Role\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n4251> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://vivoweb.org/ontology/core#relatedBy> <http://vivo.scripps.edu/individual/n4252> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#ResearcherRole> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n4957> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ResearcherRole> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n4252> <http://www.w3.org/2000/01/rdf-schema#label> \"Grant1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4252> <http://vivoweb.org/ontology/core#relates> <http://vivo.scripps.edu/individual/n4288> . \n" +
"<http://vivo.scripps.edu/individual/n4252> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Grant> . \n" +
"<http://vivo.scripps.edu/individual/n4252> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Agreement> . \n" +
"<http://vivo.scripps.edu/individual/n4252> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n4252> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Grant> . \n" ;
populateModelAndCreateUriFinder(n3);
//if the person changes then the grant needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4957");
assertTrue("did not find service for clinical role", uris.contains("http://vivo.scripps.edu/individual/n4252" ));
//if the grant changes then the person needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4252");
assertTrue("did not find person for clinical role", uris.contains("http://vivo.scripps.edu/individual/n4957" ));
}
@Test
public void testResearcherRoleForProject(){
String n3 =
"<http://vivo.scripps.edu/individual/n2029> <http://www.w3.org/2000/01/rdf-schema#label> \"8, Test\" . \n " +
// "<http://vivo.scripps.edu/individual/n2029> <http://xmlns.com/foaf/0.1/lastName> \"8\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
// "<http://vivo.scripps.edu/individual/n2029> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n2029> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n556> . \n " +
"<http://vivo.scripps.edu/individual/n2029> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n " +
"<http://vivo.scripps.edu/individual/n2029> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n " +
"<http://vivo.scripps.edu/individual/n2029> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n " +
"<http://vivo.scripps.edu/individual/n2029> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://www.w3.org/2000/01/rdf-schema#label> \"Researcher Role 2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n568> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://purl.obolibrary.org/obo/BFO_0000054> <http://vivo.scripps.edu/individual/n564> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#ResearcherRole> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n2029> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ResearcherRole> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n564> <http://www.w3.org/2000/01/rdf-schema#label> \"Project2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n564> <http://purl.obolibrary.org/obo/BFO_0000055> <http://vivo.scripps.edu/individual/n556> . \n " +
"<http://vivo.scripps.edu/individual/n564> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Project> . \n " +
"<http://vivo.scripps.edu/individual/n564> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Project> . \n " +
"<http://vivo.scripps.edu/individual/n564> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n564> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Process> . \n " ;
populateModelAndCreateUriFinder(n3);
//if the person changes then the project needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n2029");
assertTrue("did not find service for clinical role", uris.contains("http://vivo.scripps.edu/individual/n564" ));
//if the project changes then the person needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n564");
assertTrue("did not find person for clinical role", uris.contains("http://vivo.scripps.edu/individual/n2029" ));
}
@Test
public void testPrincipalInvestigatorRoleChanges(){
String n3 =
"<http://vivo.scripps.edu/individual/n2368> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n1740> . \n" +
"<http://vivo.scripps.edu/individual/n2368> <http://www.w3.org/2000/01/rdf-schema#label> \"8, Test\" . \n" +
// "<http://vivo.scripps.edu/individual/n2368> <http://xmlns.com/foaf/0.1/lastName> \"8\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n2368> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n2368> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n2368> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://vivo.scripps.edu/individual/n2368> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n2368> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n2368> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n1756> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://vivoweb.org/ontology/core#relatedBy> <http://vivo.scripps.edu/individual/n1742> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#PrincipalInvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#PrincipalInvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ResearcherRole> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#InvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n1742> <http://www.w3.org/2000/01/rdf-schema#label> \"Grant 2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n1742> <http://vivoweb.org/ontology/core#relates> <http://vivo.scripps.edu/individual/n1740> . \n" +
"<http://vivo.scripps.edu/individual/n1742> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Grant> . \n" +
"<http://vivo.scripps.edu/individual/n1742> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Agreement> . \n" +
"<http://vivo.scripps.edu/individual/n1742> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n1742> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Grant> . \n" ;
populateModelAndCreateUriFinder(n3);
//if the person changes then the grant needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n2368");
assertTrue("did not find grant for pi", uris.contains("http://vivo.scripps.edu/individual/n1742" ));
//if the grant changes then the person needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n1742");
assertTrue("did not find pi for grant", uris.contains("http://vivo.scripps.edu/individual/n2368" ));
}
@Test
public void testCoPrincipalInvestigatorRoleChanges(){
String n3 =
"<http://vivo.scripps.edu/individual/n1373> <http://www.w3.org/2000/01/rdf-schema#label> \"9, Test\" . \n" +
// "<http://vivo.scripps.edu/individual/n1373> <http://xmlns.com/foaf/0.1/lastName> \"9\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n1373> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n1373> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n1373> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://vivo.scripps.edu/individual/n1373> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n1373> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n1373> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n4928> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n1373> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n4895> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://vivoweb.org/ontology/core#relatedBy> <http://vivo.scripps.edu/individual/n4931> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#CoPrincipalInvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#CoPrincipalInvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ResearcherRole> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#InvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n4931> <http://www.w3.org/2000/01/rdf-schema#label> \"Grant 3\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4931> <http://vivoweb.org/ontology/core#relates> <http://vivo.scripps.edu/individual/n4928> . \n" +
"<http://vivo.scripps.edu/individual/n4931> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Grant> . \n" +
"<http://vivo.scripps.edu/individual/n4931> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Agreement> . \n" +
"<http://vivo.scripps.edu/individual/n4931> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n4931> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Grant> . \n" ;
populateModelAndCreateUriFinder(n3);
//if the copi changes then the grant needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n1373");
assertTrue("did not find grant for co-pi", uris.contains("http://vivo.scripps.edu/individual/n4931" ));
//if the grant changes then the copi needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4931");
assertTrue("did not find co-pi for grant", uris.contains("http://vivo.scripps.edu/individual/n1373" ));
}
@Test
public void testInvestigatorRoleChanges(){
String n3 =
"<http://vivo.scripps.edu/individual/n5282> <http://www.w3.org/2000/01/rdf-schema#label> \"10, Test\" . \n" +
// "<http://vivo.scripps.edu/individual/n5282> <http://xmlns.com/foaf/0.1/lastName> \"10\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n5282> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n5282> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n5282> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://vivo.scripps.edu/individual/n5282> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n5282> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n5282> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n157> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n127> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://vivoweb.org/ontology/core#relatedBy> <http://vivo.scripps.edu/individual/n160> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#InvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n5282> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ResearcherRole> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#InvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n160> <http://www.w3.org/2000/01/rdf-schema#label> \"Grant 4\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n160> <http://vivoweb.org/ontology/core#relates> <http://vivo.scripps.edu/individual/n157> . \n" +
"<http://vivo.scripps.edu/individual/n160> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Grant> . \n" +
"<http://vivo.scripps.edu/individual/n160> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Agreement> . \n" +
"<http://vivo.scripps.edu/individual/n160> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n160> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Grant> . \n" ;
populateModelAndCreateUriFinder(n3);
//if the investigator changes then the grant needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n5282");
assertTrue("did not find grant for investigator", uris.contains("http://vivo.scripps.edu/individual/n160" ));
//if the grant changes then the investigator needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n160");
assertTrue("did not find investigator for grant", uris.contains("http://vivo.scripps.edu/individual/n5282" ));
}
// ----------------------------------------------------------------------
// Helper methods
// ----------------------------------------------------------------------
/**
* Build a Model from this N3 string, and create a URI Finder based on that
* Model.
*/
private void populateModelAndCreateUriFinder(String n3String) {
OntModel model = ModelFactory.createOntologyModel();
model.read(new StringReader(n3String), null, "N3");
ContextModelAccessStub cmas = new ContextModelAccessStub();
cmas.setRDFService(WhichService.CONTENT, new RDFServiceModel(model));
uriFinder = new AdditionalURIsForContextNodes();
uriFinder.setContextModels(cmas);
}
}