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Merge branch 'develop' of git://github.com/vivo-project/VIVO into develop

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This commit is contained in:
Jim Blake 2017-07-20 13:20:32 -04:00
commit 956e7c6050
80 changed files with 13986 additions and 507 deletions
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5
.gitignore vendored
View file

@ -1,8 +1,4 @@
/.build/
/.classpath
/.project
/.settings
/bin/
/deploy.properties
/build.properties
/runtime.properties
@ -22,3 +18,4 @@ utilities/rdbmigration/.work
**/.settings
**/.classpath
**/.project
**/bin/

37
api/src/main/java/edu/cornell/mannlib/semservices/service/impl/AgrovocService.java
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@ -6,36 +6,21 @@ import java.io.BufferedReader;
import java.io.IOException;
import java.io.InputStreamReader;
import java.io.StringWriter;
import java.net.MalformedURLException;
import java.net.URI;
import java.net.URISyntaxException;
import java.net.URL;
import java.rmi.RemoteException;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Iterator;
import java.util.LinkedHashSet;
import java.util.List;
import java.util.concurrent.TimeUnit;
import javax.xml.parsers.ParserConfigurationException;
import javax.xml.rpc.ServiceException;
import net.sf.json.JSONArray;
import net.sf.json.JSONObject;
import net.sf.json.JSONSerializer;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.w3c.dom.Attr;
import org.w3c.dom.Document;
import org.w3c.dom.NamedNodeMap;
import org.w3c.dom.Node;
import org.w3c.dom.NodeList;
import org.xml.sax.SAXException;
import org.apache.jena.query.Query;
import org.apache.jena.query.QueryExecution;
import org.apache.jena.query.QueryExecutionFactory;
@ -45,11 +30,21 @@ import org.apache.jena.query.ResultSet;
import org.apache.jena.rdf.model.Literal;
import org.apache.jena.rdf.model.RDFNode;
import org.apache.jena.rdf.model.Resource;
import org.w3c.dom.Attr;
import org.w3c.dom.Document;
import org.w3c.dom.NamedNodeMap;
import org.w3c.dom.Node;
import org.w3c.dom.NodeList;
import org.xml.sax.SAXException;
import com.fasterxml.jackson.databind.node.ArrayNode;
import com.fasterxml.jackson.databind.node.ObjectNode;
import edu.cornell.mannlib.semservices.bo.Concept;
import edu.cornell.mannlib.semservices.service.ExternalConceptService;
import edu.cornell.mannlib.semservices.util.SKOSUtils;
import edu.cornell.mannlib.semservices.util.XMLUtils;
import edu.cornell.mannlib.vitro.webapp.utils.json.JacksonUtils;
import edu.cornell.mannlib.vitro.webapp.web.URLEncoder;
public class AgrovocService implements ExternalConceptService {
@ -398,16 +393,16 @@ public class AgrovocService implements ExternalConceptService {
//JSON-LD array
private List<String> getConceptURIsListFromSkosMosResult(String results) {
List<String> conceptURIs = new ArrayList<String>();
JSONObject json = (JSONObject) JSONSerializer.toJSON(results);
ObjectNode json = (ObjectNode) JacksonUtils.parseJson(results);
//Format should be: { ..."results":["uri":uri...]
if (json.containsKey("results")) {
JSONArray jsonArray = json.getJSONArray("results");
if (json.has("results")) {
ArrayNode jsonArray = (ArrayNode) json.get("results");
int numberResults = jsonArray.size();
int i;
for(i = 0; i < numberResults; i++) {
JSONObject jsonObject = jsonArray.getJSONObject(i);
if(jsonObject.containsKey("uri")) {
conceptURIs.add(jsonObject.getString("uri"));
ObjectNode jsonObject = (ObjectNode) jsonArray.get(i);
if(jsonObject.has("uri")) {
conceptURIs.add(jsonObject.get("uri").asText());
}
}
}

30
api/src/main/java/edu/cornell/mannlib/semservices/service/impl/GemetService.java
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@ -11,16 +11,16 @@ import java.net.URLEncoder;
import java.util.ArrayList;
import java.util.List;
import net.sf.json.JSONArray;
import net.sf.json.JSONObject;
import net.sf.json.JSONSerializer;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import com.fasterxml.jackson.databind.node.ArrayNode;
import com.fasterxml.jackson.databind.node.ObjectNode;
import edu.cornell.mannlib.semservices.bo.Concept;
import edu.cornell.mannlib.semservices.exceptions.ConceptsNotFoundException;
import edu.cornell.mannlib.semservices.service.ExternalConceptService;
import edu.cornell.mannlib.vitro.webapp.utils.json.JacksonUtils;
public class GemetService implements ExternalConceptService {
protected final Log logger = LogFactory.getLog(getClass());
@ -82,7 +82,7 @@ public class GemetService implements ExternalConceptService {
List<Concept> conceptList = new ArrayList<Concept>();
try {
JSONArray jsonArray = (JSONArray) JSONSerializer.toJSON( results );
ArrayNode jsonArray = (ArrayNode) JacksonUtils.parseJson(results);
if (jsonArray.size() == 0) {
throw new ConceptsNotFoundException();
}
@ -91,7 +91,7 @@ public class GemetService implements ExternalConceptService {
Concept concept = new Concept();
concept.setDefinedBy(schemeURI);
concept.setBestMatch("true");
JSONObject json = jsonArray.getJSONObject(i);
ObjectNode json = (ObjectNode) jsonArray.get(i);
String uri = getJsonValue(json, "uri");
concept.setUri(uri);
@ -99,15 +99,14 @@ public class GemetService implements ExternalConceptService {
concept.setSchemeURI(schemeURI);
concept.setType("");
if (json.has("preferredLabel")) {
JSONObject preferredLabelObj = json
.getJSONObject("preferredLabel");
ObjectNode preferredLabelObj = (ObjectNode) json.get("preferredLabel");
if (preferredLabelObj.has("string")) {
concept.setLabel(getJsonValue(preferredLabelObj,
"string"));
}
}
if (json.has("definition")) {
JSONObject definitionObj = json.getJSONObject("definition");
ObjectNode definitionObj = (ObjectNode) json.get("definition");
if (definitionObj.has("string")) {
concept.setDefinition(getJsonValue(definitionObj,
"string"));
@ -147,9 +146,9 @@ public class GemetService implements ExternalConceptService {
* @param obj JSON Object
* @param key Key to retrieve
*/
protected String getJsonValue(JSONObject obj, String key) {
protected String getJsonValue(ObjectNode obj, String key) {
if (obj.has(key)) {
return obj.getString(key);
return obj.get(key).asText();
} else {
return new String("");
}
@ -312,12 +311,12 @@ public class GemetService implements ExternalConceptService {
protected List<String> getRelatedUris(String json) {
List<String> uriList = new ArrayList<String>();
String uri = new String();
JSONArray jsonArray = (JSONArray) JSONSerializer.toJSON( json );
ArrayNode jsonArray = (ArrayNode) JacksonUtils.parseJson(json);
if (jsonArray.size() == 0) {
return new ArrayList<String>();
}
for (int i = 0; i < jsonArray.size(); i++) {
JSONObject jsonObj = jsonArray.getJSONObject(i);
ObjectNode jsonObj = (ObjectNode) jsonArray.get(i);
uri = getJsonValue(jsonObj, "uri");
uriList.add(uri);
}
@ -328,13 +327,12 @@ public class GemetService implements ExternalConceptService {
protected List<String> getPropertyFromJson(String json) {
List<String> props = new ArrayList<String>();
JSONArray jsonArray = (JSONArray) JSONSerializer.toJSON(json);
ArrayNode jsonArray = (ArrayNode) JacksonUtils.parseJson(json);
if (jsonArray.size() == 0) {
return new ArrayList<String>();
}
for (int i = 0; i < jsonArray.size(); i++) {
JSONObject jsonObj = jsonArray.getJSONObject(i);
System.out.println(jsonObj.toString());
System.out.println((jsonArray.get(i)).toString());
}
return props;
}

10
api/src/main/java/edu/cornell/mannlib/semservices/service/impl/LCSHService.java
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@ -6,8 +6,6 @@ import java.io.BufferedReader;
import java.io.IOException;
import java.io.InputStreamReader;
import java.io.StringWriter;
import java.net.URI;
import java.net.URISyntaxException;
import java.net.URL;
import java.net.URLEncoder;
import java.util.ArrayList;
@ -15,9 +13,6 @@ import java.util.List;
import javax.xml.parsers.ParserConfigurationException;
import net.sf.json.JSONObject;
import net.sf.json.JSONSerializer;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
@ -28,10 +23,13 @@ import org.w3c.dom.Node;
import org.w3c.dom.NodeList;
import org.xml.sax.SAXException;
import com.fasterxml.jackson.databind.node.ObjectNode;
import edu.cornell.mannlib.semservices.bo.Concept;
import edu.cornell.mannlib.semservices.service.ExternalConceptService;
import edu.cornell.mannlib.semservices.util.SKOSUtils;
import edu.cornell.mannlib.semservices.util.XMLUtils;
import edu.cornell.mannlib.vitro.webapp.utils.json.JacksonUtils;
public class LCSHService implements ExternalConceptService {
@ -164,7 +162,7 @@ public class LCSHService implements ExternalConceptService {
public List<String> getConceptURISFromJSON(String results) {
List<String> uris = new ArrayList<String>();
try {
JSONObject json = (JSONObject) JSONSerializer.toJSON(results);
ObjectNode json = (ObjectNode) JacksonUtils.parseJson(results);
log.debug(json.toString());
// Get atom entry elements

22
api/src/main/java/edu/cornell/mannlib/semservices/service/impl/UMLSService.java
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@ -10,16 +10,16 @@ import java.net.URLEncoder;
import java.util.ArrayList;
import java.util.List;
import net.sf.json.JSONArray;
import net.sf.json.JSONObject;
import net.sf.json.JSONSerializer;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import com.fasterxml.jackson.databind.node.ArrayNode;
import com.fasterxml.jackson.databind.node.ObjectNode;
import edu.cornell.mannlib.semservices.bo.Concept;
import edu.cornell.mannlib.semservices.exceptions.ConceptsNotFoundException;
import edu.cornell.mannlib.semservices.service.ExternalConceptService;
import edu.cornell.mannlib.vitro.webapp.utils.json.JacksonUtils;
/**
* @author jaf30
@ -118,20 +118,20 @@ public class UMLSService implements ExternalConceptService {
boolean allFound = false;
try {
JSONObject json = (JSONObject) JSONSerializer.toJSON( results );
ObjectNode json = (ObjectNode) JacksonUtils.parseJson(results);
//System.out.println(json.toString());
if (json.has("Best Match")) {
bestMatchFound = true;
//System.out.println("Best Match");
JSONArray bestMatchArray = json.getJSONArray("Best Match");
ArrayNode bestMatchArray = (ArrayNode) json.get("Best Match");
int len = bestMatchArray.size();
if (len > 1) {
logger.debug("Found this many best matches: "+ len);
}
int i;
for (i = 0; i < len; i++) {
JSONObject o = bestMatchArray.getJSONObject(i);
ObjectNode o = (ObjectNode) bestMatchArray.get(i);
//System.out.println(o.toString());
Concept concept = new Concept();
concept.setDefinedBy(schemeURI);
@ -150,12 +150,12 @@ public class UMLSService implements ExternalConceptService {
}
if (json.has("All")) {
allFound = true;
JSONArray allArray = json.getJSONArray("All");
ArrayNode allArray = (ArrayNode) json.get("All");
int len = allArray.size();
//System.out.println("size of best match array: "+ len);
int i;
for (i = 0; i < len; i++) {
JSONObject o = allArray.getJSONObject(i);
ObjectNode o = (ObjectNode) allArray.get(i);
//System.out.println(o.toString());
Concept concept = new Concept();
concept.setDefinedBy(schemeURI);
@ -194,9 +194,9 @@ public class UMLSService implements ExternalConceptService {
* @param obj JSON Object
* @param key Key to retrieve
*/
protected String getJsonValue(JSONObject obj, String key) {
protected String getJsonValue(ObjectNode obj, String key) {
if (obj.has(key)) {
return obj.getString(key);
return obj.get(key).asText();
} else {
return new String("");
}

17
api/src/main/java/edu/cornell/mannlib/vitro/webapp/edit/n3editing/configuration/preprocessors/AddAssociatedConceptsPreprocessor.java
View file

@ -8,14 +8,9 @@ import java.util.HashSet;
import java.util.List;
import java.util.Map;
import net.sf.json.JSON;
import net.sf.json.JSONArray;
import net.sf.json.JSONSerializer;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.apache.jena.ontology.OntModel;
import org.apache.jena.query.Query;
import org.apache.jena.query.QueryExecution;
@ -30,6 +25,9 @@ import org.apache.jena.vocabulary.RDF;
import org.apache.jena.vocabulary.RDFS;
import org.apache.jena.vocabulary.XSD;
import com.fasterxml.jackson.databind.JsonNode;
import com.fasterxml.jackson.databind.node.ArrayNode;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.dao.WebappDaoFactory;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.BaseEditSubmissionPreprocessorVTwo;
@ -38,6 +36,7 @@ import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.EditConfigurationVTw
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.MultiValueEditSubmission;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.fields.FieldVTwo;
import edu.cornell.mannlib.vitro.webapp.modelaccess.ModelAccess;
import edu.cornell.mannlib.vitro.webapp.utils.json.JacksonUtils;
public class AddAssociatedConceptsPreprocessor extends
BaseEditSubmissionPreprocessorVTwo {
@ -174,10 +173,10 @@ public class AddAssociatedConceptsPreprocessor extends
if(uris.size() > 0) {
String jsonString = uris.get(0);
if(jsonString != null && !jsonString.isEmpty()) {
JSON json = JSONSerializer.toJSON(jsonString);
JsonNode json = JacksonUtils.parseJson(jsonString);
//This should be an array
if(json.isArray()) {
JSONArray jsonArray = (JSONArray) JSONSerializer.toJSON(jsonString);
ArrayNode jsonArray = (ArrayNode) JacksonUtils.parseJson(jsonString);
//Convert to list of strings
return convertJsonArrayToList(jsonArray);
}
@ -186,12 +185,12 @@ public class AddAssociatedConceptsPreprocessor extends
return uris;
}
private List<String> convertJsonArrayToList(JSONArray jsonArray) {
private List<String> convertJsonArrayToList(ArrayNode jsonArray) {
List<String> stringList = new ArrayList<String>();
int len = jsonArray.size();
int i = 0;
for(i = 0; i < len; i++) {
stringList.add(jsonArray.getString(i));
stringList.add(jsonArray.get(i).asText());
}
return stringList;
}

36
api/src/main/java/edu/cornell/mannlib/vitro/webapp/edit/n3editing/configuration/preprocessors/utils/ProcessInternalClassDataGetterN3.java
View file

@ -2,16 +2,14 @@
package edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.utils;
import java.util.Collection;
import java.util.List;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.HashMap;
import java.util.Map;
import java.util.List;
import javax.servlet.ServletContext;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.apache.jena.ontology.OntModel;
import org.apache.jena.query.Query;
import org.apache.jena.query.QueryExecution;
@ -23,13 +21,13 @@ import org.apache.jena.rdf.model.Literal;
import org.apache.jena.rdf.model.Resource;
import org.apache.jena.rdf.model.ResourceFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.fasterxml.jackson.databind.node.ArrayNode;
import com.fasterxml.jackson.databind.node.ObjectNode;
import edu.cornell.mannlib.vitro.webapp.dao.DisplayVocabulary;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.fields.FieldVTwo;
import javax.servlet.ServletContext;
import net.sf.json.JSONArray;
import net.sf.json.JSONObject;
import net.sf.json.JSONSerializer;
//Returns the appropriate n3 for selection of classes from within class group
public class ProcessInternalClassDataGetterN3 extends ProcessIndividualsForClassesDataGetterN3 {
private static String classType = "java:edu.cornell.mannlib.vitro.webapp.utils.dataGetter.InternalClassesDataGetter";
@ -167,11 +165,11 @@ public class ProcessInternalClassDataGetterN3 extends ProcessIndividualsForClas
}
public JSONObject getExistingValuesJSON(String dataGetterURI, OntModel queryModel, ServletContext context) {
JSONObject jObject = new JSONObject();
jObject.element("dataGetterClass", classType);
public ObjectNode getExistingValuesJSON(String dataGetterURI, OntModel queryModel, ServletContext context) {
ObjectNode jObject = new ObjectMapper().createObjectNode();
jObject.put("dataGetterClass", classType);
//Update to include class type as variable
jObject.element(classTypeVarBase, classType);
jObject.put(classTypeVarBase, classType);
//Get selected class group, if internal class, and classes selected from class group
getExistingClassGroupAndInternalClass(dataGetterURI, jObject, queryModel);
//Get all classes in the class group
@ -179,7 +177,7 @@ public class ProcessInternalClassDataGetterN3 extends ProcessIndividualsForClas
return jObject;
}
private void getExistingClassGroupAndInternalClass(String dataGetterURI, JSONObject jObject, OntModel queryModel) {
private void getExistingClassGroupAndInternalClass(String dataGetterURI, ObjectNode jObject, OntModel queryModel) {
String querystr = getExistingValuesInternalClass(dataGetterURI);
QueryExecution qe = null;
Literal internalClassLiteral = null;
@ -187,7 +185,7 @@ public class ProcessInternalClassDataGetterN3 extends ProcessIndividualsForClas
Query query = QueryFactory.create(querystr);
qe = QueryExecutionFactory.create(query, queryModel);
ResultSet results = qe.execSelect();
JSONArray individualsForClasses = new JSONArray();
ArrayNode individualsForClasses = new ObjectMapper().createArrayNode();
String classGroupURI = null;
while( results.hasNext()){
QuerySolution qs = results.nextSolution();
@ -208,14 +206,14 @@ public class ProcessInternalClassDataGetterN3 extends ProcessIndividualsForClas
}
jObject.element("classGroup", classGroupURI);
jObject.put("classGroup", classGroupURI);
//this is a json array
jObject.element(individualClassVarNameBase, individualsForClasses);
jObject.set(individualClassVarNameBase, individualsForClasses);
//Internal class - if null then add false otherwise use the value
if(internalClassLiteral != null) {
jObject.element(internalClassVarNameBase, internalClassLiteral.getString());
jObject.put(internalClassVarNameBase, internalClassLiteral.getString());
} else {
jObject.element(internalClassVarNameBase, "false");
jObject.put(internalClassVarNameBase, "false");
}
} catch(Exception ex) {
log.error("Exception occurred in retrieving existing values with query " + querystr, ex);

389
api/src/main/java/edu/cornell/mannlib/vitro/webapp/visualization/coauthorship/CoAuthorshipGraphMLWriter.java
View file

@ -2,6 +2,8 @@
package edu.cornell.mannlib.vitro.webapp.visualization.coauthorship;
import java.io.OutputStreamWriter;
import java.io.StringWriter;
import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
@ -16,45 +18,77 @@ import edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.Collabo
import edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaboratorComparator;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaboration;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory;
import javax.xml.parsers.ParserConfigurationException;
import javax.xml.transform.OutputKeys;
import javax.xml.transform.Transformer;
import javax.xml.transform.TransformerConfigurationException;
import javax.xml.transform.TransformerException;
import javax.xml.transform.TransformerFactory;
import javax.xml.transform.dom.DOMSource;
import javax.xml.transform.stream.StreamResult;
public class CoAuthorshipGraphMLWriter {
private StringBuilder coAuthorshipGraphMLContent;
private final String GRAPHML_HEADER = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"
+ " <graphml xmlns=\"http://graphml.graphdrawing.org/xmlns\"\n"
+ " xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"\n"
+ " xsi:schemaLocation=\"http://graphml.graphdrawing.org/xmlns\n"
+ " http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd\">\n\n";
private final String GRAPHML_FOOTER = "</graphml>";
private final String GRAPHML_NS = "http://graphml.graphdrawing.org/xmlns";
public CoAuthorshipGraphMLWriter(CollaborationData visVOContainer) {
coAuthorshipGraphMLContent = createCoAuthorshipGraphMLContent(visVOContainer);
}
private StringBuilder createCoAuthorshipGraphMLContent(
CollaborationData coAuthorshipData) {
private StringBuilder createCoAuthorshipGraphMLContent(CollaborationData coAuthorshipData) {
StringBuilder graphMLContent = new StringBuilder();
graphMLContent.append(GRAPHML_HEADER);
/*
* We are side-effecting "graphMLContent" object in this method since creating
* another String object to hold key definition data will be redundant & will
* not serve the purpose.
* */
generateKeyDefinitionContent(coAuthorshipData, graphMLContent);
/*
* Used to generate graph content. It will contain both the nodes & edge information.
* We are side-effecting "graphMLContent".
* */
generateGraphContent(coAuthorshipData, graphMLContent);
graphMLContent.append(GRAPHML_FOOTER);
try {
DocumentBuilderFactory docFactory = DocumentBuilderFactory.newInstance();
docFactory.setNamespaceAware(true);
DocumentBuilder docBuilder = docFactory.newDocumentBuilder();
// root elements
Document doc = docBuilder.newDocument();
doc.setXmlVersion("1.0");
Element rootElement = doc.createElementNS(GRAPHML_NS, "graphml");
doc.appendChild(rootElement);
/*
* We are side-effecting "graphMLContent" object in this method since creating
* another String object to hold key definition data will be redundant & will
* not serve the purpose.
* */
generateKeyDefinitionContent(coAuthorshipData, rootElement);
/*
* Used to generate graph content. It will contain both the nodes & edge information.
* We are side-effecting "graphMLContent".
* */
generateGraphContent(coAuthorshipData, rootElement);
DOMSource source = new DOMSource(doc);
TransformerFactory transFactory = TransformerFactory.newInstance();
Transformer transformer = transFactory.newTransformer();
transformer.setOutputProperty(OutputKeys.ENCODING, "UTF-8");
transformer.setOutputProperty(OutputKeys.INDENT, "yes");
StringWriter writer = new StringWriter();
StreamResult result = new StreamResult(writer);
transformer.transform(source, result);
graphMLContent.append(writer.toString());
} catch (TransformerConfigurationException e) {
throw new IllegalStateException("XML error generating GraphML", e);
} catch (TransformerException e) {
throw new IllegalStateException("XML error generating GraphML", e);
} catch (ParserConfigurationException e) {
throw new IllegalStateException("XML error generating GraphML", e);
}
return graphMLContent;
}
@ -62,119 +96,110 @@ public class CoAuthorshipGraphMLWriter {
return coAuthorshipGraphMLContent;
}
private void generateGraphContent(CollaborationData coAuthorshipData,
StringBuilder graphMLContent) {
private void generateGraphContent(CollaborationData coAuthorshipData, Element rootElement) {
Document doc = rootElement.getOwnerDocument();
graphMLContent.append("\n<graph edgedefault=\"undirected\">\n");
if (coAuthorshipData.getCollaborators() != null
&& coAuthorshipData.getCollaborators().size() > 0) {
generateNodeSectionContent(coAuthorshipData, graphMLContent);
Element graph = doc.createElementNS(GRAPHML_NS, "graph");
graph.setAttribute("edgedefault", "undirected");
rootElement.appendChild(graph);
if (coAuthorshipData.getCollaborators() != null && coAuthorshipData.getCollaborators().size() > 0) {
generateNodeSectionContent(coAuthorshipData, graph);
}
if (coAuthorshipData.getCollaborations() != null
&& coAuthorshipData.getCollaborations().size() > 0) {
generateEdgeSectionContent(coAuthorshipData, graphMLContent);
if (coAuthorshipData.getCollaborations() != null && coAuthorshipData.getCollaborations().size() > 0) {
generateEdgeSectionContent(coAuthorshipData, graph);
}
graphMLContent.append("</graph>\n");
}
private void generateEdgeSectionContent(CollaborationData coAuthorshipData,
StringBuilder graphMLContent) {
graphMLContent.append("<!-- edges -->\n");
Set<Collaboration> edges = coAuthorshipData.getCollaborations();
private void generateEdgeSectionContent(CollaborationData coAuthorshipData, Element graphElement) {
Document doc = graphElement.getOwnerDocument();
graphElement.appendChild(doc.createComment("edges"));
Set<Collaboration> edges = coAuthorshipData.getCollaborations();
List<Collaboration> orderedEdges = new ArrayList<Collaboration>(edges);
Collections.sort(orderedEdges, new CollaborationComparator());
for (Collaboration currentEdge : orderedEdges) {
/*
* This method actually creates the XML code for a single Collaboration.
* "graphMLContent" is being side-effected.
* */
getEdgeContent(graphMLContent, currentEdge);
getEdgeContent(graphElement, currentEdge);
}
}
private void getEdgeContent(StringBuilder graphMLContent, Collaboration currentEdge) {
graphMLContent.append("<edge "
+ "id=\"" + currentEdge.getCollaborationID() + "\" "
+ "source=\"" + currentEdge.getSourceCollaborator()
.getCollaboratorID() + "\" "
+ "target=\"" + currentEdge.getTargetCollaborator()
.getCollaboratorID() + "\" "
+ ">\n");
graphMLContent.append("\t<data key=\"collaborator1\">"
+ currentEdge.getSourceCollaborator().getCollaboratorName()
+ "</data>\n");
graphMLContent.append("\t<data key=\"collaborator2\">"
+ currentEdge.getTargetCollaborator().getCollaboratorName()
+ "</data>\n");
graphMLContent.append("\t<data key=\"number_of_coauthored_works\">"
+ currentEdge.getNumOfCollaborations()
+ "</data>\n");
private void getEdgeContent(Element graphElement, Collaboration currentEdge) {
Document doc = graphElement.getOwnerDocument();
Element edge = doc.createElementNS(GRAPHML_NS, "edge");
edge.setAttribute("id", String.valueOf(currentEdge.getCollaborationID()));
edge.setAttribute("source", String.valueOf(currentEdge.getSourceCollaborator().getCollaboratorID()));
edge.setAttribute("target", String.valueOf(currentEdge.getTargetCollaborator().getCollaboratorID()));
graphElement.appendChild(edge);
Element collaborator1 = doc.createElementNS(GRAPHML_NS, "data");
collaborator1.setAttribute("key", "collaborator1");
collaborator1.setTextContent(currentEdge.getSourceCollaborator().getCollaboratorName());
edge.appendChild(collaborator1);
Element collaborator2 = doc.createElementNS(GRAPHML_NS, "data");
collaborator2.setAttribute("key", "collaborator2");
collaborator2.setTextContent(currentEdge.getTargetCollaborator().getCollaboratorName());
edge.appendChild(collaborator2);
Element works = doc.createElementNS(GRAPHML_NS, "data");
works.setAttribute("key", "number_of_coauthored_works");
works.setTextContent(String.valueOf(currentEdge.getNumOfCollaborations()));
edge.appendChild(works);
if (currentEdge.getEarliestCollaborationYearCount() != null) {
/*
* There is no clean way of getting the map contents in java even though
* we are sure to have only one entry on the map. So using the for loop.
* */
for (Map.Entry<String, Integer> publicationInfo
: currentEdge.getEarliestCollaborationYearCount().entrySet()) {
graphMLContent.append("\t<data key=\"earliest_collaboration\">"
+ publicationInfo.getKey()
+ "</data>\n");
for (Map.Entry<String, Integer> publicationInfo : currentEdge.getEarliestCollaborationYearCount().entrySet()) {
graphMLContent.append("\t<data key=\"num_earliest_collaboration\">"
+ publicationInfo.getValue()
+ "</data>\n");
Element earliest = doc.createElementNS(GRAPHML_NS, "data");
earliest.setAttribute("key", "earliest_collaboration");
earliest.setTextContent(publicationInfo.getKey());
edge.appendChild(earliest);
Element earliestCount = doc.createElementNS(GRAPHML_NS, "data");
earliestCount.setAttribute("key", "num_earliest_collaboration");
earliestCount.setTextContent(publicationInfo.getValue().toString());
edge.appendChild(earliestCount);
}
}
if (currentEdge.getLatestCollaborationYearCount() != null) {
for (Map.Entry<String, Integer> publicationInfo
: currentEdge.getLatestCollaborationYearCount().entrySet()) {
graphMLContent.append("\t<data key=\"latest_collaboration\">"
+ publicationInfo.getKey()
+ "</data>\n");
for (Map.Entry<String, Integer> publicationInfo : currentEdge.getLatestCollaborationYearCount().entrySet()) {
Element latest = doc.createElementNS(GRAPHML_NS, "data");
latest.setAttribute("key", "latest_collaboration");
latest.setTextContent(publicationInfo.getKey());
edge.appendChild(latest);
graphMLContent.append("\t<data key=\"num_latest_collaboration\">"
+ publicationInfo.getValue()
+ "</data>\n");
Element latestCount = doc.createElementNS(GRAPHML_NS, "data");
latestCount.setAttribute("key", "num_latest_collaboration");
latestCount.setTextContent(publicationInfo.getValue().toString());
edge.appendChild(latestCount);
}
}
if (currentEdge.getUnknownCollaborationYearCount() != null) {
graphMLContent.append("\t<data key=\"num_unknown_collaboration\">"
+ currentEdge.getUnknownCollaborationYearCount()
+ "</data>\n");
Element unknown = doc.createElementNS(GRAPHML_NS, "data");
unknown.setAttribute("key", "num_unknown_collaboration");
unknown.setTextContent(String.valueOf(currentEdge.getUnknownCollaborationYearCount()));
edge.appendChild(unknown);
}
graphMLContent.append("</edge>\n");
}
private void generateNodeSectionContent(CollaborationData coAuthorshipData,
StringBuilder graphMLContent) {
graphMLContent.append("<!-- nodes -->\n");
private void generateNodeSectionContent(CollaborationData coAuthorshipData, Element graphElement) {
Document doc = graphElement.getOwnerDocument();
graphElement.appendChild(doc.createComment("nodes"));
Collaborator egoNode = coAuthorshipData.getEgoCollaborator();
Set<Collaborator> authorNodes = coAuthorshipData.getCollaborators();
@ -184,142 +209,130 @@ public class CoAuthorshipGraphMLWriter {
* of the co-author vis. Ego should always come first.
*
* */
getNodeContent(graphMLContent, egoNode);
getNodeContent(graphElement, egoNode);
List<Collaborator> orderedAuthorNodes = new ArrayList<Collaborator>(authorNodes);
orderedAuthorNodes.remove(egoNode);
Collections.sort(orderedAuthorNodes, new CollaboratorComparator());
for (Collaborator currNode : orderedAuthorNodes) {
/*
* We have already printed the Ego Collaborator info.
* */
if (currNode != egoNode) {
getNodeContent(graphMLContent, currNode);
getNodeContent(graphElement, currNode);
}
}
}
private void getNodeContent(StringBuilder graphMLContent, Collaborator node) {
private void getNodeContent(Element graphElement, Collaborator collaborator) {
Document doc = graphElement.getOwnerDocument();
ParamMap individualProfileURLParams =
new ParamMap(VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY,
node.getCollaboratorURI());
new ParamMap(VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY, collaborator.getCollaboratorURI());
String profileURL = UrlBuilder.getUrl(VisualizationFrameworkConstants.INDIVIDUAL_URL_PREFIX, individualProfileURLParams);
Element node = doc.createElementNS(GRAPHML_NS, "node");
node.setAttribute("id", String.valueOf(collaborator.getCollaboratorID()));
graphElement.appendChild(node);
Element url = doc.createElementNS(GRAPHML_NS, "data");
url.setAttribute("key", "url");
url.setTextContent(collaborator.getCollaboratorURI());
node.appendChild(url);
Element label = doc.createElementNS(GRAPHML_NS, "data");
label.setAttribute("key", "label");
label.setTextContent(collaborator.getCollaboratorName());
node.appendChild(label);
String profileURL = UrlBuilder.getUrl(VisualizationFrameworkConstants.INDIVIDUAL_URL_PREFIX,
individualProfileURLParams);
graphMLContent.append("<node id=\"" + node.getCollaboratorID() + "\">\n");
graphMLContent.append("\t<data key=\"url\">" + node.getCollaboratorURI() + "</data>\n");
graphMLContent.append("\t<data key=\"label\">" + node.getCollaboratorName() + "</data>\n");
if (profileURL != null) {
graphMLContent.append("\t<data key=\"profile_url\">" + profileURL + "</data>\n");
Element profile = doc.createElementNS(GRAPHML_NS, "data");
profile.setAttribute("key", "profile_url");
profile.setTextContent(profileURL);
node.appendChild(profile);
}
graphMLContent.append("\t<data key=\"number_of_authored_works\">"
+ node.getNumOfActivities()
+ "</data>\n");
if (node.getEarliestActivityYearCount() != null) {
Element works = doc.createElementNS(GRAPHML_NS, "data");
works.setAttribute("key", "number_of_authored_works");
works.setTextContent(String.valueOf(collaborator.getNumOfActivities()));
node.appendChild(works);
if (collaborator.getEarliestActivityYearCount() != null) {
/*
* There is no clean way of getting the map contents in java even though
* we are sure to have only one entry on the map. So using the for loop.
* I am feeling dirty just about now.
* */
for (Map.Entry<String, Integer> publicationInfo
: node.getEarliestActivityYearCount().entrySet()) {
graphMLContent.append("\t<data key=\"earliest_publication\">"
+ publicationInfo.getKey()
+ "</data>\n");
for (Map.Entry<String, Integer> publicationInfo : collaborator.getEarliestActivityYearCount().entrySet()) {
Element earliest = doc.createElementNS(GRAPHML_NS, "data");
earliest.setAttribute("key", "earliest_publication");
earliest.setTextContent(publicationInfo.getKey());
node.appendChild(earliest);
graphMLContent.append("\t<data key=\"num_earliest_publication\">"
+ publicationInfo.getValue()
+ "</data>\n");
Element earliestCount = doc.createElementNS(GRAPHML_NS, "data");
earliestCount.setAttribute("key", "num_earliest_publication");
earliestCount.setTextContent(publicationInfo.getValue().toString());
node.appendChild(earliestCount);
}
}
if (node.getLatestActivityYearCount() != null) {
for (Map.Entry<String, Integer> publicationInfo
: node.getLatestActivityYearCount().entrySet()) {
graphMLContent.append("\t<data key=\"latest_publication\">"
+ publicationInfo.getKey()
+ "</data>\n");
if (collaborator.getLatestActivityYearCount() != null) {
for (Map.Entry<String, Integer> publicationInfo : collaborator.getLatestActivityYearCount().entrySet()) {
Element latest = doc.createElementNS(GRAPHML_NS, "data");
latest.setAttribute("key", "latest_publication");
latest.setTextContent(publicationInfo.getKey());
node.appendChild(latest);
graphMLContent.append("\t<data key=\"num_latest_publication\">"
+ publicationInfo.getValue()
+ "</data>\n");
Element latestCount = doc.createElementNS(GRAPHML_NS, "data");
latestCount.setAttribute("key", "num_latest_publication");
latestCount.setTextContent(publicationInfo.getValue().toString());
node.appendChild(latestCount);
}
}
if (node.getUnknownActivityYearCount() != null) {
graphMLContent.append("\t<data key=\"num_unknown_publication\">"
+ node.getUnknownActivityYearCount()
+ "</data>\n");
if (collaborator.getUnknownActivityYearCount() != null) {
Element unknown = doc.createElementNS(GRAPHML_NS, "data");
unknown.setAttribute("key", "num_unknown_publication");
unknown.setTextContent(String.valueOf(collaborator.getUnknownActivityYearCount()));
node.appendChild(unknown);
}
graphMLContent.append("</node>\n");
}
private void generateKeyDefinitionContent(CollaborationData visVOContainer,
StringBuilder graphMLContent) {
private void generateKeyDefinitionContent(CollaborationData visVOContainer, Element rootElement) {
/*
* Generate the key definition content for node.
* */
getKeyDefinitionFromSchema(visVOContainer.getNodeSchema(), graphMLContent);
getKeyDefinitionFromSchema(visVOContainer.getNodeSchema(), rootElement);
/*
* Generate the key definition content for edge.
* */
getKeyDefinitionFromSchema(visVOContainer.getEdgeSchema(), graphMLContent);
getKeyDefinitionFromSchema(visVOContainer.getEdgeSchema(), rootElement);
}
private void getKeyDefinitionFromSchema(Set<Map<String, String>> schema,
StringBuilder graphMLContent) {
for (Map<String, String> currentNodeSchemaAttribute : schema) {
graphMLContent.append("\n<key ");
for (Map.Entry<String, String> currentAttributeKey
: currentNodeSchemaAttribute.entrySet()) {
graphMLContent.append(currentAttributeKey.getKey()
+ "=\"" + currentAttributeKey.getValue()
+ "\" ");
private void getKeyDefinitionFromSchema(Set<Map<String, String>> schema, Element rootElement) {
Document doc = rootElement.getOwnerDocument();
for (Map<String, String> currentNodeSchemaAttribute : schema) {
Element key = doc.createElementNS(GRAPHML_NS, "key");
for (Map.Entry<String, String> currentAttributeKey : currentNodeSchemaAttribute.entrySet()) {
key.setAttribute(currentAttributeKey.getKey(), currentAttributeKey.getValue());
}
if (currentNodeSchemaAttribute.containsKey("default")) {
graphMLContent.append(">\n");
graphMLContent.append("<default>");
graphMLContent.append(currentNodeSchemaAttribute.get("default"));
graphMLContent.append("</default>\n");
graphMLContent.append("</key>\n");
} else {
graphMLContent.append("/>\n");
Element def = doc.createElementNS(GRAPHML_NS, "default");
def.setTextContent(currentNodeSchemaAttribute.get("default"));
key.appendChild(def);
}
rootElement.appendChild(key);
}
}
}

386
api/src/main/java/edu/cornell/mannlib/vitro/webapp/visualization/coprincipalinvestigator/CoPIGraphMLWriter.java
View file

@ -2,6 +2,7 @@
package edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator;
import java.io.StringWriter;
import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
@ -16,47 +17,80 @@ import edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.Collabo
import edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaboratorComparator;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaboration;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory;
import javax.xml.parsers.ParserConfigurationException;
import javax.xml.transform.OutputKeys;
import javax.xml.transform.Transformer;
import javax.xml.transform.TransformerConfigurationException;
import javax.xml.transform.TransformerException;
import javax.xml.transform.TransformerFactory;
import javax.xml.transform.dom.DOMSource;
import javax.xml.transform.stream.StreamResult;
/**
* @author bkoniden
* Deepak Konidena
*/
public class CoPIGraphMLWriter {
private StringBuilder coPIGraphMLContent;
private final String GRAPHML_HEADER = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"
+ " <graphml xmlns=\"http://graphml.graphdrawing.org/xmlns\"\n"
+ " xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"\n"
+ " xsi:schemaLocation=\"http://graphml.graphdrawing.org/xmlns\n"
+ " http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd\">\n\n";
private final String GRAPHML_FOOTER = "</graphml>";
private final String GRAPHML_NS = "http://graphml.graphdrawing.org/xmlns";
public CoPIGraphMLWriter(CollaborationData coPIData) {
coPIGraphMLContent = createCoPIGraphMLContent(coPIData);
}
private StringBuilder createCoPIGraphMLContent(CollaborationData coPIData) {
StringBuilder graphMLContent = new StringBuilder();
graphMLContent.append(GRAPHML_HEADER);
/*
* We are side-effecting "graphMLContent" object in this method since creating
* another String object to hold key definition data will be redundant & will
* not serve the purpose.
* */
generateKeyDefinitionContent(coPIData, graphMLContent);
/*
* Used to generate graph content. It will contain both the nodes & edge information.
* We are side-effecting "graphMLContent".
* */
generateGraphContent(coPIData, graphMLContent);
graphMLContent.append(GRAPHML_FOOTER);
try {
DocumentBuilderFactory docFactory = DocumentBuilderFactory.newInstance();
docFactory.setNamespaceAware(true);
DocumentBuilder docBuilder = docFactory.newDocumentBuilder();
// root elements
Document doc = docBuilder.newDocument();
doc.setXmlVersion("1.0");
Element rootElement = doc.createElementNS(GRAPHML_NS, "graphml");
doc.appendChild(rootElement);
/*
* We are side-effecting "graphMLContent" object in this method since creating
* another String object to hold key definition data will be redundant & will
* not serve the purpose.
* */
generateKeyDefinitionContent(coPIData, rootElement);
/*
* Used to generate graph content. It will contain both the nodes & edge information.
* We are side-effecting "graphMLContent".
* */
generateGraphContent(coPIData, rootElement);
DOMSource source = new DOMSource(doc);
TransformerFactory transFactory = TransformerFactory.newInstance();
Transformer transformer = transFactory.newTransformer();
transformer.setOutputProperty(OutputKeys.ENCODING, "UTF-8");
transformer.setOutputProperty(OutputKeys.INDENT, "yes");
StringWriter writer = new StringWriter();
StreamResult result = new StreamResult(writer);
transformer.transform(source, result);
graphMLContent.append(writer.toString());
} catch (TransformerConfigurationException e) {
throw new IllegalStateException("XML error generating GraphML", e);
} catch (TransformerException e) {
throw new IllegalStateException("XML error generating GraphML", e);
} catch (ParserConfigurationException e) {
throw new IllegalStateException("XML error generating GraphML", e);
}
return graphMLContent;
}
@ -64,118 +98,112 @@ public class CoPIGraphMLWriter {
return coPIGraphMLContent;
}
private void generateGraphContent(CollaborationData coPIData,
StringBuilder graphMLContent) {
graphMLContent.append("\n<graph edgedefault=\"undirected\">\n");
private void generateGraphContent(CollaborationData coPIData, Element rootElement) {
Document doc = rootElement.getOwnerDocument();
Element graph = doc.createElementNS(GRAPHML_NS, "graph");
graph.setAttribute("edgedefault", "undirected");
rootElement.appendChild(graph);
if (coPIData.getCollaborators() != null & coPIData.getCollaborators().size() > 0) {
generateNodeSectionContent(coPIData, graphMLContent);
generateNodeSectionContent(coPIData, graph);
}
if (coPIData.getCollaborations() != null & coPIData.getCollaborations().size() > 0) {
generateEdgeSectionContent(coPIData, graphMLContent);
generateEdgeSectionContent(coPIData, graph);
}
graphMLContent.append("</graph>\n");
}
private void generateEdgeSectionContent(CollaborationData coPIData,
StringBuilder graphMLContent) {
graphMLContent.append("<!-- edges -->\n");
private void generateEdgeSectionContent(CollaborationData coPIData, Element graphElement) {
Document doc = graphElement.getOwnerDocument();
graphElement.appendChild(doc.createComment("edges"));
Set<Collaboration> edges = coPIData.getCollaborations();
List<Collaboration> orderedEdges = new ArrayList<Collaboration>(edges);
Collections.sort(orderedEdges, new CollaborationComparator());
for (Collaboration currentEdge : orderedEdges) {
/*
* This method actually creates the XML code for a single edge. "graphMLContent"
* is being side-effected.
* */
getEdgeContent(graphMLContent, currentEdge);
getEdgeContent(graphElement, currentEdge);
}
}
private void getEdgeContent(StringBuilder graphMLContent, Collaboration currentEdge) {
graphMLContent.append("<edge "
+ "id=\"" + currentEdge.getCollaborationID() + "\" "
+ "source=\"" + currentEdge.getSourceCollaborator()
.getCollaboratorID() + "\" "
+ "target=\"" + currentEdge.getTargetCollaborator()
.getCollaboratorID() + "\" "
+ ">\n");
graphMLContent.append("\t<data key=\"collaborator1\">"
+ currentEdge.getSourceCollaborator().getCollaboratorName()
+ "</data>\n");
graphMLContent.append("\t<data key=\"collaborator2\">"
+ currentEdge.getTargetCollaborator().getCollaboratorName()
+ "</data>\n");
graphMLContent.append("\t<data key=\"number_of_coinvestigated_grants\">"
+ currentEdge.getNumOfCollaborations()
+ "</data>\n");
private void getEdgeContent(Element graphElement, Collaboration currentEdge) {
Document doc = graphElement.getOwnerDocument();
Element edge = doc.createElementNS(GRAPHML_NS, "edge");
edge.setAttribute("id", String.valueOf(currentEdge.getCollaborationID()));
edge.setAttribute("source", String.valueOf(currentEdge.getSourceCollaborator().getCollaboratorID()));
edge.setAttribute("target", String.valueOf(currentEdge.getTargetCollaborator().getCollaboratorID()));
graphElement.appendChild(edge);
Element collaborator1 = doc.createElementNS(GRAPHML_NS, "data");
collaborator1.setAttribute("key", "collaborator1");
collaborator1.setTextContent(currentEdge.getSourceCollaborator().getCollaboratorName());
edge.appendChild(collaborator1);
Element collaborator2 = doc.createElementNS(GRAPHML_NS, "data");
collaborator2.setAttribute("key", "collaborator2");
collaborator2.setTextContent(currentEdge.getTargetCollaborator().getCollaboratorName());
edge.appendChild(collaborator2);
Element works = doc.createElementNS(GRAPHML_NS, "data");
works.setAttribute("key", "number_of_coinvestigated_grants");
works.setTextContent(String.valueOf(currentEdge.getNumOfCollaborations()));
edge.appendChild(works);
if (currentEdge.getEarliestCollaborationYearCount() != null) {
/*
* There is no clean way of getting the map contents in java even though
* we are sure to have only one entry on the map. So using the for loop.
* */
for (Map.Entry<String, Integer> publicationInfo
: currentEdge.getEarliestCollaborationYearCount().entrySet()) {
graphMLContent.append("\t<data key=\"earliest_collaboration\">"
+ publicationInfo.getKey()
+ "</data>\n");
for (Map.Entry<String, Integer> publicationInfo : currentEdge.getEarliestCollaborationYearCount().entrySet()) {
graphMLContent.append("\t<data key=\"num_earliest_collaboration\">"
+ publicationInfo.getValue()
+ "</data>\n");
Element earliest = doc.createElementNS(GRAPHML_NS, "data");
earliest.setAttribute("key", "earliest_collaboration");
earliest.setTextContent(publicationInfo.getKey());
edge.appendChild(earliest);
Element earliestCount = doc.createElementNS(GRAPHML_NS, "data");
earliestCount.setAttribute("key", "num_earliest_collaboration");
earliestCount.setTextContent(publicationInfo.getValue().toString());
edge.appendChild(earliestCount);
}
}
if (currentEdge.getLatestCollaborationYearCount() != null) {
for (Map.Entry<String, Integer> publicationInfo
: currentEdge.getLatestCollaborationYearCount().entrySet()) {
graphMLContent.append("\t<data key=\"latest_collaboration\">"
+ publicationInfo.getKey()
+ "</data>\n");
for (Map.Entry<String, Integer> publicationInfo : currentEdge.getLatestCollaborationYearCount().entrySet()) {
Element latest = doc.createElementNS(GRAPHML_NS, "data");
latest.setAttribute("key", "latest_collaboration");
latest.setTextContent(publicationInfo.getKey());
edge.appendChild(latest);
graphMLContent.append("\t<data key=\"num_latest_collaboration\">"
+ publicationInfo.getValue()
+ "</data>\n");
Element latestCount = doc.createElementNS(GRAPHML_NS, "data");
latestCount.setAttribute("key", "num_latest_collaboration");
latestCount.setTextContent(publicationInfo.getValue().toString());
edge.appendChild(latestCount);
}
}
if (currentEdge.getUnknownCollaborationYearCount() != null) {
graphMLContent.append("\t<data key=\"num_unknown_collaboration\">"
+ currentEdge.getUnknownCollaborationYearCount()
+ "</data>\n");
Element unknown = doc.createElementNS(GRAPHML_NS, "data");
unknown.setAttribute("key", "num_unknown_collaboration");
unknown.setTextContent(String.valueOf(currentEdge.getUnknownCollaborationYearCount()));
edge.appendChild(unknown);
}
graphMLContent.append("</edge>\n");
}
private void generateNodeSectionContent(CollaborationData coPIData,
StringBuilder graphMLContent) {
graphMLContent.append("<!-- nodes -->\n");
private void generateNodeSectionContent(CollaborationData coPIData, Element graphElement) {
Document doc = graphElement.getOwnerDocument();
graphElement.appendChild(doc.createComment("nodes"));
Collaborator egoNode = coPIData.getEgoCollaborator();
Set<Collaborator> piNodes = coPIData.getCollaborators();
@ -185,7 +213,7 @@ public class CoPIGraphMLWriter {
* of the co-pi vis. Ego should always come first.
*
* */
getNodeContent(graphMLContent, egoNode);
getNodeContent(graphElement, egoNode);
List<Collaborator> orderedPINodes = new ArrayList<Collaborator>(piNodes);
orderedPINodes.remove(egoNode);
@ -194,131 +222,119 @@ public class CoPIGraphMLWriter {
for (Collaborator currNode : orderedPINodes) {
/*
* We have already printed the Ego Node info.
* */
if (currNode != egoNode) {
getNodeContent(graphMLContent, currNode);
getNodeContent(graphElement, currNode);
}
}
}
private void getNodeContent(StringBuilder graphMLContent, Collaborator node) {
ParamMap individualProfileURLParams = new ParamMap(
VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY,
node.getCollaboratorURI());
private void getNodeContent(Element graphElement, Collaborator collaborator) {
Document doc = graphElement.getOwnerDocument();
String profileURL = UrlBuilder.getUrl(VisualizationFrameworkConstants.INDIVIDUAL_URL_PREFIX,
individualProfileURLParams);
graphMLContent.append("<node id=\"" + node.getCollaboratorID() + "\">\n");
graphMLContent.append("\t<data key=\"url\">" + node.getCollaboratorURI() + "</data>\n");
graphMLContent.append("\t<data key=\"label\">" + node.getCollaboratorName() + "</data>\n");
ParamMap individualProfileURLParams = new ParamMap(
VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY, collaborator.getCollaboratorURI());
String profileURL = UrlBuilder.getUrl(VisualizationFrameworkConstants.INDIVIDUAL_URL_PREFIX, individualProfileURLParams);
Element node = doc.createElementNS(GRAPHML_NS, "node");
node.setAttribute("id", String.valueOf(collaborator.getCollaboratorID()));
graphElement.appendChild(node);
Element url = doc.createElementNS(GRAPHML_NS, "data");
url.setAttribute("key", "url");
url.setTextContent(collaborator.getCollaboratorURI());
node.appendChild(url);
Element label = doc.createElementNS(GRAPHML_NS, "data");
label.setAttribute("key", "label");
label.setTextContent(collaborator.getCollaboratorName());
node.appendChild(label);
if (profileURL != null) {
graphMLContent.append("\t<data key=\"profile_url\">" + profileURL + "</data>\n");
Element profile = doc.createElementNS(GRAPHML_NS, "data");
profile.setAttribute("key", "profile_url");
profile.setTextContent(profileURL);
node.appendChild(profile);
}
graphMLContent.append("\t<data key=\"number_of_investigated_grants\">"
+ node.getNumOfActivities()
+ "</data>\n");
if (node.getEarliestActivityYearCount() != null) {
Element works = doc.createElementNS(GRAPHML_NS, "data");
works.setAttribute("key", "number_of_investigated_grants");
works.setTextContent(String.valueOf(collaborator.getNumOfActivities()));
node.appendChild(works);
if (collaborator.getEarliestActivityYearCount() != null) {
/*
* There is no clean way of getting the map contents in java even though
* we are sure to have only one entry on the map. So using the for loop.
* I am feeling dirty just about now.
* */
for (Map.Entry<String, Integer> publicationInfo
: node.getEarliestActivityYearCount().entrySet()) {
graphMLContent.append("\t<data key=\"earliest_grant\">"
+ publicationInfo.getKey()
+ "</data>\n");
for (Map.Entry<String, Integer> publicationInfo : collaborator.getEarliestActivityYearCount().entrySet()) {
Element earliest = doc.createElementNS(GRAPHML_NS, "data");
earliest.setAttribute("key", "earliest_grant");
earliest.setTextContent(publicationInfo.getKey());
node.appendChild(earliest);
graphMLContent.append("\t<data key=\"num_earliest_grant\">"
+ publicationInfo.getValue()
+ "</data>\n");
Element earliestCount = doc.createElementNS(GRAPHML_NS, "data");
earliestCount.setAttribute("key", "num_earliest_grant");
earliestCount.setTextContent(publicationInfo.getValue().toString());
node.appendChild(earliestCount);
}
}
if (node.getLatestActivityYearCount() != null) {
for (Map.Entry<String, Integer> publicationInfo
: node.getLatestActivityYearCount().entrySet()) {
graphMLContent.append("\t<data key=\"latest_grant\">"
+ publicationInfo.getKey()
+ "</data>\n");
if (collaborator.getLatestActivityYearCount() != null) {
for (Map.Entry<String, Integer> publicationInfo : collaborator.getLatestActivityYearCount().entrySet()) {
Element latest = doc.createElementNS(GRAPHML_NS, "data");
latest.setAttribute("key", "latest_grant");
latest.setTextContent(publicationInfo.getKey());
node.appendChild(latest);
graphMLContent.append("\t<data key=\"num_latest_grant\">"
+ publicationInfo.getValue()
+ "</data>\n");
Element latestCount = doc.createElementNS(GRAPHML_NS, "data");
latestCount.setAttribute("key", "num_latest_grant");
latestCount.setTextContent(publicationInfo.getValue().toString());
node.appendChild(latestCount);
}
}
if (node.getUnknownActivityYearCount() != null) {
graphMLContent.append("\t<data key=\"num_unknown_grant\">"
+ node.getUnknownActivityYearCount()
+ "</data>\n");
if (collaborator.getUnknownActivityYearCount() != null) {
Element unknown = doc.createElementNS(GRAPHML_NS, "data");
unknown.setAttribute("key", "num_unknown_grant");
unknown.setTextContent(String.valueOf(collaborator.getUnknownActivityYearCount()));
node.appendChild(unknown);
}
graphMLContent.append("</node>\n");
}
private void generateKeyDefinitionContent(CollaborationData coPIData,
StringBuilder graphMLContent) {
private void generateKeyDefinitionContent(CollaborationData coPIData, Element rootElement) {
/*
* Generate the key definition content for node.
* */
getKeyDefinitionFromSchema(coPIData.getNodeSchema(), graphMLContent);
getKeyDefinitionFromSchema(coPIData.getNodeSchema(), rootElement);
/*
* Generate the key definition content for edge.
* */
getKeyDefinitionFromSchema(coPIData.getEdgeSchema(), graphMLContent);
getKeyDefinitionFromSchema(coPIData.getEdgeSchema(), rootElement);
}
private void getKeyDefinitionFromSchema(Set<Map<String, String>> schema,
StringBuilder graphMLContent) {
for (Map<String, String> currentNodeSchemaAttribute : schema) {
graphMLContent.append("\n<key ");
for (Map.Entry<String, String> currentAttributeKey
: currentNodeSchemaAttribute.entrySet()) {
graphMLContent.append(currentAttributeKey.getKey()
+ "=\"" + currentAttributeKey.getValue()
+ "\" ");
private void getKeyDefinitionFromSchema(Set<Map<String, String>> schema, Element rootElement) {
Document doc = rootElement.getOwnerDocument();
for (Map<String, String> currentNodeSchemaAttribute : schema) {
Element key = doc.createElementNS(GRAPHML_NS, "key");
for (Map.Entry<String, String> currentAttributeKey : currentNodeSchemaAttribute.entrySet()) {
key.setAttribute(currentAttributeKey.getKey(), currentAttributeKey.getValue());
}
if (currentNodeSchemaAttribute.containsKey("default")) {
graphMLContent.append(">\n");
graphMLContent.append("<default>");
graphMLContent.append(currentNodeSchemaAttribute.get("default"));
graphMLContent.append("</default>\n");
graphMLContent.append("</key>\n");
} else {
graphMLContent.append("/>\n");
Element def = doc.createElementNS(GRAPHML_NS, "default");
def.setTextContent(currentNodeSchemaAttribute.get("default"));
key.appendChild(def);
}
rootElement.appendChild(key);
}
}
}

144
api/src/main/java/edu/cornell/mannlib/vitro/webapp/visualization/personpubcount/CumulativeCountRequestHandler.java Normal file
View file

@ -0,0 +1,144 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.visualization.personpubcount;
import edu.cornell.mannlib.vitro.webapp.auth.requestedAction.AuthorizationRequest;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.QueryRunner;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.VisualizationRequestHandler;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.logging.Log;
import org.apache.jena.query.Dataset;
import java.util.ArrayList;
import java.util.Calendar;
import java.util.Collections;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.TreeMap;
public class CumulativeCountRequestHandler implements VisualizationRequestHandler {
@Override
public AuthorizationRequest getRequiredPrivileges() {
return null;
}
@Override
public ResponseValues generateStandardVisualization(VitroRequest vitroRequest, Log log, Dataset dataSource) throws MalformedQueryParametersException {
return null;
}
@Override
public ResponseValues generateVisualizationForShortURLRequests(Map<String, String> parameters, VitroRequest vitroRequest, Log log, Dataset dataSource) throws MalformedQueryParametersException {
return null;
}
@Override
public Object generateAjaxVisualization(VitroRequest vitroRequest, Log log, Dataset dataSource) throws MalformedQueryParametersException {
String personURI = vitroRequest.getParameter("uri");
QueryRunner<Set<Activity>> queryManager = new PersonPublicationCountQueryRunner(
personURI,
vitroRequest.getRDFService(),
log);
Set<Activity> authorDocuments = queryManager.getQueryResult();
Map<Integer, Map<String, Integer>> yearToTypeCount = new TreeMap<Integer, Map<String, Integer>>();
for (Activity currentActivity : authorDocuments) {
String activityYearStr = currentActivity.getParsedActivityYear();
Integer activityYear;
try {
activityYear = Integer.parseInt(activityYearStr, 10);
} catch (NumberFormatException nfe) {
activityYear = 0;
}
Map<String, Integer> typeCounts;
if (yearToTypeCount.containsKey(activityYear)) {
typeCounts = yearToTypeCount.get(activityYear);
} else {
typeCounts = new TreeMap<String, Integer>();
yearToTypeCount.put(activityYear, typeCounts);
}
String activityType = currentActivity.getActivityType();
if (StringUtils.isEmpty(activityType)) {
activityType = "http://purl.org/ontology/bibo/Document";
}
if (typeCounts.containsKey(activityType)) {
typeCounts.put(activityType, typeCounts.get(activityType) + 1);
} else {
typeCounts.put(activityType, 1);
}
}
StringBuilder csv = new StringBuilder();
csv.append("Year,Previous,Other,Books,Articles\n");
int currentYear = Calendar.getInstance().get(Calendar.YEAR);
List<Integer> years = new ArrayList<Integer>(yearToTypeCount.keySet());
for (int year = currentYear - 9; year < currentYear + 1; year++) {
if (!years.contains(year)) {
years.add(year);
}
}
Collections.sort(years);
int publicationCount = 0;
for (Integer year : years) {
if (year < currentYear - 9) {
if (yearToTypeCount.containsKey(year)) {
Map<String, Integer> typeCounts = yearToTypeCount.get(year);
for (Map.Entry<String, Integer> entry : typeCounts.entrySet()) {
publicationCount += entry.getValue();
}
}
} else {
int articleCount = 0;
int bookCount = 0;
int otherCount = 0;
if (yearToTypeCount.containsKey(year)) {
Map<String, Integer> typeCounts = yearToTypeCount.get(year);
for (Map.Entry<String, Integer> entry : typeCounts.entrySet()) {
if ("http://purl.org/ontology/bibo/AcademicArticle".equalsIgnoreCase(entry.getKey()) ||
"http://purl.org/ontology/bibo/Article".equalsIgnoreCase(entry.getKey()) ) {
articleCount += entry.getValue();
} else if ("http://purl.org/ontology/bibo/Book".equalsIgnoreCase(entry.getKey()) ||
"http://purl.org/ontology/bibo/BookSection".equalsIgnoreCase(entry.getKey()) ||
"http://purl.org/ontology/bibo/Chapter".equalsIgnoreCase(entry.getKey()) ||
"http://purl.org/ontology/bibo/EditedBook".equalsIgnoreCase(entry.getKey()) ) {
bookCount += entry.getValue();
} else {
otherCount += entry.getValue();
}
}
}
csv.append(year).append(",")
.append(publicationCount).append(",")
.append(otherCount).append(",")
.append(bookCount).append(",")
.append(articleCount).append("\n");
publicationCount += articleCount + bookCount + otherCount;
}
}
return csv.toString();
}
@Override
public Map<String, String> generateDataVisualization(VitroRequest vitroRequest, Log log, Dataset dataset) throws MalformedQueryParametersException {
return null;
}
}

12
api/src/main/java/edu/cornell/mannlib/vitro/webapp/visualization/personpubcount/PersonPublicationCountQueryRunner.java
View file

@ -75,6 +75,7 @@ public class PersonPublicationCountQueryRunner implements QueryRunner<Set<Activi
+ "{\n"
+ " <" + queryURI + "> rdfs:label ?authorName .\n"
+ " <" + queryURI + "> core:authorOf ?document .\n"
+ " ?document vitro:mostSpecificType ?publicationType .\n"
+ " ?document core:publicationDate ?publicationDate .\n"
+ "}\n"
+ "WHERE"
@ -86,7 +87,8 @@ public class PersonPublicationCountQueryRunner implements QueryRunner<Set<Activi
+ " ?authorshipNode rdf:type core:Authorship ; \n"
+ " core:relates ?document . \n"
+ " ?document rdf:type bibo:Document ; \n"
+ " rdfs:label ?documentLabel .\n"
+ " rdfs:label ?documentLabel ;\n"
+ " vitro:mostSpecificType ?publicationType .\n"
+ " } UNION {\n"
+ " <" + queryURI + "> rdf:type foaf:Person ;\n"
+ " core:relatedBy ?authorshipNode . \n"
@ -106,9 +108,10 @@ public class PersonPublicationCountQueryRunner implements QueryRunner<Set<Activi
private String getSparqlQuery(String queryURI) {
String sparqlQuery = QueryConstants.getSparqlPrefixQuery()
+ "SELECT ?document ?publicationDate\n"
+ "SELECT ?document ?publicationType ?publicationDate\n"
+ "WHERE { \n"
+ " <" + queryURI + "> core:authorOf ?document . \n"
+ " OPTIONAL { ?document vitro:mostSpecificType ?publicationType . } .\n"
+ " OPTIONAL { ?document core:publicationDate ?publicationDate . } .\n"
+ "}\n";
@ -172,6 +175,11 @@ public class PersonPublicationCountQueryRunner implements QueryRunner<Set<Activi
biboDocument.setActivityDate(publicationDateNode.asLiteral().getString());
}
RDFNode publicationType = qs.get("publicationType");
if (publicationType != null) {
biboDocument.setActivityType(publicationType.asResource().getURI());
}
authorDocuments.add(biboDocument);
}

5
api/src/main/java/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/Activity.java
View file

@ -14,6 +14,7 @@ import edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions;
public class Activity extends Individual {
private String activityDate;
private String activityType;
public Activity(String activityURI) {
super(activityURI);
@ -30,6 +31,10 @@ public class Activity extends Individual {
public void setActivityLabel(String activityLabel) {
this.setIndividualLabel(activityLabel);
}
public String getActivityType() { return this.activityType; }
public void setActivityType(String activityType) { this.activityType = activityType; }
/**
* This method will be called to get the final/inferred year for the publication.

2
home/src/main/resources/config/example.runtime.properties
View file

@ -312,7 +312,7 @@ VitroConnection.DataSource.validationQuery = SELECT 1
# Freemarker template or to a Java class would not cause the page to be
# considered stale.
#
# http.createCacheHeaders = true
http.createCacheHeaders = true
#
# Absolute path on the server of the Harvester root directory.

32
pom.xml
View file

@ -111,6 +111,33 @@
<javadoc.opts>-Xdoclint:none</javadoc.opts>
</properties>
</profile>
<profile>
<id>dependency-check</id>
<activation>
<property>
<name>dependency-check</name>
</property>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.owasp</groupId>
<artifactId>dependency-check-maven</artifactId>
<configuration>
<skipProvidedScope>true</skipProvidedScope>
<skipRuntimeScope>true</skipRuntimeScope>
</configuration>
<executions>
<execution>
<goals>
<goal>check</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
<profile>
<id>release</id>
<build>
@ -238,6 +265,11 @@
</plugins>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.owasp</groupId>
<artifactId>dependency-check-maven</artifactId>
<version>2.0.1</version>
</plugin>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<version>2.5.5</version>

2
selenium/test-output/index.html
View file

@ -16,7 +16,7 @@
var suiteTableData = new Array();
</script>
<!--
<script type="text/javascript" src="jquery-ui/js/jquery-ui-1.8.16.custom.min.js"></script>
<script type="text/javascript" src="jquery-ui/js/jquery-ui-1.12.1.custom.min.js"></script>
-->
</head>

7
webapp/src/main/webapp/WEB-INF/visualization/visualizations-beans-injection-fm.xml
View file

@ -12,6 +12,9 @@
<bean id="capability_map"
class="edu.cornell.mannlib.vitro.webapp.visualization.capabilitymap.CapabilityMapRequestHandler" />
<bean id="cumulative_pub_count"
class="edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.CumulativeCountRequestHandler" />
<bean id="person_pub_count"
class="edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.PersonPublicationCountRequestHandler" />
@ -53,6 +56,10 @@
<ref bean="capability_map"></ref>
</entry>
<entry key="cumulative_pub_count">
<ref bean="cumulative_pub_count"></ref>
</entry>
<entry key="person_pub_count">
<ref bean="person_pub_count"></ref>
</entry>

8
webapp/src/main/webapp/css/visualization/capabilitymap/graph.css
View file

@ -246,17 +246,17 @@ ul.visible {
position:relative;
top:-2px;
}
.progress, .progress div {
.capability-progress, .capability-progress div {
height:10px;
margin-bottom:-10px;
}
.progress {
.capability-progress {
position:absolute;
top:0px;
left:0px;
width:100%;
}
.progress div {
.capability-progress div {
background-color:#9999FF;
width:0%;
white-space:nowrap;
@ -268,7 +268,7 @@ hr {
background:#efefef;
}
.tabs {
width: auto;
width: 300px;
margin-bottom: 15px;
border: 0;
z-index: 10;

13
webapp/src/main/webapp/js/d3.min.js vendored
View file

File diff suppressed because one or more lines are too long

5
webapp/src/main/webapp/js/visualization/capabilitymap/d3v3.min.js vendored Normal file
View file

File diff suppressed because one or more lines are too long

2
webapp/src/main/webapp/js/visualization/capabilitymap/graph_new.js
View file

@ -1009,7 +1009,7 @@ var unhide = function() {
$("#resetButton").removeAttr("disabled");
if ($(window).width() > 1230) {
$("#container").css("box-shadow", "0px 0px 20px -6px #000000");
$("#container").animate({"height" : "600px", "width" : "1200px", "margin-left" : "-130px"}, 500);
$("#container").animate({"height" : "600px", "width" : "1200px", "margin-bottom" : "20px", "margin-left" : (($("#main-content").width() - 1200) / 2) + "px"}, 500);
$("#center-container").css("width", "900px");
} else {
$("#container").animate({"height" : "600px"});

3
webapp/src/main/webapp/templates/freemarker/body/partials/individual/propStatement-authorInAuthorship.ftl
View file

@ -139,12 +139,13 @@
<#assign plumIdParam = "oclc=${statement.oclc}">
</#if>
<#if plumIdParam??>
<div class="plum-print-wrapper" style="display: inline-block">
<div class="plum-print-wrapper" style="display: inline-block; vertical-align: top">
<a class="plumx-plum-print-popup"
href="https://plu.mx/plum/a/?${plumIdParam}"
data-popup="hidden"
data-hide-when-empty="${plumPrintHideEmpty}"
data-site="plum"
data-size="tiny"
data-badge="true"></a>
</div>
</#if>

4
webapp/src/main/webapp/templates/freemarker/visualization/capabilitymap/capabilityMap.ftl
View file

@ -1,6 +1,6 @@
${scripts.add(
'<script type="text/javascript" src="${urls.base}/js/d3.min.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/jquery-ui/js/jquery-ui-1.12.1.min.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/visualization/capabilitymap/d3v3.min.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/visualization/capabilitymap/jquery.color.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/visualization/capabilitymap/jsr_class.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/visualization/capabilitymap/graph_new.js"></script>'
@ -112,7 +112,7 @@ ${stylesheets.add(
<div id="center-container">
<div id="log"></div>
<div id="infovis"></div>
<div class="progress"><div id="progressbar"></div></div>
<div class="capability-progress"><div id="progressbar"></div></div>
</div>
<div id="right-container">

2
webapp/src/main/webapp/templates/freemarker/visualization/entitycomparison/entityComparisonSetup.ftl
View file

@ -139,7 +139,7 @@ ${scripts.add('<!--[if IE]><script type="text/javascript" src="${urls.base}/js/v
'<script type="text/javascript" src="${urls.base}/js/visualization/entitycomparison/jquery_plugins/flot/r293/jquery.flot.min.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/visualization/entitycomparison/jquery_plugins/jquery-jangle.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/jquery-ui/js/jquery-ui-1.12.1.min.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/jquery_plugins/jquery.blockUI.min.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/jquery_plugins/jquery.blockUI.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/jquery_plugins/datatable/1.10.12/jquery.dataTables.min.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/visualization/entitycomparison/util.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/visualization/entitycomparison/constants.js"></script>',

4
webapp/src/main/webapp/templates/freemarker/visualization/mapOfScience/mapOfScienceSetup.ftl
View file

@ -113,7 +113,7 @@ var i18nStrings = {
${scripts.add('<script type="text/javascript" src="http://maps.google.com/maps/api/js?sensor=false"></script>')}
</#if>
${scripts.add('<script type="text/javascript" src="${urls.base}/js/jquery-ui/js/jquery-ui-1.12.1.min.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/jquery_plugins/jquery.blockUI.min.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/jquery_plugins/jquery.blockUI.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/jquery_plugins/datatable/1.10.12/jquery.dataTables.min.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/visualization/dataTables.helper.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/visualization/visualization-helper-functions.js"></script>',
@ -140,7 +140,7 @@ ${scripts.add('<script type="text/javascript" src="${urls.base}/js/jquery-ui/js/
'<script type="text/javascript" src="${urls.base}/js/visualization/mapofscience/ComparisonDataTableWidget.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/visualization/mapofscience/VisModeControllers.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/visualization/mapofscience/VisCommonControl.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/visualization/mapofscience/InitializeMap.js"></script>')}
'<script type="text/javascript" src="${urls.base}/js/visualization/mapofscience/InitializeMap.js"></script>')}
<#-- CSS files -->

35
webapp/src/main/webapp/templates/freemarker/visualization/personlevel/coAuthorPersonLevelD3.ftl
View file

@ -115,10 +115,9 @@ $(document).ready(function(){
uris.push("${collaborator.collaboratorURI}");
</#list>
var chord = d3.layout.chord()
.padding(0.05)
.sortSubgroups(d3.descending)
.matrix(matrix);
var chord = d3.chord()
.padAngle(0.05)
.sortSubgroups(d3.descending);
var width = 725;
var height = 725;
@ -126,17 +125,25 @@ $(document).ready(function(){
var inner_radius = Math.min(width, height) * 0.37;
var outer_radius = Math.min(width, height) * 0.39;
var fill = d3.scale.category10();
var fill = d3.scaleOrdinal()
.domain(d3.range(20))
.range(["#000000", "#1f77b4", "#aec7e8", "#ff7f0e", "#ffbb78",
"#2ca02c", "#98df8a", "#d62728", "#ff9896", "#9467bd",
"#c5b0d5", "#8c564b", "#c49c94", "#e377c2", "#f7b6d2",
"#7f7f7f", "#c7c7c7", "#bcbd22", "#dbdb8d", "#17becf"
]);
// #9edae5
var svg = d3.select('#chord').append('svg')
.attr('width', width+padding)
.attr('height', height+padding)
.append('g').attr('transform', 'translate(' + (width+padding) / 2 + ',' + (height+padding) / 2 +')');
.append('g').attr('transform', 'translate(' + (width+padding) / 2 + ',' + (height+padding) / 2 +')')
.datum(chord(matrix));
svg.append('g').selectAll('path').data(chord.groups).enter()
.append('path').style('fill', function(val) { return val.index == 0 ? "#000000" : fill(val.index); })
.style('stroke', function(val) { return val.index == 0 ? "#000000" : fill(val.index); })
.attr('d', d3.svg.arc().innerRadius(inner_radius).outerRadius(outer_radius))
svg.append('g').selectAll('path').data(function(chords) { return chords.groups; }).enter()
.append('path').style('fill', function(val) { return fill(val.index); })
.style('stroke', function(val) { return fill(val.index); })
.attr('d', d3.arc().innerRadius(inner_radius).outerRadius(outer_radius))
.on('click', chord_click())
.on("mouseover", chord_hover(.05))
.on("mouseout", chord_hover(.8));
@ -153,7 +160,7 @@ $(document).ready(function(){
var chord_ticks = svg.append('g')
.selectAll('g')
.data(chord.groups)
.data(function (chords) { return chords.groups; })
.enter().append('g')
.selectAll('g')
.data(group_ticks)
@ -165,14 +172,14 @@ $(document).ready(function(){
svg.append('g')
.attr('class', 'chord')
.selectAll('path')
.data(chord.chords)
.data(function (chords) { return chords; })
.enter().append('path')
.style('fill', function (d) { return fill(d.target.index); })
.attr('d', d3.svg.chord().radius(inner_radius))
.attr('d', d3.ribbon().radius(inner_radius))
.style('opacity', .8);
svg.append("g").selectAll(".arc")
.data(chord.groups)
.data(function (chords) { return chords.groups; })
.enter().append("svg:text")
.attr("dy", ".35em")
.attr("style", function(d) { return d.index == 0 ? "font-size: .75em; font-weight: bold;" : "font-size: .70em;"; } )

35
webapp/src/main/webapp/templates/freemarker/visualization/personlevel/coPIPersonLevelD3.ftl
View file

@ -119,10 +119,9 @@ $(document).ready(function(){
uris.push("${collaborator.collaboratorURI}");
</#list>
var chord = d3.layout.chord()
.padding(0.05)
.sortSubgroups(d3.descending)
.matrix(matrix);
var chord = d3.chord()
.padAngle(0.05)
.sortSubgroups(d3.descending);
var width = 725;
var height = 725;
@ -130,17 +129,25 @@ $(document).ready(function(){
var inner_radius = Math.min(width, height) * 0.37;
var outer_radius = Math.min(width, height) * 0.39;
var fill = d3.scale.category10();
var fill = d3.scaleOrdinal()
.domain(d3.range(20))
.range(["#000000", "#1f77b4", "#aec7e8", "#ff7f0e", "#ffbb78",
"#2ca02c", "#98df8a", "#d62728", "#ff9896", "#9467bd",
"#c5b0d5", "#8c564b", "#c49c94", "#e377c2", "#f7b6d2",
"#7f7f7f", "#c7c7c7", "#bcbd22", "#dbdb8d", "#17becf"
]);
// #9edae5
var svg = d3.select('#chord').append('svg')
.attr('width', width+padding)
.attr('height', height+padding)
.append('g').attr('transform', 'translate(' + (width+padding) / 2 + ',' + (height+padding) / 2 +')');
.append('g').attr('transform', 'translate(' + (width+padding) / 2 + ',' + (height+padding) / 2 +')')
.datum(chord(matrix));
svg.append('g').selectAll('path').data(chord.groups).enter()
.append('path').style('fill', function(val) { return val.index == 0 ? "#000000" : fill(val.index); })
.style('stroke', function(val) { return val.index == 0 ? "#000000" : fill(val.index); })
.attr('d', d3.svg.arc().innerRadius(inner_radius).outerRadius(outer_radius))
svg.append('g').selectAll('path').data(function(chords) { return chords.groups; }).enter()
.append('path').style('fill', function(val) { return fill(val.index); })
.style('stroke', function(val) { return fill(val.index); })
.attr('d', d3.arc().innerRadius(inner_radius).outerRadius(outer_radius))
.on('click', chord_click())
.on("mouseover", chord_hover(.05))
.on("mouseout", chord_hover(.8));
@ -157,7 +164,7 @@ $(document).ready(function(){
var chord_ticks = svg.append('g')
.selectAll('g')
.data(chord.groups)
.data(function (chords) { return chords.groups; })
.enter().append('g')
.selectAll('g')
.data(group_ticks)
@ -169,14 +176,14 @@ $(document).ready(function(){
svg.append('g')
.attr('class', 'chord')
.selectAll('path')
.data(chord.chords)
.data(function (chords) { return chords; })
.enter().append('path')
.style('fill', function (d) { return fill(d.target.index); })
.attr('d', d3.svg.chord().radius(inner_radius))
.attr('d', d3.ribbon().radius(inner_radius))
.style('opacity', .8);
svg.append("g").selectAll(".arc")
.data(chord.groups)
.data(function (chords) { return chords.groups; })
.enter().append("svg:text")
.attr("dy", ".35em")
.attr("style", function(d) { return d.index == 0 ? "font-size: .75em; font-weight: bold;" : "font-size: .70em;"; } )

587
webapp/src/main/webapp/themes/tenderfoot/bootstrap/css/bootstrap-theme.css vendored Normal file
View file

@ -0,0 +1,587 @@
/*!
* Bootstrap v3.3.7 (http://getbootstrap.com)
* Copyright 2011-2016 Twitter, Inc.
* Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
*/
.btn-default,
.btn-primary,
.btn-success,
.btn-info,
.btn-warning,
.btn-danger {
text-shadow: 0 -1px 0 rgba(0, 0, 0, .2);
-webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 1px rgba(0, 0, 0, .075);
box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 1px rgba(0, 0, 0, .075);
}
.btn-default:active,
.btn-primary:active,
.btn-success:active,
.btn-info:active,
.btn-warning:active,
.btn-danger:active,
.btn-default.active,
.btn-primary.active,
.btn-success.active,
.btn-info.active,
.btn-warning.active,
.btn-danger.active {
-webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
}
.btn-default.disabled,
.btn-primary.disabled,
.btn-success.disabled,
.btn-info.disabled,
.btn-warning.disabled,
.btn-danger.disabled,
.btn-default[disabled],
.btn-primary[disabled],
.btn-success[disabled],
.btn-info[disabled],
.btn-warning[disabled],
.btn-danger[disabled],
fieldset[disabled] .btn-default,
fieldset[disabled] .btn-primary,
fieldset[disabled] .btn-success,
fieldset[disabled] .btn-info,
fieldset[disabled] .btn-warning,
fieldset[disabled] .btn-danger {
-webkit-box-shadow: none;
box-shadow: none;
}
.btn-default .badge,
.btn-primary .badge,
.btn-success .badge,
.btn-info .badge,
.btn-warning .badge,
.btn-danger .badge {
text-shadow: none;
}
.btn:active,
.btn.active {
background-image: none;
}
.btn-default {
text-shadow: 0 1px 0 #fff;
background-image: -webkit-linear-gradient(top, #fff 0%, #e0e0e0 100%);
background-image: -o-linear-gradient(top, #fff 0%, #e0e0e0 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#fff), to(#e0e0e0));
background-image: linear-gradient(to bottom, #fff 0%, #e0e0e0 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#ffe0e0e0', GradientType=0);
filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
background-repeat: repeat-x;
border-color: #dbdbdb;
border-color: #ccc;
}
.btn-default:hover,
.btn-default:focus {
background-color: #e0e0e0;
background-position: 0 -15px;
}
.btn-default:active,
.btn-default.active {
background-color: #e0e0e0;
border-color: #dbdbdb;
}
.btn-default.disabled,
.btn-default[disabled],
fieldset[disabled] .btn-default,
.btn-default.disabled:hover,
.btn-default[disabled]:hover,
fieldset[disabled] .btn-default:hover,
.btn-default.disabled:focus,
.btn-default[disabled]:focus,
fieldset[disabled] .btn-default:focus,
.btn-default.disabled.focus,
.btn-default[disabled].focus,
fieldset[disabled] .btn-default.focus,
.btn-default.disabled:active,
.btn-default[disabled]:active,
fieldset[disabled] .btn-default:active,
.btn-default.disabled.active,
.btn-default[disabled].active,
fieldset[disabled] .btn-default.active {
background-color: #e0e0e0;
background-image: none;
}
.btn-primary {
background-image: -webkit-linear-gradient(top, #337ab7 0%, #265a88 100%);
background-image: -o-linear-gradient(top, #337ab7 0%, #265a88 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#337ab7), to(#265a88));
background-image: linear-gradient(to bottom, #337ab7 0%, #265a88 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff265a88', GradientType=0);
filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
background-repeat: repeat-x;
border-color: #245580;
}
.btn-primary:hover,
.btn-primary:focus {
background-color: #265a88;
background-position: 0 -15px;
}
.btn-primary:active,
.btn-primary.active {
background-color: #265a88;
border-color: #245580;
}
.btn-primary.disabled,
.btn-primary[disabled],
fieldset[disabled] .btn-primary,
.btn-primary.disabled:hover,
.btn-primary[disabled]:hover,
fieldset[disabled] .btn-primary:hover,
.btn-primary.disabled:focus,
.btn-primary[disabled]:focus,
fieldset[disabled] .btn-primary:focus,
.btn-primary.disabled.focus,
.btn-primary[disabled].focus,
fieldset[disabled] .btn-primary.focus,
.btn-primary.disabled:active,
.btn-primary[disabled]:active,
fieldset[disabled] .btn-primary:active,
.btn-primary.disabled.active,
.btn-primary[disabled].active,
fieldset[disabled] .btn-primary.active {
background-color: #265a88;
background-image: none;
}
.btn-success {
background-image: -webkit-linear-gradient(top, #5cb85c 0%, #419641 100%);
background-image: -o-linear-gradient(top, #5cb85c 0%, #419641 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#5cb85c), to(#419641));
background-image: linear-gradient(to bottom, #5cb85c 0%, #419641 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5cb85c', endColorstr='#ff419641', GradientType=0);
filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
background-repeat: repeat-x;
border-color: #3e8f3e;
}
.btn-success:hover,
.btn-success:focus {
background-color: #419641;
background-position: 0 -15px;
}
.btn-success:active,
.btn-success.active {
background-color: #419641;
border-color: #3e8f3e;
}
.btn-success.disabled,
.btn-success[disabled],
fieldset[disabled] .btn-success,
.btn-success.disabled:hover,
.btn-success[disabled]:hover,
fieldset[disabled] .btn-success:hover,
.btn-success.disabled:focus,
.btn-success[disabled]:focus,
fieldset[disabled] .btn-success:focus,
.btn-success.disabled.focus,
.btn-success[disabled].focus,
fieldset[disabled] .btn-success.focus,
.btn-success.disabled:active,
.btn-success[disabled]:active,
fieldset[disabled] .btn-success:active,
.btn-success.disabled.active,
.btn-success[disabled].active,
fieldset[disabled] .btn-success.active {
background-color: #419641;
background-image: none;
}
.btn-info {
background-image: -webkit-linear-gradient(top, #5bc0de 0%, #2aabd2 100%);
background-image: -o-linear-gradient(top, #5bc0de 0%, #2aabd2 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#5bc0de), to(#2aabd2));
background-image: linear-gradient(to bottom, #5bc0de 0%, #2aabd2 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff2aabd2', GradientType=0);
filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
background-repeat: repeat-x;
border-color: #28a4c9;
}
.btn-info:hover,
.btn-info:focus {
background-color: #2aabd2;
background-position: 0 -15px;
}
.btn-info:active,
.btn-info.active {
background-color: #2aabd2;
border-color: #28a4c9;
}
.btn-info.disabled,
.btn-info[disabled],
fieldset[disabled] .btn-info,
.btn-info.disabled:hover,
.btn-info[disabled]:hover,
fieldset[disabled] .btn-info:hover,
.btn-info.disabled:focus,
.btn-info[disabled]:focus,
fieldset[disabled] .btn-info:focus,
.btn-info.disabled.focus,
.btn-info[disabled].focus,
fieldset[disabled] .btn-info.focus,
.btn-info.disabled:active,
.btn-info[disabled]:active,
fieldset[disabled] .btn-info:active,
.btn-info.disabled.active,
.btn-info[disabled].active,
fieldset[disabled] .btn-info.active {
background-color: #2aabd2;
background-image: none;
}
.btn-warning {
background-image: -webkit-linear-gradient(top, #f0ad4e 0%, #eb9316 100%);
background-image: -o-linear-gradient(top, #f0ad4e 0%, #eb9316 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#f0ad4e), to(#eb9316));
background-image: linear-gradient(to bottom, #f0ad4e 0%, #eb9316 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff0ad4e', endColorstr='#ffeb9316', GradientType=0);
filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
background-repeat: repeat-x;
border-color: #e38d13;
}
.btn-warning:hover,
.btn-warning:focus {
background-color: #eb9316;
background-position: 0 -15px;
}
.btn-warning:active,
.btn-warning.active {
background-color: #eb9316;
border-color: #e38d13;
}
.btn-warning.disabled,
.btn-warning[disabled],
fieldset[disabled] .btn-warning,
.btn-warning.disabled:hover,
.btn-warning[disabled]:hover,
fieldset[disabled] .btn-warning:hover,
.btn-warning.disabled:focus,
.btn-warning[disabled]:focus,
fieldset[disabled] .btn-warning:focus,
.btn-warning.disabled.focus,
.btn-warning[disabled].focus,
fieldset[disabled] .btn-warning.focus,
.btn-warning.disabled:active,
.btn-warning[disabled]:active,
fieldset[disabled] .btn-warning:active,
.btn-warning.disabled.active,
.btn-warning[disabled].active,
fieldset[disabled] .btn-warning.active {
background-color: #eb9316;
background-image: none;
}
.btn-danger {
background-image: -webkit-linear-gradient(top, #d9534f 0%, #c12e2a 100%);
background-image: -o-linear-gradient(top, #d9534f 0%, #c12e2a 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#d9534f), to(#c12e2a));
background-image: linear-gradient(to bottom, #d9534f 0%, #c12e2a 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9534f', endColorstr='#ffc12e2a', GradientType=0);
filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
background-repeat: repeat-x;
border-color: #b92c28;
}
.btn-danger:hover,
.btn-danger:focus {
background-color: #c12e2a;
background-position: 0 -15px;
}
.btn-danger:active,
.btn-danger.active {
background-color: #c12e2a;
border-color: #b92c28;
}
.btn-danger.disabled,
.btn-danger[disabled],
fieldset[disabled] .btn-danger,
.btn-danger.disabled:hover,
.btn-danger[disabled]:hover,
fieldset[disabled] .btn-danger:hover,
.btn-danger.disabled:focus,
.btn-danger[disabled]:focus,
fieldset[disabled] .btn-danger:focus,
.btn-danger.disabled.focus,
.btn-danger[disabled].focus,
fieldset[disabled] .btn-danger.focus,
.btn-danger.disabled:active,
.btn-danger[disabled]:active,
fieldset[disabled] .btn-danger:active,
.btn-danger.disabled.active,
.btn-danger[disabled].active,
fieldset[disabled] .btn-danger.active {
background-color: #c12e2a;
background-image: none;
}
.thumbnail,
.img-thumbnail {
-webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
}
.dropdown-menu > li > a:hover,
.dropdown-menu > li > a:focus {
background-color: #e8e8e8;
background-image: -webkit-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);
background-image: -o-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#f5f5f5), to(#e8e8e8));
background-image: linear-gradient(to bottom, #f5f5f5 0%, #e8e8e8 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff5f5f5', endColorstr='#ffe8e8e8', GradientType=0);
background-repeat: repeat-x;
}
.dropdown-menu > .active > a,
.dropdown-menu > .active > a:hover,
.dropdown-menu > .active > a:focus {
background-color: #2e6da4;
background-image: -webkit-linear-gradient(top, #337ab7 0%, #2e6da4 100%);
background-image: -o-linear-gradient(top, #337ab7 0%, #2e6da4 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#337ab7), to(#2e6da4));
background-image: linear-gradient(to bottom, #337ab7 0%, #2e6da4 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff2e6da4', GradientType=0);
background-repeat: repeat-x;
}
.navbar-default {
background-image: -webkit-linear-gradient(top, #fff 0%, #f8f8f8 100%);
background-image: -o-linear-gradient(top, #fff 0%, #f8f8f8 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#fff), to(#f8f8f8));
background-image: linear-gradient(to bottom, #fff 0%, #f8f8f8 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#fff8f8f8', GradientType=0);
filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
background-repeat: repeat-x;
border-radius: 4px;
-webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 5px rgba(0, 0, 0, .075);
box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 5px rgba(0, 0, 0, .075);
}
.navbar-default .navbar-nav > .open > a,
.navbar-default .navbar-nav > .active > a {
background-image: -webkit-linear-gradient(top, #dbdbdb 0%, #e2e2e2 100%);
background-image: -o-linear-gradient(top, #dbdbdb 0%, #e2e2e2 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#dbdbdb), to(#e2e2e2));
background-image: linear-gradient(to bottom, #dbdbdb 0%, #e2e2e2 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffdbdbdb', endColorstr='#ffe2e2e2', GradientType=0);
background-repeat: repeat-x;
-webkit-box-shadow: inset 0 3px 9px rgba(0, 0, 0, .075);
box-shadow: inset 0 3px 9px rgba(0, 0, 0, .075);
}
.navbar-brand,
.navbar-nav > li > a {
text-shadow: 0 1px 0 rgba(255, 255, 255, .25);
}
.navbar-inverse {
background-image: -webkit-linear-gradient(top, #3c3c3c 0%, #222 100%);
background-image: -o-linear-gradient(top, #3c3c3c 0%, #222 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#3c3c3c), to(#222));
background-image: linear-gradient(to bottom, #3c3c3c 0%, #222 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff3c3c3c', endColorstr='#ff222222', GradientType=0);
filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
background-repeat: repeat-x;
border-radius: 4px;
}
.navbar-inverse .navbar-nav > .open > a,
.navbar-inverse .navbar-nav > .active > a {
background-image: -webkit-linear-gradient(top, #080808 0%, #0f0f0f 100%);
background-image: -o-linear-gradient(top, #080808 0%, #0f0f0f 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#080808), to(#0f0f0f));
background-image: linear-gradient(to bottom, #080808 0%, #0f0f0f 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff080808', endColorstr='#ff0f0f0f', GradientType=0);
background-repeat: repeat-x;
-webkit-box-shadow: inset 0 3px 9px rgba(0, 0, 0, .25);
box-shadow: inset 0 3px 9px rgba(0, 0, 0, .25);
}
.navbar-inverse .navbar-brand,
.navbar-inverse .navbar-nav > li > a {
text-shadow: 0 -1px 0 rgba(0, 0, 0, .25);
}
.navbar-static-top,
.navbar-fixed-top,
.navbar-fixed-bottom {
border-radius: 0;
}
@media (max-width: 767px) {
.navbar .navbar-nav .open .dropdown-menu > .active > a,
.navbar .navbar-nav .open .dropdown-menu > .active > a:hover,
.navbar .navbar-nav .open .dropdown-menu > .active > a:focus {
color: #fff;
background-image: -webkit-linear-gradient(top, #337ab7 0%, #2e6da4 100%);
background-image: -o-linear-gradient(top, #337ab7 0%, #2e6da4 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#337ab7), to(#2e6da4));
background-image: linear-gradient(to bottom, #337ab7 0%, #2e6da4 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff2e6da4', GradientType=0);
background-repeat: repeat-x;
}
}
.alert {
text-shadow: 0 1px 0 rgba(255, 255, 255, .2);
-webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .25), 0 1px 2px rgba(0, 0, 0, .05);
box-shadow: inset 0 1px 0 rgba(255, 255, 255, .25), 0 1px 2px rgba(0, 0, 0, .05);
}
.alert-success {
background-image: -webkit-linear-gradient(top, #dff0d8 0%, #c8e5bc 100%);
background-image: -o-linear-gradient(top, #dff0d8 0%, #c8e5bc 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#dff0d8), to(#c8e5bc));
background-image: linear-gradient(to bottom, #dff0d8 0%, #c8e5bc 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffdff0d8', endColorstr='#ffc8e5bc', GradientType=0);
background-repeat: repeat-x;
border-color: #b2dba1;
}
.alert-info {
background-image: -webkit-linear-gradient(top, #d9edf7 0%, #b9def0 100%);
background-image: -o-linear-gradient(top, #d9edf7 0%, #b9def0 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#d9edf7), to(#b9def0));
background-image: linear-gradient(to bottom, #d9edf7 0%, #b9def0 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9edf7', endColorstr='#ffb9def0', GradientType=0);
background-repeat: repeat-x;
border-color: #9acfea;
}
.alert-warning {
background-image: -webkit-linear-gradient(top, #fcf8e3 0%, #f8efc0 100%);
background-image: -o-linear-gradient(top, #fcf8e3 0%, #f8efc0 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#fcf8e3), to(#f8efc0));
background-image: linear-gradient(to bottom, #fcf8e3 0%, #f8efc0 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffcf8e3', endColorstr='#fff8efc0', GradientType=0);
background-repeat: repeat-x;
border-color: #f5e79e;
}
.alert-danger {
background-image: -webkit-linear-gradient(top, #f2dede 0%, #e7c3c3 100%);
background-image: -o-linear-gradient(top, #f2dede 0%, #e7c3c3 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#f2dede), to(#e7c3c3));
background-image: linear-gradient(to bottom, #f2dede 0%, #e7c3c3 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff2dede', endColorstr='#ffe7c3c3', GradientType=0);
background-repeat: repeat-x;
border-color: #dca7a7;
}
.progress {
background-image: -webkit-linear-gradient(top, #ebebeb 0%, #f5f5f5 100%);
background-image: -o-linear-gradient(top, #ebebeb 0%, #f5f5f5 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#ebebeb), to(#f5f5f5));
background-image: linear-gradient(to bottom, #ebebeb 0%, #f5f5f5 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffebebeb', endColorstr='#fff5f5f5', GradientType=0);
background-repeat: repeat-x;
}
.progress-bar {
background-image: -webkit-linear-gradient(top, #337ab7 0%, #286090 100%);
background-image: -o-linear-gradient(top, #337ab7 0%, #286090 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#337ab7), to(#286090));
background-image: linear-gradient(to bottom, #337ab7 0%, #286090 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff286090', GradientType=0);
background-repeat: repeat-x;
}
.progress-bar-success {
background-image: -webkit-linear-gradient(top, #5cb85c 0%, #449d44 100%);
background-image: -o-linear-gradient(top, #5cb85c 0%, #449d44 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#5cb85c), to(#449d44));
background-image: linear-gradient(to bottom, #5cb85c 0%, #449d44 100%);
filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5cb85c', endColorstr='#ff449d44', GradientType=0);
background-repeat: repeat-x;
}
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// This file is autogenerated via the `commonjs` Grunt task. You can require() this file in a CommonJS environment.
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/* -------------------------------------------------> */
/* EDITING STYLES ----------------------------------> */
/* -------------------------------------------------> */
input[type="text"],
select,
input[type="password"] {
border: 0;
font-size: 14px;
padding: .5em;
background: #fff;
border: 1px solid #e0dfdf;
border-radius: 5px;
-moz-border-radius: 5px;
-webkit-border-radius: 5px;
margin-bottom: .8em;
}
input.block {
margin-bottom: 20px;
}
label {
margin-top: .5em;
margin-bottom: .5em;
}
label.inline {
display: inline;
font-weight: normal;
font-size: .9em;
}
.verbose-toggle,
.verbose-toggle:visited,
#showAddFormButton,
#showAddFormButton:visited,
input.submit,
input.submit:visited,
/* the id selectors are used temporarily due to the custom jsp tags (<v:input>)
for editing forms which require an id and do not allow a class. This will be
removed once we refactor the editing forms to Freemarker */
input#submit,
input#submit:visited,
input.form-button,
input.form-button:visited {
background: #222 url(../images/alert-overlay.png) repeat-x;
display: inline-block;
padding: 5px 18px 7px;
color: #fff;
text-decoration: none;
border-radius: 4px;
-moz-border-radius: 4px;
-webkit-border-radius: 4px;
position: relative;
border: 0;
margin: 0;
/* background-color: #749a02; */
background-color: #3446A0;
color: #fff;
font-size: 14px;
font-weight: normal;
line-height: 1;
margin-right: .6em;
margin-top: .5em;
margin-bottom: .5em;
}
#verbose-mode .small {
font-size: 12px;
color: #fff;
}
#verbose-mode b {
color: #595B5B;
}
#verbose-mode .verbose-off{
background: #706a66;
}
input.delete,
input.delete:visited,
input#delete,
input#delete:visited {
background: #222 url(../images/alert-overlay.png) repeat-x;
display: inline-block;
padding: 5px 18px 7px;
color: #fff;
text-decoration: none;
border-radius: 4px;
-moz-border-radius: 4px;
-webkit-border-radius: 4px;
position: relative;
cursor: pointer;
border: 0;
margin: 0;
/* background-color: #398aac; */
background-color: #0c0cb5;
color: #fff;
font-size: 14px;
font-weight: normal;
line-height: 1;
margin-right: .6em;
}
.verbose-toggle:hover,
#showAddFormButton:hover,
input.submit:hover,
input#submit:hover,
input.form-button:hover {
color: #fff;
background-color: #3E8BAA;
}
input.delete:hover,
input#delete:hover {
color: #fff;
background-color: #93c3d4;
}
.verbose-toggle,
.verbose-toggle:active,
#showAddFormButton:active,
input.delete:active,
input#delete:active,
input.submit:active,
input#submit:active,
input.form-button:active,
.button:active,
input.add-account:active,
section.accounts input.delete:active {
top: 1px;
}
form textarea {
border: 1px solid #e0dfdf;
border-radius: 4px;
-moz-border-radius: 4px;
-webkit-border-radius: 4px;
}
.maxWidth {
margin-top: 20px;
width: 100%;
}
#itemList a.remove:link,
#itemList a.remove:visited,
#showAddForm a.cancel:link,
form a:link.cancel,
form a:visited.cancel,
a.return:link,
a.return:visited {
text-decoration: underline;
color: #f70;
border-color: none;
padding-left: 3px;
}
#itemList a.remove:hover,
#itemList a.remove:active,
#showAddForm a.cancel:hover,
#showAddForm a.cancel:active,
form a:hover.cancel,
form a:active.cancel {
text-decoration: none;
color: #f70;
background: none;
}
.validationError {
font-weight: normal;
color: #cc0000;
margin-bottom: .3em;
}
p.submit {
margin-top: 0;
padding-top: 0;
}
.editingForm table {
border-color: #dfe6e6;
}
.editingForm td {
padding: 3px;
}
.editingForm .entryFormHead {
background-color: #f1f2ee;
border-color: #dfe6e6;
}
.form-item {
margin-top:.3em;
background-color: #fff;
border-color: #e0dfdf;
font-size: .8em;
border-width: 1px;
color: #595B5B;
padding: .3em;
}
a.return:hover,
a.return:active {
text-decoration: none;
color: #f70;
background: none;
}
.database_header {
background-color: #f1f2ee;
color: #2485ae;
font-size: 1em;
}
.database_upperleftcorner {
color: #5F6464;
font-size: 1em;
}
.database_upperleftcenter {
background-color: #B0C4DE;
color: #5F6464;
font-size: 1em;
}
.rownumheader,
.rownum {
background-color: #F1F2EE;
color: #5F6464;
font-size: 1em;
}
.headercenter {
color: #5F6464;
font-size: 10pt;
font-style: normal;
text-align: center;
}
.postheader {
background-color: #E6E6FA;
color: #777;
font-size: 1em;
}
.database_postheader {
background-color: #f7f9f9;
font-size: 1em;
}
.postheadercenter,
.postheaderright {
font-size: 1em;
}
.verticalfieldlabel {
color: #5E6363; /*#5F6464;*/
font-style: normal !important;
font-size: 10pt !important;
line-height: 2em !important;
}
td.row, .rowvert {
background-color: #f7f9f9;
color: #5F6464;
}
.row, .rowvert {
font-size: 10pt;
font-style: normal;
text-align: left;
line-height: 2em;
}
td.rowalternate {
background-color: #fff;
color: #5F6464;
}
.rowalternate {
font-size: 1em;
line-height: 2em;
}
.rowbold {
background-color: #FFFAFA;
color: #5F6464;
font-size: 10pt; /*1em;*/
line-height: 2em;
}
.form-background {
background-color: #fff;
}
.formsEdit p {
/*padding-top: 1em;*/
margin-bottom: 1em;
padding-bottom: 0;
margin-top: 0;
}
.formsEdit p.validationError {
margin-bottom: 1.8em;
margin-top: 0;
padding-top: 0;
font-size: .8em;
}
form.deleteForm {
margin-top: 2em;
padding-top: 1em;
border-top: 1px dotted #e3e9e9;
}
form.editForm span {
color: #c00;
font-weight: normal;
font-size: small;
}
form h3.delete-entry {
padding-right: .8em;
display: inline;
}
form h2 {
margin-bottom: 0;
padding-bottom: 10px;
}
form select {
border: 0;
font-size: 14px;
padding: .5em;
background: #fff;
border: 1px solid #e0dfdf;
border-radius: 5px;
-moz-border-radius: 5px;
-webkit-border-radius: 5px;
margin-bottom: .8em;
margin-top: .7em;
margin-right: .5em;
}
.notice {
margin-top: 1em;
border: 1px dotted #FFD324;
}
a.ingestMenu:link,
a.ingestMenu:visited,
a.account-menu:link,
a.account-menu:visited {
text-decoration: none;
color: #2485AE;
}
a.ingestMenu:hover,
a.ingestMenu:active,
a.account-menu:hover,
a.account-menu:active,
ul#alpha-browse-individuals a,
ul#browse-classes a,
ul#find-filters a,
ul#vgraph-classes a {
text-decoration: none;
color: #5E6363;
}
ul.ingestMenu {
margin-bottom: 1.5em;
}
.toBeDeleted {
margin-bottom: 0;
}
/* BACK-END FORMS --------------> */
.display-inline {
display: inline-block;
}
.theme-dir,
#noContentMsg {
clear: both;
}
tr.editformcell td input[type="text"] {
width: 30% !important;
}
tr.editformcell td input.fullWidthInput {
width: 70% !important;
margin-top: 0.7em !important;
}
tr.editformcell td input.shortInput {
width: 20% !important;
margin-top: 0.7em !important;
}
tr.editformcell td textarea.matchingInput {
width: 95%;
height:10ex;
margin-top:0.7em;
font-family: "Lucida Sans Unicode","Lucida Grande", Geneva, helvetica, sans-serif;
font-size:0.95em;
}
hr.formDivider {
background-color: #3196C4;
border: 0 none;
height: 1px;
margin-bottom: 20px;
margin-top: 15px;
opacity: 0.3;
}
.editingForm table {
width: 100%;
border: none;
}

29
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/* -------------------------------------------------> */
/* SITE ADMIN DASHBOARD ----------------------------> */
/* -------------------------------------------------> */
#adminDashboard .pageBodyGroup {
padding: 0 1em .5em 1em;
}
#adminDashboard .pageBodyGroup h3 {
background-color: #fff;
border-bottom: 1px dotted #AFB2B2;
font-weight: bold;
padding: .625em;
color: #064D68;
margin-bottom: .625em;
}
#adminDashboard .pageBodyGroup ul {
margin: 0 0 1em .6em;
}
#adminDashboard .pageBodyGroup h4 {
color: #5E6363;
font-size: 1em;
margin-left: .6em;
font-weight: bold;
}
#adminDashboard .pageBodyGroup h4 a {
color: #5E6363;
font-size: 1em;
margin-left: 0;
font-weight: bold;
}

79
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/* BROWSE CLASSES ------> */
ul#browse-classes {
border: 1px solid #dde4e3;
border-right: 0;
background-color: #f1f2ee;
}
ul#browse-classes li,
ul#vgraph-classes li {
border-bottom: 1px solid #dde4e3;
font-size: 1em;
}
ul#browse-classes a:hover,
ul#browse-classes a.selected {
background: url(../images/arrow.gif) 4px 5px no-repeat;
color: #2ea0cf;
}
ul#browse-classes .count-classes {
font-size: 12px;
}
/* ALPHA BROWSE------> */
nav#alpha-browse-container {
width: 739px;
}
ul#alpha-browse-individuals {
background-color: #fff;
}
ul#alpha-browse-individuals a:hover,
ul#alpha-browse-individuals a.selected {
background: url(../images/arrowSmall.gif) -3px 7px no-repeat;
color: #2ea0cf;
}
ul#alpha-browse-individuals .count-classes,
ul#vgraph-classes .count-classes {
font-size: .75em;
}
.alphaIndex,
.pagination.menupage,
tr.editformcell td select,
ul#alpha-browse-individuals li {
font-size: .8em;
}
nav#alpha-browse-container {
border: 1px solid #dde4e3;
background-color: #fff;
border-left: 1px solid #dde4e3;
border-bottom: none;
}
/* BROWSE INDIVIDUALS------> */
#individuals-in-class {
width: 739px;
border: 1px solid #dde4e3;
background-color: #fff;
}
#individuals-in-class li.individual {
border-bottom: 1px solid #dde4e3;
}
#individuals-in-class li img {
border: 2px solid #dde4e3;
}
#individuals-in-class li h1,
#property-group-menu ul,
article.property ul.property-list {
color: #5e6363;
font-size: 1em;
}
.pagination.menupage li a:hover {
background: #5e6363;
}
.pagination>li {
display: inline-block;
padding-right: 2px;
}
.pagination>li>a {
float: none;
}
.pagination>li.selectedNavPage {
padding-right: 7px;
}

175
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.jumbotron {
background-color: transparent;
color: #ffffff;
text-align: center;
text-shadow: 1px 1px 4px #000;
}
.jumbotron p {
color: #dddddd;
}
.hero {
background: #283a4b;
}
.hero form input,
.hero form select {
margin-bottom: 0em;
margin-top: 0em;
margin-right: 0em;
margin-left: 0em;
}
.home-sections {
border-top: 1px dotted #dbe3e3; /* stroke */
border-bottom: 1px dotted #dbe3e3; /* stroke */
background-color: #fff; /* layer fill content */
}
.home-sections h4 {
border-top: 1px solid rgba(220,228,227,.42); /* stroke */
border-bottom: 1px solid rgba(220,228,227,.42); /* stroke */
/* background-color: #395d7f; /* layer fill content */
background-color: #338caf;
border-bottom: 2px solid #62b6d7;
color: #fff;
}
#home-stats {
margin-top: 30px;
}
#stats li {
-moz-border-radius: 6px;
-webkit-border-radius: 6px;
border-radius: 6px; /* border radius */
-moz-background-clip: padding;
-webkit-background-clip: padding-box;
background-clip: padding-box; /* prevents bg color from leaking outside the border */
background: #5e6363 url(../images/stats-bg.png) repeat-x 0 0;
color: #fff;
}
#stats li a:hover {
opacity: .5;
}
#stats .stats-count span {
color: #fff;
opacity: .5;
}
#stats p {
color: #fff;
}
#home-research {
width: 297px;
float: left;
clear: both;
}
#home-research ul {
padding: 0.7em 0 0.6em 0.75em;
}
#home-research li {
line-height: 1.25em;
margin-top: 0.7em;
font-size: 0.9em;
}
#home-research li:last-child {
text-align:right;
padding: 4px 16px 0 0;
}
#home-research li span {
color: #fff;
background: url(../../../images/count-background.png) no-repeat;
width: 65px;
height: 27px;
display: inline-block;
padding: 6px 8px 0 0;
margin-left: 4px;
text-align: center;
}
#home-academic-depts {
width: 297px;
margin-left: 15px;
float: left;
}
#home-academic-depts h4,
#home-faculty-mbrs h4,
#home-geo-focus h4,
#home-research h4 {
display: inline;
padding: 3px 10px;
}
#home-academic-depts ul {
list-style: disc outside url(../../../images/arrowIcon.gif);
padding: 0.4em 0 0.6em 1.8em;
}
#home-academic-depts li {
line-height: 1.25em;
padding-top: 1.0em;
padding-right: 4px;
font-size: 0.9em;
}
#home-faculty-mbrs {
width: 297px;
margin: 0 0 20px 15px;
float: left;
}
div#tempSpacing {
margin-top:30px;
padding-left:20px;
height:325px;
}
div#research-faculty-mbrs {
font-size: 0.9em;
line-height: 16px;
}
div#research-faculty-mbrs li.individual {
clear: both;
}
div#research-faculty-mbrs ul li.individual:first-child {
clear: both;
padding-top: 20px
}
div#research-faculty-mbrs li h1 {
padding: 6px 0 2px 0;
}
div#research-faculty-mbrs li img {
width: 60px;
float: left;
padding: 0px 8px 10px 10px;
}
div#research-faculty-mbrs li span.title {
display: block;
font-size: 0.825em;
line-height: 1.25em;
padding-bottom: 8px;
}
div#research-faculty-mbrs ul#viewMoreFac {
list-style:none;
}
div#research-faculty-mbrs ul#viewMoreFac li {
text-align:right;
padding: 0 16px 8px 0;
clear:both;
}
div#adjImgHeight {
height:65px;
overflow:hidden;
float:left;
margin-bottom:10px;
}
#home-geo-focus {
clear: both;
display: inline-block;
margin-top: 30px;
height: 632px;
width: 921px;
}
#home-geo-focus div#timeIndicatorGeo {
text-align:center;
margin-top:100px;
}
div.faculty-home {
padding-top: 20px;
}
.faculty-home,
.research-count {
background-color: #fff;
}

29
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/* -------------------------------------------------> */
/* IMAGE UPLOAD-------------------------------------> */
/* -------------------------------------------------> */
/* <------ UPLOAD PICTURE*/
#photoUploadDefaultImage img {
border: 4px solid #DDE4E3;
}
#photoUploadForm {
border-left: 1px dotted #DDE4E3;
}
/* <------ CROP PICTURE*/
#photoCropping img {
border: 1px solid #DDE4E3;
}
#photoCropping {
margin-left: 20px;
padding-left: 40px;
background: url(../images/pointToCropPreview.jpg) 0 30px no-repeat;
}
#photoCroppingPreview {
width: 210px;
}
.photoCroppedPreview {
border: 4px solid #DDE4E3;
}
/* <------ DELETE PICTURE*/
#photoDeletingContainer {
border: 1px solid #bdbcbc;
}

13
webapp/src/main/webapp/themes/tenderfoot/css/page-index.css Normal file
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/* <------ INDEX PAGE*/
.siteMap h2 {
padding-bottom: 0;
}
.class-group {
margin-right:25px;
}
#isotope-container {
overflow:visible !important;
}
#isotope-container li {
width:290px;
}

111
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article.property {
width: 100%;
}
article.property h3 {
background-image: -webkit-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);
background-image: -webkit-gradient(linear, left top, left bottom, from(#f5f5f5), to(#e8e8e8));
background-image: linear-gradient(to bottom, #f5f5f5 0%, #e8e8e8 100%);
background-repeat: repeat-x;
}
article.property li h3 {
background-image: none;
}
.collaboratorship-link-container {
margin: 12px 0 8px 0;
width: auto;
}
.collaboratorship-link-container a {
min-width: 185px;
}
.collaboratorship-link-container a.btn-info {
background-image: -o-linear-gradient(top, #fff 0%, #e0e0e0 100%);
background-image: linear-gradient(to bottom, #fff 0%, #e0e0e0 100%);
background-color: #e0e0e0;
border-color: #ccc;
color: #333;
}
.collaboratorship-link-container img {
height: 14px;
width: 14px;
}
.visualization-buttons {
text-align: center;
}
.pastPosition {
display: none;
}
#individual-hasResearchArea a {
font-size: 13px;
background: transparent;
border: 1px solid #337ab7;
color: #337ab7;
font-weight: 400;
transition: all 0.5s;
padding: .1em .4em .1em;
border-top-left-radius: 4px;
border-top-right-radius: 4px;
}
#individual-hasResearchArea a:hover {
background: #337ab7;
color: #fff;
text-decoration: none;
}
#individual-intro h1 {
font-size: 1.375em;
color: #2485ae;
float: left;
}
#individual-intro #iconControlsRightSide {
float: right;
background-color: #fff;
margin-right: 10px;
padding-top: 3px;
padding-left: 3px;
padding-right: 3px;
padding-bottom: 1px;
line-height: 1em;
}
#individual-intro span.display-title {
padding-left: 0px;
margin-left: 10px;
}
#individual-intro h1.foaf-person span.display-title {
font-size: .825em;
border-left: 1px solid #a6b1b0;
padding-left: 10px;
}
#individual-intro h2 {
clear: both;
margin-left: 10px;
}
ul#individual-hasResearchArea li,
ul#individual-facultyMemberships li {
float: left;
padding-right: 10px;
margin-right: 10px;
border-right: none;
}
#admin {
background-color: #f3f3f0;
margin-top: 15px;
}
#admin h3 {
background-color: #398AAC;
color: #fff;
}

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/* LOG IN------> */
#login {
float: right;
width: 314px;
border: 1px solid #e8ece9;
margin-right: 25px;
padding-bottom: 30px;
margin-bottom: 30px;
overflow: hidden;
margin-top: 20px;
}
body.login #login {
float: none;
}
#login h2 {
font-size: 22px;
color: #2485ae;
padding-left: 15px;
padding-top: 18px;
border-bottom: none;
}
h3.internal-auth:hover {
color: #47B6D0;
}
#error-alert {
margin-left: 0;
margin-bottom: 12px;
padding: 12px;
padding-bottom: 12px;
border: 1px dotted #a12424;
}
#error-alert img {
float: left;
margin: 0;
padding: 0;
vertical-align: middle;
}
#error-alert p {
padding-left: 40px;
font-size: .8em;
line-height: 1.3em;
color: #a12424;
padding-top: 5px;
}
#login-form label {
display: block;
color: #5e6363;
padding-top: 0;
padding-left: 38px;
font-size: 14px;
}
#login-form input.text-field {
border: 0;
font-size: 14px;
padding: 5px;
width: 219px;
height: 24px;
margin-left: 38px;
background: #fff;
border: 1px solid #e0dfdf;
border-radius: 5px;
-moz-border-radius: 5px;
-webkit-border-radius: 5px;
}
#login-form input.text-field:focus {
border: 1px solid rgba(57, 138, 172, .5);
background-color: rgba(57, 138, 172, .1);
}
#login-form p.submit {
width: 100px;
height: 40px;
margin-top: 20px;
margin-left: 38px;
}
#login-form p.submit-password {
height: 40px;
margin-top: 20px;
margin-left: 38px;
}
#login-form input.checkbox-remember-me {
float: left;
height: 14px;
width: 14px;
color: #5e6363;
padding: 0;
margin-top: 33px;
margin-left: 20px;
}
#login-form label.label-remember-me {
display: block;
float: right;
color: #5e6363;
font-size: 12px;
width: 100px;
margin: 0;
padding: 0;
margin-top: 29px;
margin-right: 32px;
}
p.forgot-password {
clear: both;
margin-left: 38px;
font-size: 12px;
padding-top: 1.2em;
padding-bottom: 1.2em;
}
p.request-account {
width: 219px;
clear: both;
float: left;
margin-left: 38px;
margin-top: 10px;
padding-top: 20px;
border-top: 1px solid #e8ece9;
}
p.password-note {
font-size: 12px;
color: #949696;
padding-left: 38px;
}
#flash-message {
border: 1px dotted #E2C822;
background-color: #FFF9D7;
padding: .5em;
margin-top: 10px;
margin-bottom: 10px;
}
#welcome-message {
border: 1px dotted #E2C822;
background-color: #FFF9D7;
padding: .5em;
margin-top: 10px;
margin-bottom: 10px;
}
p.external-auth {
margin: 0 auto;
}
p.external-auth a.blue,
p.external-auth a.blue:visited {
background-color: #398AAC;
width: 180px;
margin-bottom: 17px;
line-height: 1.3em;
padding-top: 10px;
}
p.external-auth a.blue:hover {
background-color: #58A2C1;
color: #fff;
}

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#menupage-intro {
width: 920px;
background: #fff;
}
#menupage-intro h2 {
font-size: 1.375em;
color: #064d68;
font-weight: normal;
}
#menupage-intro.people h2 {
float: left;
}
#menupage-content.people {
border-right: 1px solid #e8ece9;
}
#menupage-content {
width: 900px;
}
#menupage-content h3 {
font-size: 1.5em;
color: #002b44;
font-weight: normal;
border-bottom: 1px solid #f3f3f4;
}

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/* $This file is distributed under the terms of the license in /doc/license.txt$ */
/* CSS Document
CSS reste by Eric Meyer:
The goal of a reset stylesheet is to reduce browser inconsistencies in things like default line heights, margins and font sizes of headings, and so on... http://meyerweb.com/eric/tools/css/reset/
*/
html,
body,
div,
span,
object,
iframe,
h1,
h2,
h3,
h4,
h5,
h6,
p,
blockquote,
pre,
a,
abbr,
acronym,
address,
code,
del,
dfn,
em,
img,
q,
dl,
dt,
dd,
ol,
ul,
li,
fieldset,
form,
label,
legend,
table,
caption,
tbody,
tfoot,
thead,
tr,
th,
td {
margin: 0;
padding: 0;
border: 0;
font-weight: inherit;
font-style: inherit;
font-size: 100%;
font-family: "Noto Sans", "Lucida Sans Unicode","Lucida Grande", Geneva, helvetica, sans-serif;
vertical-align: baseline;
color: #595b5b;
font-weight: normal;
}
body {
line-height: 1.5em;
}
ol,
ul {
list-style: none;
font-weight: normal;
}
blockquote,
q {
quotes: none;
}
blockquote:before,
blockquote:after,
q:before,
q:after {
content: '';
content: none;
}
/* remember to highlight inserts somehow! */
ins {
text-decoration: none;
}
del {
text-decoration: line-through;
}
/* tables still need 'cellspacing="0"' in the markup */
table {
border-collapse: collapse;
border-spacing: 0;
}
/* New ones added to the default list */
a {
text-decoration: none;
}
fieldset {
border-style: none;
}
legend {
display: none;
}
.row {
font-size: 100%;
}
.navbar {
margin-bottom: 0px;
border: 0px solid transparent;
}
.navbar-collapse {
padding-left: 0px;
padding-right: 0px;
}

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/* $This file is distributed under the terms of the license in /doc/license.txt$ */
/****************************************
****************************************
__ __ __ __ __ ___
/\ \/\ \\/\ \/\ \/\ \ / __`\
\ \ \_/ |\ \ \ \ \_/ |/\ \L\ \
\ \___/ \ \_\ \___/ \ \____/
\/__/ \/_/\/__/ \/___/
VIVO tenderfoot theme: screen styles
*****************************************
*****************************************/
@charset "UTF-8";
@import url("../bootstrap/css/bootstrap.min.css");
@import url("../bootstrap/css/bootstrap-theme.min.css");
@import url("reset.css");
@import url("tenderfoot.css");
@import url("edit.css");
@import url("page-admin.css");
@import url("page-browse.css");
@import url("page-home.css");
@import url("page-imageupload.css");
@import url("page-index.css");
@import url("page-individual.css");
@import url("page-login.css");
@import url("page-menu.css");
@import url("https://fonts.googleapis.com/css?family=Noto+Sans");

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legend {
display: none;
}
#nav {
background: #f7f9f9;
}
#nav.affix {
position: fixed;
top: 0;
width: 100%;
z-index:10;
}
#nav .container {
padding-left: 0px;
padding-right: 0px;
}
p.navbar-text {
margin-left: 15px;
}
body {
padding: 0;
height: 100%; /* needed for container min-height */
font-family: "Noto Sans", "Lucida Sans Unicode","Lucida Grande", Geneva, helvetica, sans-serif;
height: auto !important; /* real browsers */
height: 100%; /* IE6: treaded as min-height*/;
min-height: 100%; /* real browsers */
margin: 0 auto;
background: #f3f3f0 url(../images/header-background.png) center 0 no-repeat;
}
#wrapper-content {
background: none repeat scroll 0 0 #fff;
padding-top: 20px;
padding-bottom: 20px;
}
#property-tabs {
/*
padding-left: 0px;
padding-right: 0px;
*/
}
.row {
background: #ffffff;
}
.row.title {
background: #398AAC;
padding-top: 7px;
padding-bottom: 3px;
}
.row.title span {
color: #ffffff;
}
.row.title h1 {
margin-left: 10px;
}
.row-eq-height {
display: -webkit-box;
display: -webkit-flex;
display: -ms-flexbox;
display: flex;
}
.photo-wrapper {
padding: 0 !important;
margin: 0 !important;
background: #f3f3f0;
vertical-align: top;
}
.photo-wrapper img {
// height: 100%;
width: 100%;
padding: 0 !important;
margin: 0 !important;
object-fit: contain;
}
.person-details {
background: #f3f3f0;
padding-bottom: 5px;
}
/* HEADER ------> */
#branding {
position: relative;
// width: 970px;
height: 114px;
margin: 0 auto;
}
#branding .row {
background-color:rgba(255, 255, 255, 0);
}
/* HEADER NAV------> */
ul#header-nav {
float: right;
list-style: none;
height: 30px;
padding-top: 10px;
margin-right: 13px;
}
ul#header-nav li {
float: left;
display: block;
padding-left: 10px;
padding-right: 10px;
border-right: 1px solid #7c7d7f;
font-size: .7em;
color: #fff;
}
ul#header-nav li:last-child {
padding-left: 1px;
padding-right: 0;
border-right: none;
}
ul#header-nav a {
color: #fff;
}
ul#header-nav a:hover,
ul#header-nav a:active {
text-decoration: none;
color: #999;
}
ul#header-nav a.log-out {
padding-left: 10px;
}
/* SEARCH ------> */
#search {
width: 396px;
height: 38px;
right: 10px;
padding-top: 5px;
}
#search-field {
width: 396px;
height: 38px;
background: url(../images/search-interior-pages.png) 0 0 no-repeat;
}
#search-field input.search {
text-decoration: none;
background-color: transparent;
color: #fff;
font-size: 14px;
border: none;
padding-left: 25px;
padding-top: 8px;
cursor: pointer;
}
input.search-vivo {
float: left;
width: 290px;
height: 25px;
border: 0;
font-size: 16px;
color: #5e6363;
margin-left: 10px;
margin-top: 5px;
padding: 0;
}
#search-form-modifier {
display: none;
}
/* FOOTER------> */
footer {
height: 88px;
margin: 0 auto;
font-size: .7em;
color: white;
background-color: black;
}
footer .row {
background-color: black;
}
footer p.copyright {
float: left;
padding-top: 55px;
color: white;
}
footer p.copyright small {
font-size: 1em;
}
ul#footer-nav {
float: right;
list-style: none;
height: 20px;
margin: 0;
padding: 0;
padding-top: 55px;
}
ul#footer-nav li {
float: left;
display: block;
padding-left: 10px;
padding-right: 10px;
border-right: 1px solid #c9c8c8;
}
ul#footer-nav li:last-child,
ul#header-nav li.last,
ul#individual-hasResearchArea li:last-child,
ul#individual-facultyMemberships li:last-child {
border-right: none;
}
#footer-nav a {
color: white;
}
#footer-nav a:hover,
a.terms,
a.powered-by-vivo {
color: white;
text-decoration: none;
}
#footer-nav a.terms:hover,
a.powered-by-vivo:hover {
color: white;
text-decoration: none;
}
#footer-nav p {
margin-bottom: 1.3em;
}
/* BRANDING ------> */
h1.vivo-logo {
position: absolute;
width: 442px;
height: 59px;
top: 30px;
left: 0;
background: url(../images/VIVO-logo.png) 0 0 no-repeat;
}
h1.vivo-logo a {
display: block;
width: 386px;
height: 59px;
}
.displace {
left: -9999px;
position: absolute;
}
h2 {
padding: 5px 0 6px 0;
margin: 0;
font-size: 1.375em;
color: #064d68;
line-height: 1.5em;
}
h2 a {
color: #2485ae;
}
h2 a:link,
h2 a:visited {
text-decoration: underline;
}
h3 {
padding: 5px 0 6px 0;
margin: 0;
font-size: 1.125em;
color: #064d68;
}
h4 {
padding: 5px 0 6px 0;
margin: 0;
font-size: 1em;
color: #064d68;
}
h5 {
padding: 5px 0 6px 0;
margin: 0;
font-size: .875em;
color: #064d68;
}
label {
display: block;
}
#developerPanel h1 {
line-height: 1.5em;
}
#developerPanel .container {
width: auto;
}
table.classHierarchy {
min-width: auto;
max-width: none;
display: block;
margin-right: 0px;
}
section#container div {
width: auto;
}

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#
# Text strings for the controllers and templates
#
# Default (English)
#
# wilma theme templates (themes/wilma/templates)
#
menu_termuse = Terms of Use
menu_powered = Powered by
menu_about = About
menu_contactus = Contact Us
menu_support = Support
menu_version = Version
menu_copyright = copyright
menu_item = menu item
menu_welcomestart = Welcome
menu_logout = Log out
menu_login = Log in
menu_loginfull = Log in to manage this site
identity_title = VIVO | connect share discover
identity_index = Index
identity_edit = Edit Page
identity_admin = Site Admin
identity_myprofile = My profile
identity_myaccount = My account
identity_user = user
indiv_foafperson_for = for
indiv_foafperson_return = return to
uri_icon = uri icon
intro_title = Welcome to VIVO
intro_para1 = VIVO is a research-focused discovery tool that enables collaboration among scientists across all disciplines.
intro_para2 = Browse or search information on people, departments, courses, grants, and publications.
intro_searchvivo = Search VIVO
intro_filtersearch = Filter search
#
# "partial" individual templates ( /templates/freemarker/body/partials/individual )
#
contact_capitalized = Contact
phone = phone
primary_email = primary email
additional_emails = additional emails
email = email
primary_email_capitalized = Primary Email
additional_emails_capitalized = Additional Emails
contact_info = Contact Info
active_grants_for = Active Grants for the
department = department
grant_name = Grant Name
close_date = Close Date
no_active_grants = There are currently no active grants for this department.
view_all_active_grants = View all active grants
faculty_who_are_members_of_org = Here are the faculty in the {0} department who are members of this organization.
view_all_faculty = view all faculty
view_all_members_of_org = View all the members of this organization.
faculty_memberships = Faculty Memberships
individuals_with_researh_area_one = Here are the individuals in <a href="{1}">{0}</a> who have an interest in this research area.
individuals_with_researh_area_two = Here are the individuals in the <a href="{1}">{0}</a> who have an interest in this research area.
individuals_with_dept = Here are the individuals with an interest in <a href="{1}">{0}</a> who are in this organization.
faculty_with_researh_area = Here are the faculty members in the {0} department who have an interest in this research area.
view_all_individuals_in_area = View all individuals with an interest in this area.
view_all_individuals_in_dept = View all individuals in this organization.
view_all_faculty_in_area = View all faculty with an interest in this area.
faculty_research_areas = Faculty Research Areas
affiliated_research_areas = Affiliated Research Areas
affiliated_departments = Associated Departments
research_area = individuals in the department with this research area
organization = individuals with the research area in this organization
display_more = more
share_the_uri = share the uri
export_qr_codes = Export QR codes
vcard_qr = vCard QR
vcard_qr_code = vCard QR Code
close_capitalized = Close
qr_icon = qr icon
qr_code = QR Code
invalid_qr_code_parameter = You have passed an invalid value for the qrCode display parameter.
research_areas = research areas
publications_in_vivo = Publications in VIVO
grants_in_vivo = grants in VIVO
co_author = co-author
co_authors = co-authors
co_author_network = Co-author Network
map_of_science = map of science
map_of_science_capitalized = Map of Science
co_investigator_network = co-investigator network
co_investigator_network_capitalized = Co-investigator Network
networks = Networks
co_authors_capitalized = Co-authors
temporal_graph = temporal graph
temporal_graph_capitalized = Temporal Graph
websites = Websites
advisee_label = advisee label
advisor_label = advisor label
candidate = candidate
candidacy = candidacy
advisingRel_label = advisory label
editor_abbreviated = Ed.
volume_abbreviated = Ed.
resource_name = resource name
missing_info_resource = missing information resource
award_receipt_name = award receipt name
award_name = award name
conferred_by = conferred by
conferred_on = conferred on
selected_award = Selected Award
incomplete_date_time_interval = incomplete date/time interval
incomplete_date_time_value = incomplete date/time value
in = in
organization_name = organization name
missing_organization = missing organization
middle_organization = middle organization
concept_name = concept name
at = at
event_name = event name
missing_event = missing event
event_label = event label
activity_name = activity name
missing_activity = missing activity
awarded_by = awarded by
administered_by = administered by
presentation_name = presentation name
missing_presentation = missing presentation
conference = conference
series = series
author_name = author name
missing_author = missing author
address_street_one = address street one
address_street_two = address street two
address_street_three = address street three
address_label = address label
person_name = person name
missing_person_in_posn = missing person in this position
missing_person_in_role = missing person in this role
scopus_id_link = Scopus ID Link
loading_website_image = Loading website image
click_to_view_web_page = Click to view the {0} web page
screenshot_of_webpage = screenshot of webpage {0}
click_webpage_icon = click webpage icon
link_text = link text
link_name = link name
no_url_provided = no url provided for link
#
# individual templates ( /templates/freemarker/body/individual )
#
standard_view = Standard profile view
quick_view = Quick profile view
quick_view_icon = quick view icon
geographic_focus = Geographic Focus
background_top_image = background top image
full_view_icon = full view icon
profile_type = Profile Type
#
# body templates ( /templates/freemarker/body/ )
#
export_qr_code = Export QR code
more_qr_info = More info on QR codes
what_is_this = What is this?
view_this_profile = View this person's profile
vcard = Vcard
hyperlink = Hyperlink
#
# accounts templates ( /templates/freemarker/body/accounts )
#
password = password
#
# harvester templates ( /templates/freemarker/body/harvester )
#
must_be_admin = You must be an administrator to use this tool.
error_no_job_specified = Error: No file harvest job was specified, or an unknown job was specified.
probably_a_bug_so_report = The end user should not see this error under normal circumstances, so this is probably a bug and should be reported.
return_to_ingest_menu = Return to the Data Ingest Tools menu
ingest_menu = Ingest Menu
data_being_harvested = Please wait while your data is harvested.
harvest_complete = Harvest complete. For another, please refresh the page.
error_harvest_cannot_continue = An error has occurred and the file harvest cannot continue.
harvest_error_instructions_one = This is most likely due to an improper Harvester configuration. Please ensure the following:
harvest_error_instructions_two = VIVO Harvester is installed.
the_capitalized = The
harvester_location = harvester.location
harvest_error_instructions_three = property in runtime.properties is pointed to the Harvester installation directory.
harvest_error_instructions_fourA = In VIVO Harvester, the web server user (typically tomcat6) has read and write access to the
harvest_error_instructions_fourB = vivo/
harvest_error_instructions_fourC = directory and all of its children.
harvest_error_instructions_fiveA = In VIVO Harvester, the
harvest_error_instructions_fiveB = logs/
harvest_error_instructions_fiveC = directory exists and the web server user has read and write access to it.
harvest_error_instructions_sixA = In VIVO Harvester, the file
harvest_error_instructions_sixB = vivo/config/vivo.xml
harvest_error_instructions_sixC = is properly configured with your database information and namespace.
step_one = Step 1
download_template = Download template
download = Download
step_two = Step 2
fill_in_data = Fill in data
help_capitalized = Help
fill_in_template_with_data = Fill in the template with your data. You may fill in multiple templates if you wish to harvest multiple files at once.
step_three = Step 3
upload_files = Upload file(s)
upload_completed_templates = Upload your completed template(s).
upload_capitalized = Upload
uploaded_files = Uploaded files
step_four = Step 4
harvest_capitalized = Harvest
click_to_harvest = Click the button to harvest your file(s).
step_five = Step 5
view_results = View results
script_executed = Script being executed
progress_capitalized = Progress
undefined_runtime_property = property in runtime.properties is undefined.
define_value_for_property = In order to use this feature, please define a value for this property that points to the Harvester installation directory before redeploying and restarting the application.
#
# menupage templates ( /templates/freemarker/body/menupage )
#
grants_text_one = This body is from the the template file \
vivo/productMods/templates/freemarker/body/menupage/grants.ftl. \
In the display model, the grants page has a display:requiresBodyTemplate \
property that defines that the grants page overrides the default template. \
The default template for these pages is at /vitro/webapp/web/templates/freemarker/body/menupage/menupage.ftl
grants_two = This technique could be used to define pages without menu items, that get \
their content from a freemarker template. An example would be the about page.
grants_text_three = This would create a page that would use about.ftl as the body. The page would be \
accessed via /about and would override all servlet mappings in web.xml.
#
# lib templates ( /templates/freemarker/body/lib )
#
faculty_capitalized = Faculty
loading_faculty = Loading faculty . . .
research_capitalized = Research
view_all = View all ...
view_all_research = view all research
no_research_content_found = No research content found.
departments = Departments
loading_map_information = Loading map information . . .
verify_match_capitalized = Verify this match
change_selection = change selection
#
# custom form templates ( /templates/freemarker/edit/forms )
#
manage_concepts = Manage Concepts
no_concepts_specified = There are currently no concepts specified.
return_to_profile = Return to Profile Page
external_vocabulary_services = External Vocabulary Services
create_own_concept = Select or create a VIVO-defined concept.
add_selected_concept = Add Selected Concept
cannot_find_concept = Can't find the concept you want? Select or create a VIVO-defined concept.
add_concept = Add Concept
attendee_capitalized = Attendee
event_type = event type
attended = attended
manage_authors = Manage Authors
no_linked_author = no linked author
remove_author_link = remove author link
add_author = Add Author
return_to_grant = Return to grant
return_to_publication = Return to publication
add_an_author = Add an Author
person_capitalized = Person
organization_capitalized = Organization
middle_name = Middle name
initial_okay = initial okay
selected_author = Selected Author
organization_name_capitalized = Organization name
selected_organization = Selected Organization
clinical_activity = clinical activity
clinical_activity_type = clinical activity type
year_hint_format = YYYY
collection_series_editor_role = collection or series editor role
editor_role_in = editor role in
edit_wbpage_of = Edit webpage of
add_webpage_for = Add webpage for
add_webpage = Add Web Page
url_type = URL Type
faculty_of_1000 = Faculty of 1000 Link
standard_web_link = Standard Web Link
webpage_name = Webpage Name
investigator_entry_for = investigator entry for
investigator_capitalized = Investigator
principal_investigator_entry_for = principal investigator entry for
co_principal_investigator_entry_for = co-principal investigator entry for
create_capitalized = Create
create_entry = Create Entry
unable_to_handle_position_editing = This form is unable to handle the editing of this position because it is associated with multiple Position individuals.
start_year_must_precede_end = The Start Year must be earlier than the End Year.
end_year_must_be_later = The End Year must be later than the Start Year.
enter_or_select_grant = Please enter or select a value in the Grant Name field.
selected_grant = Selected Grant
years_of_grant_participation = Years of Participation in Grant
leadership = leadership
organization_type = organization type
leadership_role = Leadership Role
membership = membership
membership_in = membership in
organizations = organizations
organizer_of = organizer of
organizer_role = Organizer Role
outreach_comm_service = outreach & community service
outreach_comm_service_in = outreach & community service in
select_or_enter_name = Please select an existing value or enter a new value in the Name field.
enter_new_role_value = Please enter a new value in the Role field.
presentation_entry_for = presentation entry for
presentation_capitalized = Presentation
presentation_type = Presentation Type
role_in = Role in
presentation_hint = e.g., Moderator, Speaker, Panelist
presented_at = Presented At
selected_conference = Selected Conference
years_participation_in = Years of Participation in
grant_entry_for = grant entry for
select_existing_pub_or_enter_new = Please select an existing publication in the Title field or enter a new one.
unable_to_handle_grant_editing = This form is unable to handle the editing of this grant because it is associated with multiple grant individuals.
grant_type = grant Type
publication_entry_for = publication entry for
publication_type = Publication Type
selected_publication = Selected Publication
published_in = Published in
selected_journal = Selected Journal
selected_event = Selected Event
proceedings_of = Proceedings of
editor_capitalized = Editor
required_with_last_name = required with new Last name
selected_editor = Selected Editor
publisher_capitalized = Publisher
selected_publisher = Selected Publisher
place_of_grant = Place of grant
volume_capitalized = Volume
number_capitalized = Number
issue_capitalized = Issue
chapter_capitalized = Chapter
start_page = Start Page
end_page = End Page
grant_date = grant Date
selected_book = Selected Book
publication_date = Publication Date
place_of_publication = Place of Publication
research_activity = research activity
research_activity_type = research activity type
reviewer_of = reviewer of
reviewer_role = Reviewer Role
entry_for = entry for
specify_role_for_activity = Please specify a role for this activity.
start_year = Start Year
service_to_profession = service to the profession
service_to_profession_in = service to the profession in
service_provider_role = Service Provider Role
teaching_activity = teaching activity
teaching_activity_type = teaching activity type
teaching_role_hint = e.g., Instructor, Facilitator, Assistant
create_own_concept_all_caps = Create Your Own Concept
concept_capitalized = Concept
selected_concept = Selected Concept
create_concept = Create Concept
return_to_manage_concepts = Return to Manage Concepts
institutional_internal_class = Institutional Internal Class
internal_class_intro_one = This class will be used to designate those individuals internal to your institution.
internal_class_intro_two = This will allow you to limit the individuals displayed on your menu pages (People, Research, etc.) to only those within your institution.
no_local_oncologies = There are currently no recognized local ontologies.
namespace_must_use_this_pattern = In order for a local ontology to be recognized here, its namespace URI must follow this pattern
new_local_oncology = a new local ontology
return_here_to_define_class = and then return here to define the institutional internal class.
select_existing_local_class = Select an existing class from a local extension
cannot_find_class = Can't find an appropriate class?
create_new_class = Create a new class
create_new_one = Create a new one
use_capitals_each_word = use capitals for the first letter of each word
local_namespace = Local Namespace
problematic_section_error = Error: problematic section as above should all have been handled.
new_local_ontology = new local ontology
manage_grants_and_projects = Manage Grants & Projects for
check_grants_to_exclude = Check those grants and projects you want to <em>exclude</em> from the profile page.
manage_affiliated_people = Manage People Affiliated with
check_people_to_exclude = Check those people you want to <em>exclude</em> from the profile page.
manage_publications_for = Manage Publications for
check_pubs_to_exclude = Check those publications you want to <em>exclude</em> from the profile page.
manage_web_pages = Manage Web Pages
has_no_webpages = This individual currently has no web pages specified. Add a new web page by clicking on the button below.
edit_webpage_link = edit web page link
delete_webpage_link = delete web page link
webpage_url = webpage url
add_new_web_page = Add New Web Page
enable_internal_class_one = To enable this option, you must first select an
enable_internal_class_two = for your instance
internal_class = institutional internal class
only_display = Only display
within_my_institution = within my institution
enter_a_name = Please enter a value in the Name field.
enter_last_name = Please enter a Last name for this person.
enter_first_name = Please enter a First name for this person.
posn_history_entry_for = position history entry for
enter_posn_title_value = Please enter a value in the Position Title field.
enter_posn_type_value = Please select a value in the Position Type field.
enter_or_select_person_value = Please select an existing value or enter a new value in the Person field.
position_title = Position Title
position_type = Position Type
selected_person = Selected Person
degree_candidacy = Degree Candidacy
subject_area = Subject Area
selected_subject_area = Selected Subject Area
selected_advisee = Selected Advisee
selected_advisor = Selected Advisor
advisee_capitalized = Advisee
advisor_capitalized = Advisor
advising_relationship_type = Advising Relationship Type
select_advising_relationship_type = Please select an Advising Relationship Type.
advisor_relationship_entry_for = advisor relationship entry for
advisee_relationship_entry_for = advisee relationship entry for
years_participating = Years of Participation
award_or_honor_for = award or honor for
select_Award_or_enter_name = Please select an existing value or enter a new value in the Award or Honor Name field.
award_honor_name = Award or Honor Name
select_award = Selected Award
conferred_by_capitalized = Conferred by
selected_conferred = Selected Conferrer
description = Description
year_awarded = Year Awarded
years_inclusive = Years Inclusive
award_hint = (e.g., for multi-year awards)
educational_training_for = educational training entry for
select_organization_type = Please select a value in the Organization Type field.
select_an_organization_name = Please enter or select a value in the Name field.
select_educational_training_value = Please select a value in the Type of Educational Training field.
org_type_capitalized = Organization Type
educational_training_type = Type of Educational Training
dept_or_school_name = Department or School Name within the
degree = Degree
missing_degree = missing degree
major_field = Major Field of Degree
supplemental_information = Supplemental Information
supplemental_information_hint = (e.g., Thesis title, Transfer info, etc.)
academic_studies_or_other = Academic Studies or Other Training
edit_mailing_address = Edit Mailing Address
create_mailing_address = Create Mailing Address
mailing_address_for = mailing address for
enter_a_country = Please enter a value in the Country field.
enter_street_address = Please enter a value in the Street Address field.
enter_a_locality = Please enter a value in the City/Locality field.
enter_postal_code = Please enter a value in the Postal Code field.
country = Country
street_address = Street Address
city_locality = City/Locality
region = State/Province/Region
postal_code = Postal Code
posn_entry_for = position entry for
#
# coauthorship templates ( /templates/freemarker/visualization/coauthorship )
#
within_last_10_years = within the last 10 years
total = total
from = from
to = to
file = file
file_capitalized = File
view_full_timeline_and_network = View full timeline and co-author network.
download_data_as = Download data as
unique_coauthors_per_year = Unique Co-Authors per year
count_capitalized = Count
#
# copi templates ( /templates/freemarker/visualization/copi )
#
year_capitalized = Year
unique_coinvestigators = Unique co-investigators
co_investigator = co-investigator
co_investigators = co-investigators
unique_coinvestigators_per_year = Unique Co-Investigators per year
view_timeline_copi_network = View full timeline and co-investigator network.
#
# entity comparison templates ( /templates/freemarker/visualization/entitycomparison )
#
parent_organization_of = Parent organization of
temporal_graph_drill_up = temporal graph drill up
how_to_compare = How do you want to compare?
no_view_link = no view link
persistent_link_to_visualization = Persistent link to current visualization
error_notification = error notification
close_me = Close Me
what_to_compare = What do you want to compare?
organizations_capitalized = Organizations
people_capitalized = People
organization_hierarchy_note = Note: the organizations or people listed below are only those which are directly beneath {0} in the organization hierarchy. You may 'drill down' to see the organizations or people below a given sub-organization by selecting the chart icon next to a selected sub-organization's name below the graph on the right.
save_all_as_csv = Save All as CSV
clear_capitalized = Clear
clear_all_selected_entities = Clear all selected entities.
comparing_capitalized = Comparing
of = of
institutions_capitalized = Institutions
info_based_on_vivo_data = This information is based solely on {0} which have been loaded into the VIVO system.
you_have_selected = You have selected
of_a_maximum = of a maximum
schools = schools
legend_capitalized = Legend
with_unknown_year = with unknown year
with_known_year = with known year
from_current_incomplete_year = from current incomplete year
view = view
entity_comp_error_text1 = This organization has neither sub-organizations nor people with
entity_comp_error_text2 = in the system.
entity_comp_error_text3 = Please visit the full
entity_comp_error_text4 = for a more complete overview.
profile_page = profile page
publication = publication
published = published
publications = publications
by_publications = by Publications
publications_capitalized = Publications
grant = grant
granted = granted
grants = grants
by_grants = by Grants
grants_capitalized = Grants
activity = activity
activities = activities
#
# grant visualization templates ( /templates/freemarker/visualization/grant )
#
view_all_grants = view all grants
view_all_grants_text = View all VIVO grants and corresponding co-investigator network.
grant_per_year = Grants per year
link = link
#
# map of science templates ( /templates/freemarker/visualization/mapOfScience )
#
parent_entity = parent entity
map_of_science_icon = map of science icon
explore_activity = Explore activity
explore_capitalized = Explore
across_subdisciplines = across 554 scientific subdisciplines
compare_organizations = Compare organizations
mapped = mapped
save_unmapped_publications = Save Unmapped Publications
map_of_science_visualization = Map of Science Visualization
no_publications_for_this_organization = No publications in the system have been attributed to this organization.
please_visit = Please visit the
for_complete_overview = for a complete overview.
#
# model constructor templates ( /templates/freemarker/visualization/modelconstructor )
#
cached_models_regenerated = The following cached models will be regenerated.
uri_independent_model = URI Independent Model
currently_no_constructed_models = Currently there are no constructed models for use by visualization.
#
# person level templates ( /templates/freemarker/visualization/personlevel)
#
loading_data = loading data
co_investigator_icon = co-investigator icon
co_authorship = co-authorship
currently_no_papers_for = Currently there are no {0} papers for
this_author = this author
in_the_vivo_db = in the VIVO database.
no_papers_for = Currently there are no papers for
profile_capitalized = Profile
vivo_profile = VIVO profile
publication_s_capitalized = Publication(s)
co_author_s_capitalized = Co-author(s)
first_publication = First publication
last_publication = Last publication
incomplete_data_note1 = Note: This information is based solely on publications that have been loaded into the VIVO system. This may only be a small sample of the person's total work.
incomplete_data_note2 = Go to your profile page to enter additional details about your publications.
incomplete_data_note3 = Log in to enter additional details about your publications on your profile page.
tables_capitalized = Tables
publications_per_year = Publications per year
investigator_name = investigator name
co_author_icon = co-author icon
currently_no_grants_for = Currently there are no {0} grants for
this_investigator = this investigator
no_grants_for = Currently there are no grants for
grant_s_capitalized = Grant(s)
co_investigator_s_capitalized = Co-investigator(s)
first_grant = First Grant
last_grant = Last Grant
incomplete_grant_data_note1 = Note: This information is based solely on grants that have been loaded into the VIVO system. This may only be a small sample of the person's total work.
incomplete_grant_data_note2 = Go to your profile page to enter additional details about your grants.
incomplete_grant_data_note3 = Log in to enter additional details about your grants on your profile page.
grants_per_year = Grants per year
grant_info_for_all_years = The information in the following tables is for all years.
grant_sparkline_note = The spark lines shown above reflect grants through the last complete calendar year. These tables, however, show the grant information for all years, based on the information loaded in the VIVO system.
#
# publication templates ( /templates/freemarker/visualization/publication)
#
numbers_based_on_publications_in_vivo = These numbers are based solely on publications that have been loaded into this VIVO application. If this is your profile, you can enter additional publications below.
last_ten_full_years = in the last 10 full years
last_ten_full = in the last 10 full
download_link = download link
years = years
#
# miscellaneous visualization templates ( /templates/freemarker/visualization)
#
visualization_tools = Visualization Tools
refresh_cached_vis_models = Refresh Cached Models for Visualization
why_needed = Why is it needed?
vis_tools_note_one = Large-scale visualizations like the Temporal Graph or the Map of Science involve calculating total counts of publications or of grants for some entity. Since this also means checking through all of its sub-entities, the underlying queries can be both memory-intensive and time-consuming. For a faster user experience, we wish to save the results of these queries for later re-use.
vis_caching_process = What's involved in the caching process?
vis_tools_note_two = To this end we have devised a caching solution which will retain information about the hierarchy of organizations -- namely, which publications are attributed to which organizations -- by storing the RDF model.
vis_tools_note_three = We're currently caching these models in memory. The cache is built (only once) on the first user request after a server restart. Because of this, the same model will be served until the next restart. This means that the data in these models may become stale depending upon when it was last created. This works well enough for now. In future releases we will improve this solution so that models are stored on disk and periodically updated.
vis_tools_note_four = The models are refreshed each time the server restarts. Since this is not generally practical on production instances, administrators can instead use the "refresh cache" link above to do this without a restart.
#
# custom form javascript variables ( /templates/freemarker/edit/js)
#
drag_drop_reorder_authors = Drag and drop to reorder authors
reordering_authors_failed = Reordering of authors failed.
confirm_author_removal = Are you sure you want to remove this author:
error_processing_author_request = Error processing request: author not removed
author_capitalized = Author
or_add_new_one = or add a new one.
vocabulary_service_unavailable = An error was encountered in executing this search.
no_serch_results_found = No search results were found.
label_type = Label (Type)
label_altLabels = Label (Alternate Labels)
definition_capitalized = Definition
best_match = Best Match
select_term_from_results = Please select at least one term from the search search results.
select_vocabulary_source_to_search = Please select at least one external vocabulary source to search.
confirm_term_deletion = Are you sure you want to remove this term?
error_term_not_deleted = Error processing request: term not removed
advising = advising
advising_relationship = advising relationship
select_or_create_organization = Select an existing Organization or create a new one.
province_or_region = Province or Region
grant_successfully_excluded = The item has been successfully excluded from the profile page.
error_excluding_grant = Error processing request: the item cannot be excluded from the profile page.
person_successfully_excluded = The person has been successfully excluded from the organization page.
error_excluding_person = Error processing request: the person cannot be excluded from the organization page.
publication_successfully_excluded = The publication will has been successfully excluded from the profile page.
error_excluding_publication = Error processing request: the publication cannot be excluded from the profile page.
drag_drop_to_reorder_webpages = Drag and drop to reorder web pages
webpage_reordering_failed = Reordering of web pages failed.
confirm_webpage_deletion = Are you sure you want to remove this web page?
error_removing_webpage = Error processing request: web page not removed.
#
# miscellaneous javascript variables ( productMods/js)
#
researcher = researcher
researchers = researchers
currently_no_researchers = There are currently no researchers with a defined geographic focus.
countries_and_regions = countries and regions.
countries = countries
regions = regions
map_states_string = states.
map_state_string = state.
statewide_locations = state-wide locations.
researchers_in = researchers in
no_faculty_found = No faculty members found.
placeholder_image = placeholder image
view_all_departments = view all academic departments
no_departments_found = No academic departments found.
#
# individual javascript variables ( productMods/js/individual)
#
error_processing_type_change = Error processing request: the unchecked labels could not be deleted.
#
# visualization javascript variables ( productMods/js/visualization)
#
publications_with = Publications with
co_investigators_capitalized = Co-investigators
grants_with = Grants with
vis_first_link = First
vis_last_link = Last
vis_previous_link = Prev
vis_next_link = Next
max_entity_note = A Maximum 10 entities can be compared. Please remove some & try again.
organizations_and_people = Organizations and People
loading_data_for = Loading data for
data_for = Data for
refreshing_data_message = is now being refreshed. The visualization will load as soon as we are done computing, or you can search or browse other data in VIVO and come back in a few minutes.
disclaimer_text_one = This information is based solely on
disclaimer_text_two = which have been loaded into the VIVO system as of
level_undefined_error = ENTITY LEVEL UNDEFINED ERROR
total_number_of = Total Number of
number_of = Number of
have_an_unknown = have an unknown
year_not_chartered = year (not charted above)
in_completed_year = in a completed year
were = were
in_current_incomplete_year = in the current incomplete year (not charted above)
publication_count = Publication Count
grant_count = Grant Count
entity_type = Entity Type
entity_label = Entity Label
no_matching_entities_found = No matching entities found
clear_search_query = clear search query
short_max_entity_note = A Maximum of 10 entities can be compared.
information_capitalized = Information
content_requires_flash = This content requires the Adobe Flash Player.
get_flash = Get Flash
of_pubs = of pubs.
max_nbr_for_comp = The maximum number of items for comparison is 3.
no_matching_science_areas = No matching science areas found
subdisciplines = Subdisciplines
disciplines = Disciplines
science_area_level = Level of Science Area
of_activity = of activity
drill_down = drill down
disciplines_lower = disciplines
subdisciplines_lower = subdisciplines
show_discipline_labels = Show discipline labels
no_attributed_publications = No publications in the system have been attributed to this
none_of_the = None of the
publications_attributed_to = publications attributed to this
been_science_located = have been "science-located."
publication_attributed_to = The publication attributed to this
not_science_located = has not been "science-located."
no_journal_information = have no journal information.
no_matching_map_location = could not be matched with a map location using their journal information.
map_being_refreshed_msg = is now being refreshed. The visualization will load as soon as we are done computing, or you can search or browse other data in VIVO and come back in a few minutes.
publication_pubs = publications (pubs.)
percent_activity = % activity
#
# miscellaneous additions
#
limit_search = limit search
standardview_tooltip_one = Click to display the
standardview_tooltip_two = profile quick view.
research_area_tooltip_one = Click an area to view others
research_area_tooltip_two = with the same interest.
quickview_tooltip = Click to view the standard profile page.
global_research = Global Research
country_wide_research = Country-wide Research
local_research = Local Research
selected_presentation = Selected Presentation
event_capitalized = Event
collection_capitalized = Collection
item_capitalized = Item
telephone_number_for = telephone number for
telephone_number = Telephone Number
enter_telephone_number = Please enter a value in the Telephone Number field.
email_address = Email Address
email_address_for = email address for
enter_email_address = Please enter a value in the Email Address field.
full_name = Full name
full_name_for = full name for
first_name = First name
last_name = Last name
title_not_found = Title not found.
speeches_capitalized = Speeches
theses_capitalized = Theses
select_document_type = Please select a value in the Document Type field.
select_a_document_name = Please enter or select a value in the Document Name field.
document_type_capitalized = Document Type
document_name_capitalized = Document Name
selected_document = Selected Document
editor_name = editor name
missing_editor = missing editor
drag_drop_reorder_editors = Drag and drop to reorder editors
reordering_editors_failed = Reordering of editors failed.
confirm_editor_removal = Are you sure you want to remove this editor:
error_processing_editor_request = Error processing request: editor not removed
manage_editors = Manage Editors
no_linked_editor = no linked editor
remove_editor_link = remove editor link
add_an_editor = Add an Editor
add_editor = Add Editor
please_select_type = Please select a type from the drop-down list.
preferred_title = Preferred Title
preferred_title_for = preferred title for
enter_preferred_title = Please enter a value in the Preferred Title field.
fax_number_for = fax number for
fax_number = Fax Number
enter_fax_number = Please enter a value in the Fax Number field.
credentials = credentials
select_credential_or_enter_name = Please enter or select a value in the Credential Name field.
type_of_credential = Type of Credential
credential_name = Credential Name
selected_credential = Selected Credential
year_issued = Year Issued
year_awarded_for = year awarded for
create_year_awarded = Create year awarded
edit_year_awarded = Edit year awarded
publication_date_for = publication date for
create_publication_date = Create publication date
edit_publication_date = Edit publication date
name_prefix = Name Prefix
name_suffix = Name Suffix
administering_organization_for = administering organization for
missing_credential = missing credential
grant_administered_by = grant being administered by
missing_grant = missing grant
editor_of_entry = editor of entry for
role_type = Role type
add_capitalized = Add
researcher_role = Researcher Role
search_service_btn = Search Service
through_today = Publications through today's date
doi_link=Digital Object Identifier (DOI)
using_cache_time=Using information cached at

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$(document).ready(function(){
$("#viewAllTab").on("click",function(){
$('[data-toggle="tab"]').parent().removeClass("active");
$("#viewAllTab").parent().addClass("active");
$("#viewAllTab").addClass("active");
$(".tab-pane").addClass("fade active in");
});
});

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<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<#--
Individual profile page template for foaf:Person individuals. This is the default template for foaf persons
in the Wilma theme and should reside in the themes/wilma/templates directory.
-->
<#include "individual-setup.ftl">
<#import "lib-vivo-properties.ftl" as vp>
<#--Number of labels present-->
<#if !labelCount??>
<#assign labelCount = 0 >
</#if>
<#--Number of available locales-->
<#if !localesCount??>
<#assign localesCount = 1>
</#if>
<#--Number of distinct languages represented, with no language tag counting as a language, across labels-->
<#if !languageCount??>
<#assign languageCount = 1>
</#if>
<#assign visRequestingTemplate = "foaf-person-tenderfoot">
<#--add the VIVO-ORCID interface -->
<#include "individual-orcidInterface.ftl">
<section id="individual-admin">
<div class="row">
<div class="col-md-12">
<#include "individual-adminPanel.ftl">
</div>
</div>
</section>
<section id="individual-intro" class="vcard person" role="region"><span itemscope itemtype="http://schema.org/Person">
<div class="row row-eq-height">
<div class="col-md-2 photo-wrapper">
<!-- Image -->
<#assign individualImage>
<@p.image individual=individual
propertyGroups=propertyGroups
namespaces=namespaces
editable=editable
showPlaceholder="always" />
</#assign>
<#if ( individualImage?contains('<img class="individual-photo"') )>
<#assign infoClass = 'class="withThumb"'/>
</#if>
<!-- div id="photo-wrapper">${individualImage}</div -->
${individualImage}
</div>
<div class="col-md-10 person-details">
<div class="row title">
<div class="col-md-12">
<h1 class="vcard foaf-person">
<#-- Label -->
<span itemprop="name" class="fn"><@p.label individual editable labelCount localesCount/></span>
<#-- Display preferredTitle if it exists; otherwise mostSpecificTypes -->
<#assign title = propertyGroups.pullProperty("http://purl.obolibrary.org/obo/ARG_2000028","http://www.w3.org/2006/vcard/ns#Title")!>
<#if title?has_content> <#-- true when the property is in the list, even if not populated (when editing) -->
<#if (title.statements?size < 1) >
<@p.addLinkWithLabel title editable />
<#elseif editable>
<h2>${title.name?capitalize!}</h2>
<@p.verboseDisplay title />
</#if>
<#list title.statements as statement>
<span itemprop="jobTitle" class="display-title<#if editable>-editable</#if>">${statement.preferredTitle}</span>
<@p.editingLinks "${title.localName}" "${title.name}" statement editable title.rangeUri />
</#list>
</#if>
<#-- If preferredTitle is unpopulated, display mostSpecificTypes -->
<#if ! (title.statements)?has_content>
<@p.mostSpecificTypes individual />
</#if>
</h1>
<span id="iconControlsRightSide">
<img id="uriIcon" title="${individual.uri}" src="${urls.images}/individual/uriIcon.gif" alt="${i18n().uri_icon}"/>
<#if checkNamesResult?has_content >
<img id="qrIcon" src="${urls.images}/individual/qr_icon.png" alt="${i18n().qr_icon}" />
<span id="qrCodeImage" class="hidden">${qrCodeLinkedImage!}
<a class="qrCloseLink" href="#" title="${i18n().qr_code}">${i18n().close_capitalized}</a>
</span>
</#if>
</span>
</div>
</div>
<div class="row person-details">
<div class="col-md-12">
<!-- Positions -->
<#include "individual-positions.ftl">
<!-- Research Areas -->
<#include "individual-researchAreas.ftl">
</div>
</div>
</div>
</div>
</span></section>
<section itemscope itemtype="http://schema.org/Person" id="individual-intro" class="vcard person" role="region">
<section id="individual-info" ${infoClass!} role="region">
<!-- Overview -->
<!-- #include "individual-overview.ftl" -->
<!-- Geographic Focus -->
<!-- #include "individual-geographicFocus.ftl" -->
</section>
</section>
<#assign nameForOtherGroup = "${i18n().other}">
<#-- Ontology properties -->
<#if !editable>
<#-- We don't want to see the first name and last name unless we might edit them. -->
<#assign skipThis = propertyGroups.pullProperty("http://xmlns.com/foaf/0.1/firstName")!>
<#assign skipThis = propertyGroups.pullProperty("http://xmlns.com/foaf/0.1/lastName")!>
</#if>
<div class="row">
<div id="property-tabs" class="col-md-8">
<#include "individual-property-group-tabs.ftl">
</div>
<div class="col-md-4">
<#include "individual-visualizationFoafPerson.ftl">
<!-- Contact Info -->
<#include "individual-contactInfo.ftl">
<!-- Websites -->
<#include "individual-webpage.ftl">
</div>
</div>
<#assign rdfUrl = individual.rdfUrl>
<#if rdfUrl??>
<script>
var individualRdfUrl = '${rdfUrl}';
</script>
</#if>
<script>
var imagesPath = '${urls.images}';
var individualUri = '${individual.uri!}';
var individualPhoto = '${individual.thumbNail!}';
var exportQrCodeUrl = '${urls.base}/qrcode?uri=${individual.uri!}';
var baseUrl = '${urls.base}';
var i18nStrings = {
displayLess: '${i18n().display_less}',
displayMoreEllipsis: '${i18n().display_more_ellipsis}',
showMoreContent: '${i18n().show_more_content}',
verboseTurnOff: '${i18n().verbose_turn_off}',
researchAreaTooltipOne: '${i18n().research_area_tooltip_one}',
researchAreaTooltipTwo: '${i18n().research_area_tooltip_two}'
};
var i18nStringsUriRdf = {
shareProfileUri: '${i18n().share_profile_uri}',
viewRDFProfile: '${i18n().view_profile_in_rdf}',
closeString: '${i18n().close}'
};
</script>
${stylesheets.add('<link rel="stylesheet" href="${urls.base}/css/individual/individual.css" />',
'<link rel="stylesheet" href="${urls.base}/css/individual/individual-vivo.css" />',
'<link rel="stylesheet" href="${urls.base}/js/jquery-ui/css/smoothness/jquery-ui-1.12.1.css" />',
'<link rel="stylesheet" type="text/css" href="${urls.base}/css/jquery_plugins/qtip/jquery.qtip.min.css" />')}
${headScripts.add('<script type="text/javascript" src="${urls.base}/js/tiny_mce/tiny_mce.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/jquery_plugins/qtip/jquery.qtip.min.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/jquery_plugins/jquery.truncator.js"></script>')}
${scripts.add('<script type="text/javascript" src="${urls.base}/js/individual/individualUtils.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/individual/individualQtipBubble.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/individual/individualUriRdf.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/jquery-ui/js/jquery-ui-1.12.1.min.js"></script>',
'<script type="text/javascript" src="${urls.base}/js/imageUpload/imageUploadUtils.js"></script>')}

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<section id="share-contact" role="region">
<!-- Image -->
<#assign individualImage>
<@p.image individual=individual
propertyGroups=propertyGroups
namespaces=namespaces
editable=editable
showPlaceholder="always" />
</#assign>
<#if ( individualImage?contains('<img class="individual-photo"') )>
<#assign infoClass = 'class="withThumb"'/>
</#if>
<div id="photo-wrapper">${individualImage}</div>
<!-- Contact Info -->
<div id="individual-tools-people">
<span id="iconControlsLeftSide">
<img id="uriIcon" title="${individual.uri}" src="${urls.images}/individual/uriIcon.gif" alt="${i18n().uri_icon}"/>
<#if checkNamesResult?has_content >
<img id="qrIcon" src="${urls.images}/individual/qr_icon.png" alt="${i18n().qr_icon}" />
<span id="qrCodeImage" class="hidden">${qrCodeLinkedImage!}
<a class="qrCloseLink" href="#" title="${i18n().qr_code}">${i18n().close_capitalized}</a>
</span>
</#if>
</span>
</div>
<#include "individual-contactInfo.ftl">
<!-- Websites -->
<#include "individual-webpage.ftl">
</section>

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<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<#-- List of positions for the individual -->
<#assign positions = propertyGroups.pullProperty("${core}relatedBy", "${core}Position")!>
<#if positions?has_content> <#-- true when the property is in the list, even if not populated (when editing) -->
<#assign localName = positions.localName>
<h2 id="${localName}" class="mainPropGroup" title="${positions.publicDescription!}">${positions.name?capitalize} <@p.addLink positions editable /> <@p.verboseDisplay positions /></h2>
<ul id="individual-personInPosition" role="list">
<@positionsList positions editable />
</ul>
</#if>
<#macro positionsList property editable statements=property.statements template=property.template>
<#list statements as statement>
<#if property.rangeUri?? >
<#local rangeUri = property.rangeUri />
<#else>
<#local rangeUri = "" />
</#if>
<#if statement.dateTimeEnd??>
<li role="listitem" class="pastPosition">
<#include "${template}">
<@p.editingLinks "${property.localName}" "${property.name}" statement editable rangeUri/>
</li>
<#else>
<li role="listitem" class="currentPosition">
<#include "${template}">
<@p.editingLinks "${property.localName}" "${property.name}" statement editable rangeUri/>
</li>
</#if>
</#list>
</#macro>

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<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<#-- Template for property listing on individual profile page -->
<#import "lib-properties.ftl" as p>
<#assign subjectUri = individual.controlPanelUrl()?split("=") >
<#assign tabCount = 1 >
<#assign sectionCount = 1 >
<div class="row">
<div class="col-md-12">
<ul class="nav nav-tabs">
<#list propertyGroups.all as groupTabs>
<#if ( groupTabs.properties?size > 0 ) >
<#assign groupName = groupTabs.getName(nameForOtherGroup)>
<#if groupName?has_content>
<#--the function replaces spaces in the name with underscores, also called for the property group menu-->
<#assign groupNameHtmlId = p.createPropertyGroupHtmlId(groupName) >
<#else>
<#assign groupName = "${i18n().properties_capitalized}">
<#assign groupNameHtmlId = "${i18n().properties}" >
</#if>
<#if tabCount = 1 >
<li data-toggle="tab" class="active" href="#${groupNameHtmlId?replace("/","-")}"><a href="#">${groupName?capitalize}</a></li>
<#assign tabCount = 2>
<#else>
<li data-toggle="tab" href="#${groupNameHtmlId?replace("/","-")}"><a href="#">${groupName?capitalize}</a></li>
</#if>
</#if>
</#list>
<#if (propertyGroups.all?size > 1) >
<li id="viewAllTab" data-toggle="tab" href="#viewAll"><a href="#">${i18n().view_all_capitalized}</a></li>
</#if>
</ul>
</div>
</div>
<div class="row">
<div class="col-md-12 tab-content">
<#list propertyGroups.all as group>
<#if (group.properties?size > 0)>
<#assign groupName = group.getName(nameForOtherGroup)>
<#assign groupNameHtmlId = p.createPropertyGroupHtmlId(groupName) >
<#assign verbose = (verbosePropertySwitch.currentValue)!false>
<div id="${groupNameHtmlId?replace("/","-")}"
class="tab-pane <#if (sectionCount == 1) >active</#if>"
role="tabpanel">
<#-- Display the group heading -->
<#if groupName?has_content>
<#--the function replaces spaces in the name with underscores, also called for the property group menu-->
<#assign groupNameHtmlId = p.createPropertyGroupHtmlId(groupName) >
<h2 id="${groupNameHtmlId?replace("/","-")}" pgroup="tabs" class="hidden">${groupName?capitalize}</h2>
<#else>
<h2 id="properties" pgroup="tabs" class="hidden">${i18n().properties_capitalized}</h2>
</#if>
<#-- List the properties in the group -->
<#include "individual-properties.ftl">
</div>
<#assign sectionCount = 2 >
</#if>
</#list>
</div>
</div>
<script>
var individualLocalName = "${individual.localName}";
</script>
${stylesheets.add('<link rel="stylesheet" href="${urls.base}/css/individual/individual-property-groups.css" />')}
${headScripts.add('<script type="text/javascript" src="${urls.base}/js/amplify/amplify.store.min.js"></script>')}
${scripts.add('<script type="text/javascript" src="${urls.base}/js/individual/propertyGroupControls.js"></script>')}
${scripts.add('<script src="${urls.theme}/js/propertyGroupControls-bootstrap.js"></script>')}

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<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<#-- Template for sparkline visualization on individual profile page -->
<#-- Determine whether this person is an author -->
<#assign isAuthor = p.hasVisualizationStatements(propertyGroups, "${core}relatedBy", "${core}Authorship") />
<#-- Determine whether this person is involved in any grants -->
<#assign obo_RO53 = "http://purl.obolibrary.org/obo/RO_0000053">
<#assign isInvestigator = ( p.hasVisualizationStatements(propertyGroups, "${obo_RO53}", "${core}InvestigatorRole") ||
p.hasVisualizationStatements(propertyGroups, "${obo_RO53}", "${core}PrincipalInvestigatorRole") ||
p.hasVisualizationStatements(propertyGroups, "${obo_RO53}", "${core}CoPrincipalInvestigatorRole") ) >
<#if (isAuthor || isInvestigator)>
${stylesheets.add('<link rel="stylesheet" href="${urls.base}/css/visualization/visualization.css" />')}
<#assign standardVisualizationURLRoot ="/visualization">
<#if isAuthor>
${scripts.add('<script type="text/javascript" src="${urls.base}/js/d3.min.js"></script>')}
<#assign coAuthorIcon = "${urls.images}/visualization/coauthorship/co_author_icon.png">
<#assign mapOfScienceIcon = "${urls.images}/visualization/mapofscience/scimap_icon.png">
<#assign coAuthorVisUrl = individual.coAuthorVisUrl()>
<#assign mapOfScienceVisUrl = individual.mapOfScienceUrl()>
<span id="publicationsHeading">${i18n().publications_in_vivo}</span>
<svg width="360" height="200" id="publicationsChart" onload="renderPublicationsChart()">
</svg>
<script>
var dataUrl = '${urls.base}/visualizationAjax?vis=cumulative_pub_count&uri=${individual.uri?url}';
function renderPublicationsChart() {
var svg = d3.select("#publicationsChart"),
margin = {top: 30, right: 20, bottom: 30, left: 40},
width = +svg.attr("width") - margin.left - margin.right,
height = +svg.attr("height") - margin.top - margin.bottom,
g = svg.append("g").attr("transform", "translate(" + margin.left + "," + margin.top + ")");
var x = d3.scaleBand()
.rangeRound([0, width])
.paddingInner(0.05)
.align(0.1);
var y = d3.scaleLinear()
.rangeRound([height, 0]);
var z = d3.scaleOrdinal()
.range(["#777777", "#1f77b4", "#aec7e8", "#ff7f0e"]);
d3.csv(dataUrl, function (d, i, columns) {
for (i = 1, t = 0; i < columns.length; ++i) t += d[columns[i]] = +d[columns[i]];
d.total = t;
return d;
}, function (error, data) {
if (error) throw error;
var keys = data.columns.slice(1);
x.domain(data.map(function (d) {
return d.Year;
}));
y.domain([0, d3.max(data, function (d) {
return d.total;
})]).nice();
z.domain(keys);
g.append("g")
.selectAll("g")
.data(d3.stack().keys(keys)(data))
.enter().append("g")
.attr("fill", function (d) {
return z(d.key);
})
.selectAll("rect")
.data(function (d) {
return d;
})
.enter().append("rect")
.attr("x", function (d) {
return x(d.data.Year);
})
.attr("y", function (d) {
return y(d[1]);
})
.attr("height", function (d) {
return y(d[0]) - y(d[1]);
})
.attr("width", x.bandwidth());
g.append("g")
.attr("class", "axis")
.attr("transform", "translate(0," + height + ")")
.call(d3.axisBottom(x));
g.append("g")
.attr("class", "axis")
.call(d3.axisLeft(y).ticks(null, "s"))
.append("text")
.attr("x", 2)
.attr("y", y(y.ticks().pop()) + 0.5)
.attr("dy", "0.32em")
.attr("fill", "#000");
var legend = g.append("g")
.attr("font-family", "sans-serif")
.attr("font-size", 10)
.attr("text-anchor", "end")
.selectAll("g")
.data(keys.slice(1,4).reverse())
.enter().append("g")
.attr("transform", function (d, i) {
return "translate(-" + (200 - i * 80) +",-25)";
});
legend.append("rect")
.attr("x", width - 19)
.attr("width", 19)
.attr("height", 19)
.attr("fill", z);
legend.append("text")
.attr("x", width - 24)
.attr("y", 9.5)
.attr("dy", "0.32em")
.text(function (d) {
return d;
});
});
}
</script>
<div class="visualization-buttons">
<div id="coauthorship_link_container" class="collaboratorship-link-container">
<a href="${coAuthorVisUrl}" title="${i18n().co_author_network}" class="btn btn-info" role="button">
<img src="${coAuthorIcon}" alt="${i18n().co_author}" width="25px" height="25px" />
${i18n().co_author_network}
</a>
</div>
<div id="mapofscience_link_container" class="collaboratorship-link-container">
<a href="${mapOfScienceVisUrl}" title="${i18n().map_of_science}" class="btn btn-info" role="button">
<img src="${mapOfScienceIcon}" alt="${i18n().map_of_science}" width="25px" height="25px" />
${i18n().map_of_science_capitalized}
</a>
</div>
<#if isInvestigator>
<#assign coInvestigatorVisUrl = individual.coInvestigatorVisUrl()>
<#assign coInvestigatorIcon = "${urls.images}/visualization/coauthorship/co_investigator_icon.png">
<div id="coinvestigator_link_container" class="collaboratorship-link-container">
<a href="${coInvestigatorVisUrl}" title="${i18n().co_investigator_network}" class="btn btn-info" role="button">
<img src="${coInvestigatorIcon}" alt="${i18n().co_investigator_network}" width="25px" height="25px" />
${i18n().co_investigator_network_capitalized}
</a>
</div>
</#if>
</div>
</#if>
</#if>

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<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<@widget name="login" include="assets" />
<#--
With release 1.6, the home page no longer uses the "browse by" class group/classes display.
If you prefer to use the "browse by" display, replace the import statement below with the
following include statement:
<#include "browse-classgroups.ftl">
Also ensure that the homePage.geoFocusMaps flag in the runtime.properties file is commented
out.
-->
<#import "lib-home-page.ftl" as lh>
<!DOCTYPE html>
<html lang="en">
<head>
<#include "head.ftl">
<#if geoFocusMapsEnabled >
<#include "geoFocusMapScripts.ftl">
</#if>
<script type="text/javascript" src="${urls.base}/js/homePageUtils.js?version=x"></script>
</head>
<body class="${bodyClasses!}" onload="${bodyOnload!}">
<#-- supplies the faculty count to the js function that generates a random row number for the search query -->
<@lh.facultyMemberCount vClassGroups! />
<header id="branding" role="banner">
<#include "identity.ftl">
</header>
<#include "developer.ftl">
<#include "menu.ftl">
<#include "message.ftl">
<div class="row hero">
<div class="theme-showcase">
<div class="col-md-12">
<div class="container" role="main">
<div class="jumbotron">
<h1>${i18n().intro_title}</h1>
</div>
<form id="search-homepage" action="${urls.search}" name="search-home" role="search" method="post" class="form-horizontal">
<fieldset>
<div class="form-group pull-left" style="margin-right: 5px;">
<select class="form-control" id="classgroup" name="classgroup">
<option value="">${i18n().all_capitalized}</option>
<#list vClassGroups as group>
<#if (group.individualCount > 0)>
<option value="${group.uri}">${group.displayName?capitalize}</option>
</#if>
</#list>
</select>
</div>
<div class="form-group">
<div class="input-group">
<input type="text" name="querytext" class="form-control" value="" placeholder="${i18n().search_form}" autocapitalize="off" />
<span class="input-group-btn">
<button class="btn btn-default" type="submit">
<span class="icon-search">${i18n().search_button}</span>
</button>
</span>
</div>
</div>
</fieldset>
</form>
</div>
</div>
<div class="col-md-12">
<div class="container">
<div class="jumbotron">
<p>${i18n().intro_para1}</p>
<p>${i18n().intro_para2}</p>
</div>
</div>
</div>
</div>
</div>
<div class="row faculty-home">
<div class="container">
<div class="col-md-4">
<!-- List of research classes: e.g., articles, books, collections, conference papers -->
<@lh.researchClasses />
</div>
<div class="col-md-4">
<!-- List of four randomly selected faculty members -->
<@lh.facultyMbrHtml />
</div>
<div class="col-md-4">
<!-- List of randomly selected academic departments -->
<@lh.academicDeptsHtml />
</div>
</div>
</div>
<#if geoFocusMapsEnabled >
<div class="row geo-focus">
<div class="container">
<div class="col-md-12">
<!-- Map display of researchers' areas of geographic focus. Must be enabled in runtime.properties -->
<@lh.geographicFocusHtml />
</div>
</div>
</div>
</#if>
<!-- List of research classes: e.g., articles, books, collections, conference papers -->
<div class="row research-count">
<div class="container">
<!-- div class="col-md-6">
</div -->
<div class="col-md-12">
<!-- Statistical information relating to property groups and their classes; displayed horizontally, not vertically-->
<@lh.allClassGroups vClassGroups! />
</div>
</div>
</div>
<#include "footer.ftl">
<#-- builds a json object that is used by js to render the academic departments section -->
<@lh.listAcademicDepartments />
<script>
var i18nStrings = {
researcherString: '${i18n().researcher}',
researchersString: '${i18n().researchers}',
currentlyNoResearchers: '${i18n().currently_no_researchers}',
countriesAndRegions: '${i18n().countries_and_regions}',
countriesString: '${i18n().countries}',
regionsString: '${i18n().regions}',
statesString: '${i18n().map_states_string}',
stateString: '${i18n().map_state_string}',
statewideLocations: '${i18n().statewide_locations}',
researchersInString: '${i18n().researchers_in}',
inString: '${i18n().in}',
noFacultyFound: '${i18n().no_faculty_found}',
placeholderImage: '${i18n().placeholder_image}',
viewAllFaculty: '${i18n().view_all_faculty}',
viewAllString: '${i18n().view_all}',
viewAllDepartments: '${i18n().view_all_departments}',
noDepartmentsFound: '${i18n().no_departments_found}'
};
// set the 'limmit search' text and alignment
if ( $('input.search-homepage').css('text-align') == "right" ) {
$('input.search-homepage').attr("value","${i18n().limit_search} \u2192");
}
</script>
</body>
</html>

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<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<#import "lib-list.ftl" as l>
<!DOCTYPE html>
<html lang="en">
<head>
<#include "head.ftl">
</head>
<body class="${bodyClasses!}" onload="${bodyOnload!}">
<header id="branding" role="banner" -->
<#include "identity.ftl">
</header>
<#include "developer.ftl">
<#include "menu.ftl">
<#include "message.ftl">
<div id="wrapper-content" role="main" class="container">
<!--[if lte IE 8]>
<noscript>
<p class="ie-alert">This site uses HTML elements that are not recognized by Internet Explorer 8 and below in the absence of JavaScript. As a result, the site will not be rendered appropriately. To correct this, please either enable JavaScript, upgrade to Internet Explorer 9, or use another browser. Here are the <a href="http://www.enable-javascript.com" title="java script instructions">instructions for enabling JavaScript in your web browser</a>.</p>
</noscript>
<![endif]-->
<#-- VIVO OpenSocial Extension by UCSF -->
<#if openSocial??>
<#if openSocial.visible>
<div id="gadgets-tools" class="gadgets-gadget-parent"></div>
</#if>
</#if>
${body}
</div>
<#include "footer.ftl">
</body>
</html>

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<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<footer role="contentinfo">
<div class="row">
<div class="col-md-12">
<div class="container">
<div class="row">
<div class="col-md-8">
<p class="copyright">
<#if copyright??>
<small>&copy;${copyright.year?c}
<#if copyright.url??>
<a href="${copyright.url}" title="${i18n().menu_copyright}">${copyright.text}</a>
<#else>
${copyright.text}
</#if>
| <a class="terms" href="${urls.termsOfUse}" title="${i18n().menu_termuse}">${i18n().menu_termuse}</a></small> |
</#if>
${i18n().menu_powered} <a class="powered-by-vivo" href="http://vivoweb.org" target="_blank" title="${i18n().menu_powered} VIVO"><strong>VIVO</strong></a>
<#if user.hasRevisionInfoAccess>
| ${i18n().menu_version} <a href="${version.moreInfoUrl}" title="${i18n().menu_version}">${version.label}</a>
</#if>
</p>
</div>
<div class="col-md-4">
<nav role="navigation">
<ul id="footer-nav" role="list">
<li role="listitem"><a href="${urls.about}" title="${i18n().menu_about}">${i18n().menu_about}</a></li>
<#if urls.contact??>
<li role="listitem"><a href="${urls.contact}" title="${i18n().menu_contactus}">${i18n().menu_contactus}</a></li>
</#if>
<li role="listitem"><a href="http://www.vivoweb.org/support" target="blank" title="${i18n().menu_support}">${i18n().menu_support}</a></li>
</ul>
</nav>
</div>
</div>
</div>
</div>
</div>
</footer>
<#include "scripts.ftl">

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<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<meta charset="utf-8" />
<!-- Google Chrome Frame open source plug-in brings Google Chrome's open web technologies and speedy JavaScript engine to Internet Explorer-->
<meta http-equiv="X-UA-Compatible" content="IE=edge,chrome=1">
<meta name="viewport" content="width=device-width, initial-scale=1">
<title>${(title?html)!siteName!}</title>
<#-- VIVO OpenSocial Extension by UCSF -->
<#if openSocial??>
<#if openSocial.visible>
<#-- Required to add these BEFORE stylesheets.flt and headScripts.ftl are processed -->
${stylesheets.add('<link rel="stylesheet" href="${urls.theme}/css/openSocial/gadgets.css" />')}
${headScripts.add('<script type="text/javascript" src="${openSocial.containerJavascriptSrc}"></script>',
'<script type="text/javascript" language="javascript">${openSocial.gadgetJavascript}</script>',
'<script type="text/javascript" src="${urls.base}/js/openSocial/orng.js"></script>')}
</#if>
</#if>
<#include "stylesheets.ftl">
<link rel="stylesheet" href="${urls.theme}/css/screen.css" />
<#include "headScripts.ftl">
<!--[if (gte IE 6)&(lte IE 8)]>
<script type="text/javascript" src="${urls.base}/js/selectivizr.js"></script>
<![endif]-->
<#-- Inject head content specified in the controller. Currently this is used only to generate an rdf link on
an individual profile page. -->
${headContent!}
<link rel="shortcut icon" type="image/x-icon" href="${urls.base}/favicon.ico">

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<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<#-- Template for scripts that must be loaded in the head -->
<script>
var i18nStrings = {
allCapitalized: '${i18n().all_capitalized}',
};
</script>
<script type="text/javascript" src="${urls.base}/js/jquery-1.12.4.min.js"></script>
<script type="text/javascript" src="${urls.base}/js/jquery-migrate-1.4.1.js"></script>
<script type="text/javascript" src="${urls.base}/js/vitroUtils.js"></script>
<#-- script for enabling new HTML5 semantic markup in IE browsers -->
<!--[if lt IE 9]>
<script type="text/javascript" src="${urls.base}/js/html5.js"></script>
<![endif]-->
<script src="${urls.theme}/bootstrap/js/bootstrap.min.js"></script>
<script type="text/javascript">
$(document).ready(function(){
$('#nav').affix({
offset: {
top: $('header').height()
}
});
});
</script>
${headScripts.list()}

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<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<div class="container">
<div class="row">
<div class="col-md-12">
<h1 class="vivo-logo"><a title="${i18n().identity_title}" href="${urls.home}"><span class="displace">${siteName}</span></a></h1>
<#-- Since we are using a graphic text for the tagline, we won't render ${siteTagline}
<#if siteTagline?has_content>
<em>${siteTagline}</em>
</#if>-->
<nav role="navigation">
<ul id="header-nav" role="list">
<#include "languageSelector.ftl">
<li role="listitem"><a href="${urls.index}" title="${i18n().identity_index}">${i18n().identity_index}</a></li>
<#if user.loggedIn>
<#-- COMMENTING OUT THE EDIT PAGE LINK FOR RELEASE 1.5. WE NEED TO IMPLEMENT THIS IN A MORE
USER FRIENDLY WAY. PERHAPS INCLUDE A LINK ON THE PAGES THEMSELVES AND DISPLAY IF THE
USER IS A SITE ADMIN. tlw72
<#if (page??) && (page?is_hash || page?is_hash_ex) && (page.URLToEditPage??) >
<li role="listitem"><a href="${page.URLToEditPage}" title="${i18n().identity_edit}">${i18n().identity_edit}</a></li>
</#if>
-->
<#if user.hasSiteAdminAccess>
<li role="listitem"><a href="${urls.siteAdmin}" title="${i18n().identity_admin}">${i18n().identity_admin}</a></li>
</#if>
<li>
<ul class="dropdown">
<li id="user-menu"><a href="#" title="${i18n().identity_user}">${user.loginName}</a>
<ul class="sub_menu">
<#if user.hasProfile>
<li role="listitem"><a href="${user.profileUrl}" title="${i18n().identity_myprofile}">${i18n().identity_myprofile}</a></li>
</#if>
<#if urls.myAccount??>
<li role="listitem"><a href="${urls.myAccount}" title="${i18n().identity_myaccount}">${i18n().identity_myaccount}</a></li>
</#if>
<li role="listitem"><a href="${urls.logout}" title="${i18n().menu_logout}">${i18n().menu_logout}</a></li>
</ul>
</li>
</ul>
</li>
${scripts.add('<script type="text/javascript" src="${urls.base}/js/userMenu/userMenuUtils.js"></script>')}
<#else>
<li role="listitem"><a class="log-out" title="${i18n().menu_loginfull}" href="${urls.login}">${i18n().menu_login}</a></li>
</#if>
</ul>
</nav>
</div>
</div>
</div>

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<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<div id="nav">
<div class="container">
<nav class="navbar navbar-default">
<p class="navbar-text visible-xs-inline-block">Menu</p>
<button class="navbar-toggle" type="button" data-toggle="collapse" data-target="#navbarContent" aria-controls="navbarContent" aria-expanded="false" aria-label="Toggle navigation">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<div class="collapse navbar-collapse" id="navbarContent">
<ul id="main-nav" role="list" class="nav navbar-nav mr-auto mt-2 mt-md-0">
<#list menu.items as item>
<li class="nav-item" role="listitem" <#if item.active> class="active" </#if>><a href="${item.url}" title="${item.linkText} ${i18n().menu_item}" class="nav-link">${item.linkText}</a></li>
</#list>
</ul>
<ul class="nav pull-right navbar-nav">
<li>
<#include "search.ftl">
</li>
</ul>
</nav>
</div>
</div>

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<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<#if flash?has_content>
<div id="wrapper-content" role="main" class="container">
<#if flash?starts_with(i18n().menu_welcomestart) >
<section id="welcome-msg-container" role="container">
<section id="welcome-message" role="alert">${flash}</section>
</section>
<#else>
<section id="flash-message" role="alert">
${flash}
</section>
</#if>
</div>
</#if>

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<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<#--Breaking this out so this can be utilized by other pages such as the jsp advanced tools pages-->
<section id="search" role="region">
<fieldset>
<legend>${i18n().search_form}</legend>
<form id="search-form" action="${urls.search}" name="search" role="search" accept-charset="UTF-8" method="POST">
<div id="search-field">
<input type="text" name="querytext" class="search-vivo" value="${querytext!}" autocapitalize="off" />
<input type="submit" value="${i18n().search_button}" class="search">
</div>
</form>
</fieldset>
</section>