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[VIVO-1690] - Remove trailing whitespace throughout project (#126)

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* Remove trailing whitespace throughout project

Resolves: https://jira.duraspace.org/browse/VIVO-1690
** Along with: https://github.com/vivo-project/Vitro/pull/117
This commit is contained in:
Ben 2019-05-03 10:51:00 -06:00 • committed by Andrew Woods
parent 48dcf87199
commit 87092cec9c
685 changed files with 26805 additions and 26805 deletions
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2
webapp/src/main/webapp/WEB-INF/applicationContext.xml
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@ -9,4 +9,4 @@
<context:component-scan base-package="edu.cornell.mannlib" />
<context:component-scan base-package="org.vivoweb" />
</beans>
</beans>

4
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/askUpdated.sparql
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@ -1,5 +1,5 @@
PREFIX vitro: <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vitro: <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
ASK {

2
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/diff.tab.txt
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File diff suppressed because one or more lines are too long

2
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/oldAnnotations/geopolitical-ver1.1-11-18-11-annotations.rdf
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@ -20,7 +20,7 @@
xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:scires="http://vivoweb.org/ontology/scientific-research#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" >
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" >
<rdf:Description rdf:about="http://aims.fao.org/aos/geopolitical.owl#hasCoordinate">
<rdfs:label xml:lang="en-US">hasCoordinate</rdfs:label>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>

2
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/oldAnnotations/isDefinedBy-1.5-annotations.rdf
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@ -22,7 +22,7 @@
xmlns:scires="http://vivoweb.org/ontology/scientific-research#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:swrl="http://www.w3.org/2003/11/swrl#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" >
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" >
<rdf:Description rdf:about="http://www.w3.org/2000/01/rdf-schema#isDefinedBy">
<rdfs:label xml:lang="en-US">is defined by</rdfs:label>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>

2
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/oldAnnotations/vitro-0.7-annotations.rdf
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@ -2,7 +2,7 @@
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:vitro="http://vitro.mannlib.cornell.edu/ns/vitro/0.7#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" >
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" >
<rdf:Description rdf:about="http://vitro.mannlib.cornell.edu/ns/vitro/0.7#moniker">
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#editor"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#editor"/>

2
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/oldAnnotations/vivo-core-1.5-annotations.rdf
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@ -5949,7 +5949,7 @@
<vitro:fullPropertyNameAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>nearestGeographicLocation</vitro:fullPropertyNameAnnot>
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>This relates something to its geographic location, for example, an organization to its geographic location.
>This relates something to its geographic location, for example, an organization to its geographic location.
</vitro:publicDescriptionAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#dateFiled">

2
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/oldVersion/geopolitical.tbox.ver1.1-11-18-11.owl
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@ -13,7 +13,7 @@
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>FAO DISCLAIMER: Information on the FAO Country Profiles portal is provided as and when available. The designations employed and the presentation of information do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations (FAO) concerning the legal status of any country, territory, city or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. FAO makes every effort to ensure, but does not guarantee, the accuracy or completeness of and declines responsibility for any loss, damage, liability or expense suffered which is claimed to result from its use. </rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>Version 1.1 of the ontology includes a structured description of sources (source creator, source identifier by language, and last updated date on source) .
>Version 1.1 of the ontology includes a structured description of sources (source creator, source identifier by language, and last updated date on source) .
</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>FAO's geopolitical ontology version 1.1 was populated with FAO, UN and internationally recognized data sources. </rdfs:comment>

2
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/oldVersion/isDefinedBy-1.5.owl
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@ -18,7 +18,7 @@
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" >
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" >
<rdf:Description rdf:about="http://www.w3.org/2000/01/rdf-schema#isDefinedBy">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
</rdf:Description>

2
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/oldVersion/vivo-bibo-1.5.owl
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@ -1214,7 +1214,7 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi
<owl:DatatypeProperty rdf:about="http://purl.org/ontology/bibo/oclcnum">
<swvs:term_status>stable</swvs:term_status>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>http://info-uri.info/registry/OAIHandler?verb=GetRecord&amp;metadataPrefix=reg&amp;identifier=info:oclcnum/.
>http://info-uri.info/registry/OAIHandler?verb=GetRecord&amp;metadataPrefix=reg&amp;identifier=info:oclcnum/.
bibo has the domain of this property set to the union of Collection and Document.</vitro:descriptionAnnot>

4
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/oldVersion/vivo-fabio-1.5.owl
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@ -29,8 +29,8 @@
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>A verbal or written remark concerning some entity. In written form, a comment is often appended to that entity and termed an annotation. Within computer programs or ontologies, comments are added to enhance human understanding, and are usually prefaced by</vitro:shortDef>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
>A verbal or written remark concerning some entity. In written form, a comment is often appended to that entity and termed an annotation. Within computer programs or ontologies, comments are added to enhance human understanding, and are usually prefaced by a special syntactic symbol that ensures they are ignored during execution of the program.
>A verbal or written remark concerning some entity. In written form, a comment is often appended to that entity and termed an annotation. Within computer programs or ontologies, comments are added to enhance human understanding, and are usually prefaced by a special syntactic symbol that ensures they are ignored during execution of the program.
has super-classes</vitro:descriptionAnnot>
</owl:Class>
<owl:Class rdf:about="http://purl.org/spar/fabio/Erratum">

4
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/AdviseeRole.sparql
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@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {

4
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/AdvisorRole.sparql
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@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {

10
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/Editorship.sparql
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@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
@ -9,12 +9,12 @@ CONSTRUCT {
_:Editorship vivo:relates ?document .
?document vivo:relatedBy _:Editorship .
} WHERE {
{
{
?person vivo:editorOf ?document
} UNION {
?document vivo:editor ?person
FILTER NOT EXISTS { ?person vivo:editorOf ?document }
}
FILTER NOT EXISTS { ?person vivo:editorOf ?document }
}
FILTER NOT EXISTS {
?person vivo:relatedBy ?editorshipNode .
?editorshipNode vivo:relates ?document .

8
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/LeaderRole.sparql
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@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
@ -10,8 +10,8 @@ CONSTRUCT {
?org vivo:contributingRole _:leaderRole .
} WHERE {
{ ?person vivo:currentlyHeadOf ?org }
UNION
{ ?org vivo:currentlyHeadedBy ?person
UNION
{ ?org vivo:currentlyHeadedBy ?person
FILTER NOT EXISTS { ?person vivo:currentlyHeadOf ?org }
}
FILTER NOT EXISTS {

8
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/MemberRole.sparql
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@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
@ -10,8 +10,8 @@ CONSTRUCT {
?org vivo:contributingRole _:memberRole .
} WHERE {
{ ?person vivo:currentMemberOf ?org }
UNION
{ ?org vivo:hasCurrentMember ?person
UNION
{ ?org vivo:hasCurrentMember ?person
FILTER NOT EXISTS { ?person vivo:currentMemberOf ?org }
}
FILTER NOT EXISTS {

4
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/concept.sparql
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@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
CONSTRUCT {

6
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/grant-pre.sparql
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@ -1,10 +1,10 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
?role vivo:relatedBy ?grant .
?grant vivo:relates ?role
?grant vivo:relates ?role
} WHERE {
?role vivo:roleContributesTo ?grant .
{ ?grant a vivo:Grant } UNION { ?grant a vivo:Contract }

8
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/grantAdmin.sparql
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@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
@ -13,8 +13,8 @@ CONSTRUCT {
} WHERE {
{ ?agent vivo:administers ?grant }
UNION
{ ?grant vivo:administeredBy ?agent
FILTER NOT EXISTS { ?agent vivo:administers ?grant }
{ ?grant vivo:administeredBy ?agent
FILTER NOT EXISTS { ?agent vivo:administers ?grant }
}
FILTER NOT EXISTS {
?agent <http://purl.obolibrary.org/obo/RO_0000053> ?adminRoleNode .

6
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/orcid.sparql
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@ -1,11 +1,11 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
CONSTRUCT {
?s vivo:orcidId ?orcidURI .
?orcidURI a owl:Thing .
} WHERE {
?s vivo:orcidId ?orcidString
?s vivo:orcidId ?orcidString
FILTER(isLiteral(?orcidString))
FILTER (regex(str(?orcidString), "^[0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9]-[0-9][0-9][0-9]([0-9]|X)$"))
BIND(IRI(concat("http://orcid.org/", str(?orcidString))) AS ?orcidURI)

6
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/post/Grant.sparql
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@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
@ -9,5 +9,5 @@ CONSTRUCT {
?agent <http://purl.obolibrary.org/obo/RO_0000053> ?role .
?role vivo:relatedBy ?grant .
{ ?grant a vivo:Grant } UNION { ?grant a vivo:Contract }
FILTER NOT EXISTS { ?grant vivo:relates ?agent }
FILTER NOT EXISTS { ?grant vivo:relates ?agent }
}

4
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/post/awardConferred.sparql
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@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {

8
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/post/awardedDegree.sparql
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@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
@ -19,8 +19,8 @@ CONSTRUCT {
?educationalProcess <http://purl.obolibrary.org/obo/RO_0002234> ?degree .
?degree a vivo:AcademicDegree .
OPTIONAL {
?educationalProcess <http://purl.obolibrary.org/obo/RO_0000057> ?org .
?org a foaf:Organization
?educationalProcess <http://purl.obolibrary.org/obo/RO_0000057> ?org .
?org a foaf:Organization
}
FILTER NOT EXISTS {
?educationalProcess <http://purl.obolibrary.org/obo/RO_0002234> ?awardedDegreeNode .

4
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/post/contributingAdvising.sparql
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@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {

14
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard1-0.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {
@ -10,18 +10,18 @@ CONSTRUCT {
_:vcard a v:Individual .
} WHERE {
?s a foaf:Person
FILTER (
FILTER (
EXISTS { ?s foaf:firstName ?firstName } ||
EXISTS { ?s foaf:lastName ?lastName } ||
EXISTS { ?s vivo:middleName ?middleName } ||
EXISTS { ?s vivo:email ?email } ||
EXISTS { ?s vivo:email ?email } ||
EXISTS { ?s vivo:primaryEmail ?primaryEmail } ||
EXISTS { ?s vivo:phoneNumber ?phoneNumber } ||
EXISTS { ?s vivo:primaryPhoneNumber ?primaryPhoneNumber } ||
EXISTS { ?s vivo:faxNumber ?faxNumber } ||
EXISTS { ?s vivo:mailingAddress ?address } ||
EXISTS { ?s vivo:webpage ?webpage } ||
EXISTS { ?s vivo:preferredTitle ?preferredTitle } ||
EXISTS { ?s vivo:preferredTitle ?preferredTitle } ||
EXISTS { ?s bibo:prefixName ?prefixName } ||
EXISTS { ?s bibo:suffixName ?suffixName }
)

12
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard1-1.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
CONSTRUCT {
?s arg:ARG_2000028 _:vcard .
@ -9,8 +9,8 @@ CONSTRUCT {
_:vcard a v:Organization .
} WHERE {
?s a foaf:Organization
FILTER (
EXISTS { ?s vivo:email ?email } ||
FILTER (
EXISTS { ?s vivo:email ?email } ||
EXISTS { ?s vivo:primaryEmail ?primaryEmail } ||
EXISTS { ?s vivo:phoneNumber ?phoneNumber } ||
EXISTS { ?s vivo:primaryPhoneNumber ?primaryPhoneNumber } ||

16
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard1-2.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
CONSTRUCT {
?s arg:ARG_2000028 _:vcard .
@ -9,14 +9,14 @@ CONSTRUCT {
_:vcard a v:Group .
} WHERE {
?s a foaf:Group
FILTER (
EXISTS { ?s vivo:email ?email } ||
FILTER (
EXISTS { ?s vivo:email ?email } ||
EXISTS { ?s vivo:primaryEmail ?primaryEmail } ||
EXISTS { ?s vivo:phoneNumber ?phoneNumber } ||
EXISTS { ?s vivo:primaryPhoneNumber ?primaryPhoneNumber } ||
EXISTS { ?s vivo:faxNumber ?faxNumber } ||
EXISTS { ?s vivo:mailingAddress ?address } ||
EXISTS { ?s vivo:webpage ?webpage }
)
EXISTS { ?s vivo:webpage ?webpage }
)
FILTER NOT EXISTS { ?s arg:ARG_2000028 ?vcardNode }
}

16
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard1-3.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
CONSTRUCT {
@ -10,14 +10,14 @@ CONSTRUCT {
_:vcard a v:Kind .
} WHERE {
?s a owl:Thing
FILTER (
EXISTS { ?s vivo:email ?email } ||
FILTER (
EXISTS { ?s vivo:email ?email } ||
EXISTS { ?s vivo:primaryEmail ?primaryEmail } ||
EXISTS { ?s vivo:phoneNumber ?phoneNumber } ||
EXISTS { ?s vivo:primaryPhoneNumber ?primaryPhoneNumber } ||
EXISTS { ?s vivo:faxNumber ?faxNumber } ||
EXISTS { ?s vivo:mailingAddress ?address } ||
EXISTS { ?s vivo:webpage ?webpage }
)
EXISTS { ?s vivo:webpage ?webpage }
)
FILTER NOT EXISTS { ?s arg:ARG_2000028 ?vcardNode }
}

8
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard22.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {

8
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard2a.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {

8
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard2b.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {

10
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard2c.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {
@ -9,7 +9,7 @@ CONSTRUCT {
_:name a v:Name .
_:name vivo:middleName ?middleName .
} WHERE {
?s vivo:middleName ?middleName .
?s vivo:middleName ?middleName .
?s arg:ARG_2000028 ?vcard .
FILTER NOT EXISTS {
?vcard v:hasName ?name

10
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard2d.sparql
View file

@ -1,13 +1,13 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {
?name vivo:middleName ?middleName .
} WHERE {
?s vivo:middleName ?middleName .
?s vivo:middleName ?middleName .
?s a foaf:Person .
?s arg:ARG_2000028 ?vcard .
?vcard v:hasName ?name

10
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard2e.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {
@ -9,7 +9,7 @@ CONSTRUCT {
_:name a v:Name .
_:name v:familyName ?lastName .
} WHERE {
?s foaf:lastName ?lastName .
?s foaf:lastName ?lastName .
?s arg:ARG_2000028 ?vcard .
FILTER NOT EXISTS {
?vcard v:hasName ?name

10
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard2f.sparql
View file

@ -1,13 +1,13 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {
?name v:familyName ?lastName .
} WHERE {
?s foaf:lastName ?lastName .
?s foaf:lastName ?lastName .
?s arg:ARG_2000028 ?vcard .
?vcard v:hasName ?name
}

10
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard2g.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {
@ -9,7 +9,7 @@ CONSTRUCT {
_:name a v:Name .
_:name v:honorificPrefix ?prefixName .
} WHERE {
?s bibo:prefixName ?prefixName .
?s bibo:prefixName ?prefixName .
?s arg:ARG_2000028 ?vcard .
FILTER NOT EXISTS {
?vcard v:hasName ?name

10
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard2h.sparql
View file

@ -1,13 +1,13 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {
?name v:honorificPrefix ?prefixName .
} WHERE {
?s bibo:prefixName ?prefixName .
?s bibo:prefixName ?prefixName .
?s arg:ARG_2000028 ?vcard .
?vcard v:hasName ?name
}

10
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard2i.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {
@ -9,7 +9,7 @@ CONSTRUCT {
_:name a v:Name .
_:name v:honorificSuffix ?suffixName .
} WHERE {
?s bibo:suffixName ?suffixName .
?s bibo:suffixName ?suffixName .
?s arg:ARG_2000028 ?vcard .
FILTER NOT EXISTS {
?vcard v:hasName ?name

10
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard2j.sparql
View file

@ -1,13 +1,13 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {
?name v:honorificSuffix ?suffixName .
} WHERE {
?s bibo:suffixName ?suffixName .
?s bibo:suffixName ?suffixName .
?s arg:ARG_2000028 ?vcard .
?vcard v:hasName ?name
}

8
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard3.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
CONSTRUCT {
?vcard v:hasEmail _:email .

10
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard4.sparql
View file

@ -1,13 +1,13 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
CONSTRUCT {
?vcard v:hasEmail _:primaryEmail .
_:primaryEmail a v:Email .
_:primaryEmail a v:Work .
_:primaryEmail v:email ?primaryEmail .
_:primaryEmail v:email ?primaryEmail .
} WHERE {
?s vivo:primaryEmail ?primaryEmail .
?s arg:ARG_2000028 ?vcard .

8
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard5.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
CONSTRUCT {
?vcard v:hasTelephone _:telephone .

8
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard6.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
CONSTRUCT {
?vcard v:hasTelephone _:primaryTelephone .

10
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard7.sparql
View file

@ -1,13 +1,13 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
CONSTRUCT {
?vcard v:hasTelephone _:fax .
_:fax a v:Telephone .
_:fax a v:Fax.
_:fax v:telephone ?faxNumber .
_:fax v:telephone ?faxNumber .
} WHERE {
?s vivo:faxNumber ?faxNumber .
?s arg:ARG_2000028 ?vcard .

16
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard8.sparql
View file

@ -1,7 +1,7 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
CONSTRUCT {
?vcard v:hasAddress ?address .
@ -25,18 +25,18 @@ CONSTRUCT {
?address vivo:address1 ?address1 .
?address vivo:address2 ?address2 .
?address vivo:address3 ?address3 .
BIND (CONCAT(?address1, ", ", ?address2, ", ", ?address3) AS ?streetAddress)
}
BIND (CONCAT(?address1, ", ", ?address2, ", ", ?address3) AS ?streetAddress)
}
OPTIONAL {
?address vivo:address1 ?address1 .
?address vivo:address2 ?address2 .
FILTER NOT EXISTS { ?address vivo:address3 ?address3 }
BIND (CONCAT(?address1, ", ", ?address2) AS ?streetAddress)
BIND (CONCAT(?address1, ", ", ?address2) AS ?streetAddress)
}
OPTIONAL {
?address vivo:address1 ?address1
BIND(?address1 as ?streetAddress)
}
}
FILTER NOT EXISTS {
?vcard v:hasAddress ?addressNode
}

8
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/additions/vcard9.sparql
View file

@ -1,8 +1,8 @@
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
CONSTRUCT {
?vcard v:hasURL ?webpage .

8
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/deletions/AdvisingRelationshipDel.sparql
View file

@ -1,13 +1,13 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
?advisor vivo:advisorIn ?advisingRelationship .
?advisingRelationship vivo:advisor ?advisor
?advisingRelationship vivo:advisor ?advisor
} WHERE {
?advisor vivo:advisorIn ?advisingRelationship .
OPTIONAL {
?advisingRelationship vivo:advisor ?advisor
?advisingRelationship vivo:advisor ?advisor
}
}

4
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/deletions/AdvisingRelationshipDel2.sparql
View file

@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {

6
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/deletions/EditorshipDel.sparql
View file

@ -1,12 +1,12 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
?person vivo:editorOf ?document .
?document vivo:editor ?person
} WHERE {
{
{
?person vivo:editorOf ?document
} UNION {
?document vivo:editor ?person

4
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/deletions/conceptDel.sparql
View file

@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
CONSTRUCT {

6
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/deletions/grant-pre-del.sparql
View file

@ -1,9 +1,9 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
?role vivo:roleContributesTo ?grant .
?role vivo:roleContributesTo ?grant .
?grant vivo:contributingRole ?role .
} WHERE {
?role vivo:roleContributesTo ?grant .

6
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/deletions/orcidDel.sparql
View file

@ -1,10 +1,10 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
CONSTRUCT {
?s vivo:orcidId ?orcidString .
} WHERE {
?s vivo:orcidId ?orcidString
?s vivo:orcidId ?orcidString
FILTER(isLiteral(?orcidString))
FILTER (regex(str(?orcidString), "^[0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9]-[0-9][0-9][0-9][0-9]-[0-9][0-9][0-9]([0-9]|X)$"))
}

4
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/deletions/post/awardConferredDel.sparql
View file

@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {

4
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/deletions/post/awardedDegreeDel.sparql
View file

@ -1,5 +1,5 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {

60
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/sparqlConstructs/deletions/vcardDel.sparql
View file

@ -2,7 +2,7 @@ PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {
?s foaf:firstName ?firstName .
@ -11,7 +11,7 @@ CONSTRUCT {
?s bibo:prefixName ?prefix .
?s bibo:suffixName ?suffix .
?s vivo:email ?email .
?s vivo:primaryEmail ?primaryEmail .
?s vivo:primaryEmail ?primaryEmail .
?s vivo:phoneNumber ?phoneNumber .
?s vivo:primaryPhoneNumber ?primaryPhoneNumber .
?s vivo:faxNumber ?faxNumber .
@ -35,35 +35,35 @@ CONSTRUCT {
} WHERE {
{
?s foaf:firstName ?firstName .
}
}
UNION {
?s foaf:lastName ?lastName .
}
}
UNION {
?s vivo:middleName ?middleName .
?s a foaf:Person .
}
UNION {
?s bibo:prefixName ?prefix
}
?s bibo:prefixName ?prefix
}
UNION {
?s bibo:suffixName ?suffix
}
}
UNION {
?s vivo:email ?email
}
}
UNION {
?s vivo:primaryEmail ?primaryEmail
}
?s vivo:primaryEmail ?primaryEmail
}
UNION {
?s vivo:phoneNumber ?phoneNumber
}
?s vivo:phoneNumber ?phoneNumber
}
UNION {
?s vivo:primaryPhoneNumber ?primaryPhoneNumber
}
}
UNION {
?s vivo:faxNumber ?faxNumber
}
}
UNION {
?s vivo:mailingAddress ?address .
}
@ -72,60 +72,60 @@ CONSTRUCT {
}
UNION {
?s vivo:mailingAddress ?address .
?address a ?addressType
?address a ?addressType
FILTER(regex(str(?addressType),"vivoweb.org/ontology/core"))
}
UNION {
?s vivo:mailingAddress ?address .
?address vivo:address1 ?address1 .
}
}
UNION {
?s vivo:mailingAddress ?address .
?address vivo:address2 ?address2 .
}
}
UNION {
?s vivo:mailingAddress ?address .
?address vivo:address3 ?address3 .
}
}
UNION {
?s vivo:mailingAddress ?address .
?address vivo:addressCity ?city .
}
}
UNION {
?s vivo:mailingAddress ?address .
?address vivo:addressState ?state .
}
}
UNION {
?s vivo:mailingAddress ?address .
?address vivo:addressPostalCode ?postalCode .
}
}
UNION {
?s vivo:mailingAddress ?address .
?address vivo:addressCountry ?country .
}
}
UNION {
?s vivo:mailingAddress ?address .
?address vivo:hasGeographicLocation ?location .
}
}
UNION {
?s vivo:mailingAddress ?address .
?location vivo:geographicLocationOf ?address .
}
}
UNION {
?s vivo:webpage ?webpage
?s vivo:webpage ?webpage
}
UNION {
?webpage vivo:webpageOf ?s
}
UNION {
?s vivo:webpage ?webpage
}
?s vivo:webpage ?webpage
}
UNION {
?s vivo:webpage ?webpage .
?webpage vivo:linkURI ?linkURI
}
?webpage vivo:linkURI ?linkURI
}
UNION {
?s vivo:webpage ?webpage .
?webpage vivo:linkAnchorText ?linkAnchorText
?webpage vivo:linkAnchorText ?linkAnchorText
}
}

2
webapp/src/main/webapp/WEB-INF/ontologies/update15to16/success.n3
View file

@ -7,4 +7,4 @@
<http://vitro.mannlib.cornell.edu/ns/vitro/metadata/migration/v1.6> vitro:updatedOntology <http://vivoweb.org/ontology/core> .
<http://vitro.mannlib.cornell.edu/ns/vitro/metadata/migration/v1.6> vitro:fromOntologyVersion "1.5" .
<http://vitro.mannlib.cornell.edu/ns/vitro/metadata/migration/v1.6> vitro:toOntologyVersion "1.6" .

4
webapp/src/main/webapp/WEB-INF/ontologies/update16to17/askUpdated.sparql
View file

@ -1,5 +1,5 @@
PREFIX vitro: <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vitro: <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
ASK {

20
webapp/src/main/webapp/WEB-INF/ontologies/update16to17/oldAnnotations/additionalHiding.n3
View file

@ -8,34 +8,34 @@
@prefix vitro: <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#> .
@prefix role: <http://vitro.mannlib.cornell.edu/ns/vitro/role#> .
@prefix local: <http://vitro.mannlib.cornell.edu/ns/vitro/siteConfig/> .
@prefix vivo: <http://vivoweb.org/ontology/core#> .
@prefix vivo: <http://vivoweb.org/ontology/core#> .
@base <http://vitro.mannlib.cornell.edu/ns/vitro/ApplicationConfiguration> .
# warning: don't use blank nodes; the display model doesn't currently support them.
<http://purl.obolibrary.org/obo/RO_0000053>
<http://purl.obolibrary.org/obo/RO_0000053>
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:nobody ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:nobody .
<http://purl.obolibrary.org/obo/ARG_2000028>
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:nobody ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:nobody .
vivo:relates
<http://purl.obolibrary.org/obo/ARG_2000028>
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:nobody ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:nobody .
vivo:relatedBy
vivo:relates
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:nobody ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:nobody .
vivo:assigns
vivo:relatedBy
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:nobody ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:nobody .
vivo:assignedBy
vivo:assigns
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:nobody ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:nobody .
vivo:assignedBy
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:nobody ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:nobody .

18
webapp/src/main/webapp/WEB-INF/ontologies/update16to17/oldAnnotations/initialTBoxAnnotations.n3
View file

@ -2901,7 +2901,7 @@ obo:ERO_0000044
<http://vitro.mannlib.cornell.edu/ns/vitro/role#public> ;
vitro:inPropertyGroupAnnot
<http://vivoweb.org/ontology#vitroPropertyGroupoverview> .
obo:ERO_0001261
rdfs:label "Analysis Service"@en-US ;
vitro:inClassGroup <http://vivoweb.org/ontology#vitroClassGroupactivities> .
@ -3097,7 +3097,7 @@ obo:ERO_0000045
<http://vitro.mannlib.cornell.edu/ns/vitro/role#public> ;
vitro:inPropertyGroupAnnot
<http://vivoweb.org/ontology#vitroPropertyGroupoverview> .
vivo:Division
rdfs:label "Division"@en-US ;
vitro:displayLimitAnnot
@ -5432,7 +5432,7 @@ obo:ERO_0000482 # deprecated
# "true"^^xsd:boolean ;
# vitro:inPropertyGroupAnnot
# <http://vivoweb.org/ontology#vitroPropertyGroupoverview> .
vivo:ResearchProposal
rdfs:label "Research Proposal"@en-US ;
vitro:displayLimitAnnot
@ -6134,7 +6134,7 @@ vivo:abbreviation
<http://vitro.mannlib.cornell.edu/ns/vitro/role#public> ;
vitro:inPropertyGroupAnnot
<http://vivoweb.org/ontology#vitroPropertyGroupoverview> .
vcard:postalCode
rdfs:label "postal code"@en-US .
@ -6242,7 +6242,7 @@ obo: rdfs:label "OBO Foundry"@en-US ;
<http://purl.org/spar/cito/>
vitro:ontologyPrefixAnnot "cito"^^xsd:string ;
rdfs:label "CiTO (Citation Typing Ontology)"@en-US .
vivo:providesFundingThrough
rdfs:label "provides funding through"@en-US ;
vitro:displayLimitAnnot
@ -7013,7 +7013,7 @@ vivo:Room
<http://vitro.mannlib.cornell.edu/ns/vitro/role#public> .
vivo:eRACommonsId
rdfs:label "eRA Commons ID"@en-US ;
rdfs:label "eRA Commons ID"@en-US ;
vitro:displayRankAnnot
"15"^^xsd:int ;
vitro:hiddenFromDisplayBelowRoleLevelAnnot
@ -7271,7 +7271,7 @@ obo:ERO_0000033
"true"^^xsd:boolean ;
vitro:inPropertyGroupAnnot
<http://vivoweb.org/ontology#vitroPropertyGroupoutreach> .
obo:ERO_0000397
rdfs:label "performs technique"@en-US ;
vitro:displayLimitAnnot
@ -8778,7 +8778,7 @@ obo:ERO_0000919
"true"^^xsd:boolean ;
vitro:offerCreateNewOptionAnnot
"true"^^xsd:boolean .
bibo:status
rdfs:label "status"@en-US ;
vitro:displayLimitAnnot
@ -8867,7 +8867,7 @@ geo:validUntil
vitro:hiddenFromPublishBelowRoleLevelAnnot
<http://vitro.mannlib.cornell.edu/ns/vitro/role#nobody> .
vivo:hasEquipment
rdfs:label "has equipment"@en-US ;
vitro:displayRankAnnot

2
webapp/src/main/webapp/WEB-INF/ontologies/update16to17/oldVersion/empty.owl
View file

@ -20,5 +20,5 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:swrl="http://www.w3.org/2003/11/swrl#"
xmlns:fabio="http://purl.org/spar/fabio/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" >
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" >
</rdf:RDF>

2
webapp/src/main/webapp/WEB-INF/ontologies/update16to17/success.n3
View file

@ -7,4 +7,4 @@
<http://vitro.mannlib.cornell.edu/ns/vitro/metadata/migration/v1.6> vitro:updatedOntology <http://vivoweb.org/ontology/core> .
<http://vitro.mannlib.cornell.edu/ns/vitro/metadata/migration/v1.6> vitro:fromOntologyVersion "1.6" .
<http://vitro.mannlib.cornell.edu/ns/vitro/metadata/migration/v1.6> vitro:toOntologyVersion "1.7" .

4
webapp/src/main/webapp/WEB-INF/ontologies/update17to18/askUpdated.sparql
View file

@ -1,5 +1,5 @@
PREFIX vitro: <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX vitro: <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
ASK {

20
webapp/src/main/webapp/WEB-INF/ontologies/update17to18/oldAnnotations/additionalHiding.n3
View file

@ -8,34 +8,34 @@
@prefix vitro: <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#> .
@prefix role: <http://vitro.mannlib.cornell.edu/ns/vitro/role#> .
@prefix local: <http://vitro.mannlib.cornell.edu/ns/vitro/siteConfig/> .
@prefix vivo: <http://vivoweb.org/ontology/core#> .
@prefix vivo: <http://vivoweb.org/ontology/core#> .
@base <http://vitro.mannlib.cornell.edu/ns/vitro/ApplicationConfiguration> .
# warning: don't use blank nodes; the display model doesn't currently support them.
<http://purl.obolibrary.org/obo/RO_0000053>
<http://purl.obolibrary.org/obo/RO_0000053>
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:nobody ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:nobody .
<http://purl.obolibrary.org/obo/ARG_2000028>
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:nobody ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:nobody .
vivo:relates
<http://purl.obolibrary.org/obo/ARG_2000028>
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:nobody ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:nobody .
vivo:relatedBy
vivo:relates
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:nobody ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:nobody .
vivo:assigns
vivo:relatedBy
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:nobody ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:nobody .
vivo:assignedBy
vivo:assigns
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:nobody ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:nobody .
vivo:assignedBy
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:nobody ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:nobody .

18
webapp/src/main/webapp/WEB-INF/ontologies/update17to18/oldAnnotations/initialTBoxAnnotations.n3
View file

@ -2901,7 +2901,7 @@ obo:ERO_0000044
<http://vitro.mannlib.cornell.edu/ns/vitro/role#public> ;
vitro:inPropertyGroupAnnot
<http://vivoweb.org/ontology#vitroPropertyGroupoverview> .
obo:ERO_0001261
rdfs:label "Analysis Service"@en-US ;
vitro:inClassGroup <http://vivoweb.org/ontology#vitroClassGroupactivities> .
@ -3097,7 +3097,7 @@ obo:ERO_0000045
<http://vitro.mannlib.cornell.edu/ns/vitro/role#public> ;
vitro:inPropertyGroupAnnot
<http://vivoweb.org/ontology#vitroPropertyGroupoverview> .
vivo:Division
rdfs:label "Division"@en-US ;
vitro:displayLimitAnnot
@ -5432,7 +5432,7 @@ obo:ERO_0000482 # deprecated
# "true"^^xsd:boolean ;
# vitro:inPropertyGroupAnnot
# <http://vivoweb.org/ontology#vitroPropertyGroupoverview> .
vivo:ResearchProposal
rdfs:label "Research Proposal"@en-US ;
vitro:displayLimitAnnot
@ -6134,7 +6134,7 @@ vivo:abbreviation
<http://vitro.mannlib.cornell.edu/ns/vitro/role#public> ;
vitro:inPropertyGroupAnnot
<http://vivoweb.org/ontology#vitroPropertyGroupoverview> .
vcard:postalCode
rdfs:label "postal code"@en-US .
@ -6242,7 +6242,7 @@ obo: rdfs:label "OBO Foundry"@en-US ;
<http://purl.org/spar/cito/>
vitro:ontologyPrefixAnnot "cito"^^xsd:string ;
rdfs:label "CiTO (Citation Typing Ontology)"@en-US .
vivo:providesFundingThrough
rdfs:label "provides funding through"@en-US ;
vitro:displayLimitAnnot
@ -7013,7 +7013,7 @@ vivo:Room
<http://vitro.mannlib.cornell.edu/ns/vitro/role#public> .
vivo:eRACommonsId
rdfs:label "eRA Commons ID"@en-US ;
rdfs:label "eRA Commons ID"@en-US ;
vitro:displayRankAnnot
"15"^^xsd:int ;
vitro:hiddenFromDisplayBelowRoleLevelAnnot
@ -7271,7 +7271,7 @@ obo:ERO_0000033
"true"^^xsd:boolean ;
vitro:inPropertyGroupAnnot
<http://vivoweb.org/ontology#vitroPropertyGroupoutreach> .
obo:ERO_0000397
rdfs:label "performs technique"@en-US ;
vitro:displayLimitAnnot
@ -8778,7 +8778,7 @@ obo:ERO_0000919
"true"^^xsd:boolean ;
vitro:offerCreateNewOptionAnnot
"true"^^xsd:boolean .
bibo:status
rdfs:label "status"@en-US ;
vitro:displayLimitAnnot
@ -8867,7 +8867,7 @@ geo:validUntil
vitro:hiddenFromPublishBelowRoleLevelAnnot
<http://vitro.mannlib.cornell.edu/ns/vitro/role#nobody> .
vivo:hasEquipment
rdfs:label "has equipment"@en-US ;
vitro:displayRankAnnot

2
webapp/src/main/webapp/WEB-INF/ontologies/update17to18/oldVersion/empty.owl
View file

@ -20,5 +20,5 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:swrl="http://www.w3.org/2003/11/swrl#"
xmlns:fabio="http://purl.org/spar/fabio/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" >
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" >
</rdf:RDF>

2
webapp/src/main/webapp/WEB-INF/ontologies/update17to18/success.n3
View file

@ -7,4 +7,4 @@
<http://vitro.mannlib.cornell.edu/ns/vitro/metadata/migration/v1.6> vitro:updatedOntology <http://vivoweb.org/ontology/core> .
<http://vitro.mannlib.cornell.edu/ns/vitro/metadata/migration/v1.6> vitro:fromOntologyVersion "1.6" .
<http://vitro.mannlib.cornell.edu/ns/vitro/metadata/migration/v1.6> vitro:toOntologyVersion "1.7" .

184
webapp/src/main/webapp/WEB-INF/resources/startup_listeners.txt
View file

@ -1,92 +1,92 @@
#
# ServletContextListeners for VIVO, to be instantiated and run by the StartupManager.
#
# For more information,
# https://sourceforge.net/apps/mediawiki/vivo/index.php?title=The_StartupManager
#
edu.cornell.mannlib.vitro.webapp.servlet.setup.JvmSmokeTests
edu.cornell.mannlib.vitro.webapp.application.ApplicationSetup
edu.cornell.mannlib.vitro.webapp.config.ConfigurationPropertiesSetup
edu.cornell.mannlib.vitro.webapp.config.ConfigurationPropertiesSmokeTests
edu.cornell.mannlib.vitro.webapp.utils.developer.DeveloperSettings$Setup
edu.cornell.mannlib.vitro.webapp.application.ApplicationImpl$ComponentsSetup
edu.cornell.mannlib.vitro.webapp.config.RevisionInfoSetup
edu.cornell.mannlib.vitro.webapp.email.FreemarkerEmailFactory$Setup
edu.cornell.mannlib.vitro.webapp.servlet.setup.ConfigurationModelsSetup
edu.cornell.mannlib.vitro.webapp.servlet.setup.ContentModelSetup
edu.cornell.mannlib.vitro.webapp.web.images.PlaceholderUtil$Setup
edu.cornell.mannlib.vitro.webapp.servlet.setup.FileGraphSetup
# Invokes process to perform updates to align with ontology changes if needed -->
# edu.cornell.mannlib.vitro.webapp.migration.rel16.Release16Migrator
# edu.cornell.mannlib.vitro.webapp.migration.rel17.Release17Migrator
edu.cornell.mannlib.vitro.webapp.migration.rel18.Release18Migrator
edu.cornell.mannlib.vitro.webapp.application.ApplicationImpl$ReasonersSetup
edu.cornell.mannlib.vitro.webapp.servlet.setup.SimpleReasonerSetup
# Must run after JenaDataSourceSetup
edu.cornell.mannlib.vitro.webapp.servlet.setup.ThemeInfoSetup
edu.cornell.mannlib.vitro.webapp.auth.permissions.PermissionRegistry$Setup
edu.cornell.mannlib.vitro.webapp.auth.permissions.PermissionSetsSmokeTest
edu.cornell.mannlib.vitro.webapp.auth.policy.bean.PropertyRestrictionBean$Setup
edu.cornell.mannlib.vitro.webapp.auth.policy.setup.CommonPolicyFamilySetup
edu.cornell.mannlib.vitro.webapp.auth.policy.RootUserPolicy$Setup
edu.cornell.mannlib.vivo.auth.policy.SelfEditorRelationshipPolicy$Setup
edu.cornell.mannlib.vitro.webapp.auth.policy.RestrictHomeMenuItemEditingPolicy$Setup
edu.cornell.mannlib.vitro.webapp.services.shortview.ShortViewServiceSetup
edu.cornell.mannlib.vitro.webapp.visualization.setup.VisualizationSetup
org.vivoweb.webapp.startup.DataGetterN3Setup
org.vivoweb.webapp.startup.GeneratorSetup
org.vivoweb.webapp.startup.JSONWrapperSetup
org.vivoweb.webapp.startup.MenuManagementSetup
org.vivoweb.webapp.startup.SiteAdminSetup
org.vivoweb.webapp.startup.TemplateModelSetup
org.vivoweb.webapp.startup.SearchResultTemplateModelSetup
edu.ucsf.vitro.opensocial.OpenSocialSmokeTests
# For multiple language support
edu.cornell.mannlib.vitro.webapp.i18n.selection.LocaleSelectionSetup
# The search indexer uses a "public" permission, so the PropertyRestrictionPolicyHelper
# and the PermissionRegistry must already be set up.
edu.cornell.mannlib.vitro.webapp.searchindex.SearchIndexerSetup
edu.cornell.mannlib.vitro.webapp.controller.freemarker.FreemarkerSetup
edu.cornell.mannlib.vitro.webapp.freemarker.config.FreemarkerConfiguration$Setup
# On shutdown, this will kill the background thread started by Apache Commons File Upload
org.apache.commons.fileupload.servlet.FileCleanerCleanup
# The VClassGroupCache index uses a "public" permission, so the PropertyRestrictionPolicyHelper
# and the PermissionRegistry must already be set up.
edu.cornell.mannlib.vitro.webapp.dao.jena.VClassGroupCache$Setup
edu.cornell.mannlib.vivo.orcid.OrcidContextSetup
# This should be near the end, because it will issue a warning if the connection to Solr times out.
edu.cornell.mannlib.vitro.webapp.servlet.setup.SolrSmokeTest
org.vivoweb.webapp.startup.i18nSetup
#
# ServletContextListeners for VIVO, to be instantiated and run by the StartupManager.
#
# For more information,
# https://sourceforge.net/apps/mediawiki/vivo/index.php?title=The_StartupManager
#
edu.cornell.mannlib.vitro.webapp.servlet.setup.JvmSmokeTests
edu.cornell.mannlib.vitro.webapp.application.ApplicationSetup
edu.cornell.mannlib.vitro.webapp.config.ConfigurationPropertiesSetup
edu.cornell.mannlib.vitro.webapp.config.ConfigurationPropertiesSmokeTests
edu.cornell.mannlib.vitro.webapp.utils.developer.DeveloperSettings$Setup
edu.cornell.mannlib.vitro.webapp.application.ApplicationImpl$ComponentsSetup
edu.cornell.mannlib.vitro.webapp.config.RevisionInfoSetup
edu.cornell.mannlib.vitro.webapp.email.FreemarkerEmailFactory$Setup
edu.cornell.mannlib.vitro.webapp.servlet.setup.ConfigurationModelsSetup
edu.cornell.mannlib.vitro.webapp.servlet.setup.ContentModelSetup
edu.cornell.mannlib.vitro.webapp.web.images.PlaceholderUtil$Setup
edu.cornell.mannlib.vitro.webapp.servlet.setup.FileGraphSetup
# Invokes process to perform updates to align with ontology changes if needed -->
# edu.cornell.mannlib.vitro.webapp.migration.rel16.Release16Migrator
# edu.cornell.mannlib.vitro.webapp.migration.rel17.Release17Migrator
edu.cornell.mannlib.vitro.webapp.migration.rel18.Release18Migrator
edu.cornell.mannlib.vitro.webapp.application.ApplicationImpl$ReasonersSetup
edu.cornell.mannlib.vitro.webapp.servlet.setup.SimpleReasonerSetup
# Must run after JenaDataSourceSetup
edu.cornell.mannlib.vitro.webapp.servlet.setup.ThemeInfoSetup
edu.cornell.mannlib.vitro.webapp.auth.permissions.PermissionRegistry$Setup
edu.cornell.mannlib.vitro.webapp.auth.permissions.PermissionSetsSmokeTest
edu.cornell.mannlib.vitro.webapp.auth.policy.bean.PropertyRestrictionBean$Setup
edu.cornell.mannlib.vitro.webapp.auth.policy.setup.CommonPolicyFamilySetup
edu.cornell.mannlib.vitro.webapp.auth.policy.RootUserPolicy$Setup
edu.cornell.mannlib.vivo.auth.policy.SelfEditorRelationshipPolicy$Setup
edu.cornell.mannlib.vitro.webapp.auth.policy.RestrictHomeMenuItemEditingPolicy$Setup
edu.cornell.mannlib.vitro.webapp.services.shortview.ShortViewServiceSetup
edu.cornell.mannlib.vitro.webapp.visualization.setup.VisualizationSetup
org.vivoweb.webapp.startup.DataGetterN3Setup
org.vivoweb.webapp.startup.GeneratorSetup
org.vivoweb.webapp.startup.JSONWrapperSetup
org.vivoweb.webapp.startup.MenuManagementSetup
org.vivoweb.webapp.startup.SiteAdminSetup
org.vivoweb.webapp.startup.TemplateModelSetup
org.vivoweb.webapp.startup.SearchResultTemplateModelSetup
edu.ucsf.vitro.opensocial.OpenSocialSmokeTests
# For multiple language support
edu.cornell.mannlib.vitro.webapp.i18n.selection.LocaleSelectionSetup
# The search indexer uses a "public" permission, so the PropertyRestrictionPolicyHelper
# and the PermissionRegistry must already be set up.
edu.cornell.mannlib.vitro.webapp.searchindex.SearchIndexerSetup
edu.cornell.mannlib.vitro.webapp.controller.freemarker.FreemarkerSetup
edu.cornell.mannlib.vitro.webapp.freemarker.config.FreemarkerConfiguration$Setup
# On shutdown, this will kill the background thread started by Apache Commons File Upload
org.apache.commons.fileupload.servlet.FileCleanerCleanup
# The VClassGroupCache index uses a "public" permission, so the PropertyRestrictionPolicyHelper
# and the PermissionRegistry must already be set up.
edu.cornell.mannlib.vitro.webapp.dao.jena.VClassGroupCache$Setup
edu.cornell.mannlib.vivo.orcid.OrcidContextSetup
# This should be near the end, because it will issue a warning if the connection to Solr times out.
edu.cornell.mannlib.vitro.webapp.servlet.setup.SolrSmokeTest
org.vivoweb.webapp.startup.i18nSetup

2
webapp/src/main/webapp/WEB-INF/rich-export/address/address.sparql
View file

@ -9,4 +9,4 @@ CONSTRUCT {
PERSON_URI obo:ARG_2000028 ?vcard .
?vcard vcard:hasAddress ?address .
?address ?property ?object .
}
}

2
webapp/src/main/webapp/WEB-INF/rich-export/address/locationOfAddress.sparql
View file

@ -9,4 +9,4 @@ CONSTRUCT {
?vcard vcard:hasAddress ?address .
?address obo:RO_0001025 ?geographicLocation .
?geographicLocation ?property ?object .
}
}

2
webapp/src/main/webapp/WEB-INF/rich-export/advising/advisee.sparql
View file

@ -13,4 +13,4 @@ CONSTRUCT {
?adviseeRole a core:AdviseeRole .
?adviseeRole core:relatedBy ?advisingRelationship .
?advisee ?property ?object .
}
}

2
webapp/src/main/webapp/WEB-INF/rich-export/advising/adviseesDegreeAlt.sparql
View file

@ -18,4 +18,4 @@ CONSTRUCT {
?awardedDegree core:relates ?degree .
?degree a core:AcademicDegree .
?degree ?property ?object
}
}

2
webapp/src/main/webapp/WEB-INF/rich-export/advising/adviseesEducationEndDate.sparql
View file

@ -17,4 +17,4 @@ CONSTRUCT {
?educationalTraining core:dateTimeInterval ?dateTimeInterval .
?dateTimeInterval core:end ?dateTimeValue .
?dateTimeValue ?property ?object .
}
}

2
webapp/src/main/webapp/WEB-INF/rich-export/advising/adviseesEducationalInsitituionAlt.sparql
View file

@ -18,4 +18,4 @@ CONSTRUCT {
?educationalTraining obo:RO_0000057 ?educationalInstitution .
?educationalInstitution a foaf:Organization .
?educationalInstitution rdfs:label ?label
}
}

2
webapp/src/main/webapp/WEB-INF/rich-export/advising/associatedDegree.sparql
View file

@ -8,4 +8,4 @@ CONSTRUCT {
?advisingRelationship a core:AdvisingRelationship .
?advisingRelationship core:degreeCandidacy ?degree .
?degree ?property ?object .
}
}

2
webapp/src/main/webapp/WEB-INF/rich-export/advising/associatedEducationalTraining.sparql
View file

@ -7,4 +7,4 @@ CONSTRUCT {
?advisingRelationship a core:AdvisingRelationship .
?advisingRelationship core:advisingContributionTo ?educationalTraining .
?educationalTraining ?property ?object .
}
}

2
webapp/src/main/webapp/WEB-INF/rich-export/advising/associatedEducationalTrainingAlt.sparql
View file

@ -15,4 +15,4 @@ CONSTRUCT {
?advisee core:relates ?educationalTraining .
?educationalTraining a core:EducationalProcess .
?educationalTraining ?property ?object .
}
}

4
webapp/src/main/webapp/WEB-INF/rich-export/award/award.sparql
View file

@ -5,7 +5,7 @@ CONSTRUCT {
} WHERE {
PERSON_URI core:relatedBy ?awardReceipt .
?awardReceipt a core:AwardReceipt .
?awardReceipt core:relates ?award .
?awardReceipt core:relates ?award .
?award a core:Award .
?award ?property ?object .
}
}

4
webapp/src/main/webapp/WEB-INF/rich-export/award/conferringOrganization.sparql
View file

@ -6,7 +6,7 @@ CONSTRUCT {
} WHERE {
PERSON_URI core:relatedBy ?awardReceipt .
?awardReceipt a core:AwardReceipt .
?awardReceipt core:assignedBy ?organization .
?awardReceipt core:assignedBy ?organization .
?organization a foaf:Organization .
?organization ?property ?object .
}
}

4
webapp/src/main/webapp/WEB-INF/rich-export/award/sponsoringOrganization.sparql
View file

@ -6,8 +6,8 @@ CONSTRUCT {
} WHERE {
PERSON_URI core:relatedBy ?awardReceipt .
?awardReceipt a core:AwardReceipt .
?awardReceipt core:relates ?award .
?awardReceipt core:relates ?award .
?award a core:Award .
?award core:sponsoredBy ?organization .
?organization ?property ?object .
}
}

6
webapp/src/main/webapp/WEB-INF/rich-export/credential/credential.sparql
View file

@ -3,9 +3,9 @@ PREFIX core: <http://vivoweb.org/ontology/core#>
CONSTRUCT {
?credential ?property ?object .
} WHERE {
PERSON_URI core:relatedBy ?issuedCredential .
?issuedCredential a core:IssuedCredential .
PERSON_URI core:relatedBy ?issuedCredential .
?issuedCredential a core:IssuedCredential .
?issuedCredential core:relates ?credential .
?credential a core:Credential .
?credential ?property ?object .
}
}

6
webapp/src/main/webapp/WEB-INF/rich-export/credential/credentialGoverningAuthority.sparql
View file

@ -3,10 +3,10 @@ PREFIX core: <http://vivoweb.org/ontology/core#>
CONSTRUCT {
?organization ?property ?object .
} WHERE {
PERSON_URI core:relatedBy ?issuedCredential .
?issuedCredential a core:IssuedCredential .
PERSON_URI core:relatedBy ?issuedCredential .
?issuedCredential a core:IssuedCredential .
?issuedCredential core:relates ?credential .
?credential a core:Credential .
?credential core:hasGoverningAuthority ?organization .
?organization ?property ?object .
}
}

4
webapp/src/main/webapp/WEB-INF/rich-export/credential/eligibleForCredential.sparql
View file

@ -3,6 +3,6 @@ PREFIX core: <http://vivoweb.org/ontology/core#>
CONSTRUCT {
?credential ?property ?object .
} WHERE {
PERSON_URI core:eligibleFor ?credential .
PERSON_URI core:eligibleFor ?credential .
?credential ?property ?object .
}
}

6
webapp/src/main/webapp/WEB-INF/rich-export/credential/issuedCredential.sparql
View file

@ -3,7 +3,7 @@ PREFIX core: <http://vivoweb.org/ontology/core#>
CONSTRUCT {
?issuedCredential ?property ?object .
} WHERE {
PERSON_URI core:relatedBy ?issuedCredential .
?issuedCredential a core:IssuedCredential .
PERSON_URI core:relatedBy ?issuedCredential .
?issuedCredential a core:IssuedCredential .
?issuedCredential ?property ?object .
}
}

6
webapp/src/main/webapp/WEB-INF/rich-export/credential/issuedCredentialExpirationDate.sparql
View file

@ -4,10 +4,10 @@ CONSTRUCT {
?date ?property ?object .
?precision ?property2 ?object2 .
} WHERE {
PERSON_URI core:relatedBy ?issuedCredential .
?issuedCredential a core:IssuedCredential .
PERSON_URI core:relatedBy ?issuedCredential .
?issuedCredential a core:IssuedCredential .
?issuedCredential core:expirationDate ?date .
?date ?property ?object .
?date core:dateTimePrecision ?precision .
?precision ?property2 ?object2 .
}
}

6
webapp/src/main/webapp/WEB-INF/rich-export/credential/issuedCredentialIssueDate.sparql
View file

@ -4,10 +4,10 @@ CONSTRUCT {
?date ?property ?object .
?precision ?property2 ?object2 .
} WHERE {
PERSON_URI core:relatedBy ?issuedCredential .
?issuedCredential a core:IssuedCredential .
PERSON_URI core:relatedBy ?issuedCredential .
?issuedCredential a core:IssuedCredential .
?issuedCredential core:dateIssued ?date .
?date ?property ?object .
?date core:dateTimePrecision ?precision .
?precision ?property2 ?object2 .
}
}

6
webapp/src/main/webapp/WEB-INF/rich-export/credential/issuedCredentialSubjectArea.sparql
View file

@ -3,8 +3,8 @@ PREFIX core: <http://vivoweb.org/ontology/core#>
CONSTRUCT {
?subjectArea ?property ?object .
} WHERE {
PERSON_URI core:relatedBy ?issuedCredential .
?issuedCredential a core:IssuedCredential .
PERSON_URI core:relatedBy ?issuedCredential .
?issuedCredential a core:IssuedCredential .
?issuedCredential core:hasSubjectArea ?subjectArea .
?subjectArea ?property ?object .
}
}

6
webapp/src/main/webapp/WEB-INF/rich-export/educationalTraining/educationalTraining.sparql
View file

@ -4,7 +4,7 @@ PREFIX obo: <http://purl.obolibrary.org/obo/>
CONSTRUCT {
?educationalTraining ?property ?object .
} WHERE {
PERSON_URI obo:RO_0000056 ?educationalTraining .
?educationalTraining a core:EducationalProcess .
PERSON_URI obo:RO_0000056 ?educationalTraining .
?educationalTraining a core:EducationalProcess .
?educationalTraining ?property ?object .
}
}

6
webapp/src/main/webapp/WEB-INF/rich-export/educationalTraining/educationalTrainingDegree.sparql
View file

@ -4,11 +4,11 @@ PREFIX obo: <http://purl.obolibrary.org/obo/>
CONSTRUCT {
?degree ?property ?object .
} WHERE {
PERSON_URI obo:RO_0000056 ?educationalTraining .
?educationalTraining a core:EducationalProcess .
PERSON_URI obo:RO_0000056 ?educationalTraining .
?educationalTraining a core:EducationalProcess .
?educationalTraining obo:RO_0002234 ?awardedDegree .
?awardedDegree a core:AwardedDegree .
?awardedDegree core:relates ?degree .
?degree a core:AcademicDegree .
?degree ?property ?object .
}
}

6
webapp/src/main/webapp/WEB-INF/rich-export/educationalTraining/educationalTrainingEndDate.sparql
View file

@ -5,9 +5,9 @@ CONSTRUCT {
?dateTimeInterval core:end ?date .
?date ?property ?object .
} WHERE {
PERSON_URI obo:RO_0000056 ?educationalTraining .
?educationalTraining a core:EducationalProcess .
PERSON_URI obo:RO_0000056 ?educationalTraining .
?educationalTraining a core:EducationalProcess .
?educationalTraining core:dateTimeInterval ?dateTimeInterval .
?dateTimeInterval core:end ?date .
?date ?property ?object .
}
}

6
webapp/src/main/webapp/WEB-INF/rich-export/educationalTraining/educationalTrainingLocation.sparql
View file

@ -5,11 +5,11 @@ PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
?geographicLocation ?property ?object .
} WHERE {
PERSON_URI obo:RO_0000056 ?educationalTraining .
?educationalTraining a core:EducationalProcess .
PERSON_URI obo:RO_0000056 ?educationalTraining .
?educationalTraining a core:EducationalProcess .
?educationalTraining obo:RO_0000057 ?organization .
?organization a foaf:Organization .
?organization obo:RO_0001025 ?geographicLocation .
?geographicLocation a core:GeographicLocation .
?geographicLocation ?property ?object .
}
}

6
webapp/src/main/webapp/WEB-INF/rich-export/educationalTraining/educationalTrainingOrganization.sparql
View file

@ -5,9 +5,9 @@ PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
?organization ?property ?object .
} WHERE {
PERSON_URI obo:RO_0000056 ?educationalTraining .
?educationalTraining a core:EducationalProcess .
PERSON_URI obo:RO_0000056 ?educationalTraining .
?educationalTraining a core:EducationalProcess .
?educationalTraining obo:RO_0000057 ?organization .
?organization a foaf:Organization .
?organization ?property ?object .
}
}

6
webapp/src/main/webapp/WEB-INF/rich-export/educationalTraining/educationalTrainingStartDate.sparql
View file

@ -4,9 +4,9 @@ PREFIX obo: <http://purl.obolibrary.org/obo/>
CONSTRUCT {
?date ?property ?object .
} WHERE {
PERSON_URI obo:RO_0000056 ?educationalTraining .
?educationalTraining a core:EducationalProcess .
PERSON_URI obo:RO_0000056 ?educationalTraining .
?educationalTraining a core:EducationalProcess .
?educationalTraining core:dateTimeInterval ?dateTimeInterval .
?dateTimeInterval core:start ?date .
?date ?property ?object .
}
}

10
webapp/src/main/webapp/WEB-INF/rich-export/funding/grantAwardedBy.sparql
View file

@ -3,7 +3,7 @@ PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
CONSTRUCT {
?awardingOrganization rdfs:label ?label
?awardingOrganization rdfs:label ?label
} WHERE {
{
{PERSON_URI core:relatedBy ?investigatorRole .
@ -12,12 +12,12 @@ CONSTRUCT {
union
{PERSON_URI core:relatedBy ?investigatorRole .
?investigatorRole a core:CoPrincipalInvestigatorRole
}
}
}
?investigatorRole core:relatedBy ?grant .
?grant a core:Grant .
?grant core:assignedBy ?awardingOrganization .
?awardingOrganization a foaf:Organization .
?awardingOrganization rdfs:label ?label
}
?awardingOrganization rdfs:label ?label
}

8
webapp/src/main/webapp/WEB-INF/rich-export/funding/grants.sparql
View file

@ -12,10 +12,10 @@ CONSTRUCT {
union
{ PERSON_URI core:relatedBy ?investigatorRole .
?investigatorRole a core:CoPrincipalInvestigatorRole
}
}
}
?investigatorRole core:relatedBy ?grant .
?grant a core:Grant .
?grant ?property ?object
}
?grant ?property ?object
}

2
webapp/src/main/webapp/WEB-INF/rich-export/membership/memberRoleIn.sparql
View file

@ -8,4 +8,4 @@ CONSTRUCT {
?memberRole a core:MemberRole .
?memberRole core:roleContributesTo ?endeavor .
?endeavor ?property ?object .
}
}

2
webapp/src/main/webapp/WEB-INF/rich-export/outreach/outreachRoleIn.sparql
View file

@ -8,4 +8,4 @@ CONSTRUCT {
?outreachRole a core:OutreachProviderRole .
?outreachRole core:roleContributesTo ?endeavor .
?endeavor ?property ?object .
}
}

8
webapp/src/main/webapp/WEB-INF/rich-export/patent/assignee.sparql
View file

@ -3,12 +3,12 @@ PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {
?assignee ?property ?object .
?assignee ?property ?object .
} WHERE {
PERSON_URI core:relatedBy ?authorship .
?authorship a core:Authorship .
?authorship core:relates ?patent .
?authorship core:relates ?patent .
?patent rdf:type bibo:Patent .
?patent core:assignee ?assignee .
?assignee ?property ?object .
}
?assignee ?property ?object .
}

8
webapp/src/main/webapp/WEB-INF/rich-export/patent/inventors.sparql
View file

@ -4,13 +4,13 @@ PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
?person ?property ?object .
?person ?property ?object .
} WHERE {
PERSON_URI core:relatedBy ?authorship .
?authorship a core:Authorship .
?authorship core:relates ?patent .
?authorship core:relates ?patent .
?patent rdf:type bibo:Patent .
?authorship core:relates ?person .
?person a foaf:Person .
?person ?property ?object .
}
?person ?property ?object .
}

4
webapp/src/main/webapp/WEB-INF/rich-export/patent/patent.sparql
View file

@ -5,9 +5,9 @@ PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {
?patent ?property ?object .
} WHERE {
PERSON_URI core:relatedBy ?authorship .
PERSON_URI core:relatedBy ?authorship .
?authorship a core:Authorship .
?authorship core:relates ?patent .
?patent rdf:type bibo:Patent .
?patent ?property ?object .
}
}

2
webapp/src/main/webapp/WEB-INF/rich-export/patent/patentFiledDate.sparql
View file

@ -14,4 +14,4 @@ CONSTRUCT {
?date ?property ?object .
?date core:dateTimePrecision ?precision .
?precision ?property2 ?object2 .
}
}

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