NIHVIVO-1940
- Modified the grant queries to use role's dateTime as a general rule and default to grant's dateTime when role's dateTime is not available.
This commit is contained in:
parent
4653edf55b
commit
98231b0ce3
5 changed files with 168 additions and 35 deletions
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@ -117,5 +117,8 @@ public class QueryFieldLabels {
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public static final String GRANT_LABEL = "grantLabelLit";
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public static final String GRANT_START_DATE = "grantStartDateLit";
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public static final String GRANT_END_DATE = "grantEndDateLit";
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public static final String GRANT_START_DATE_FOR_GRANT = "grantStartDateForGrantLit";
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public static final String GRANT_END_DATE_FOR_GRANT = "grantEndDateForGrantLit";
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}
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@ -55,16 +55,28 @@ public class CoPIGrantCountQueryRunner implements QueryRunner<CoPIData> {
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private UniqueIDGenerator edgeIDGenerator;
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private static final String SPARQL_QUERY_COMMON_OPTIONAL_BLOCK = ""
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+ "OPTIONAL {"
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+ "?Role core:dateTimeInterval ?dateTimeIntervalValue . "
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private static final String SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME = ""
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+ "OPTIONAL {"
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+ " ?Role core:dateTimeInterval ?dateTimeIntervalValue . "
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+ "?dateTimeIntervalValue core:start ?startDate . "
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+ "?startDate core:dateTime ?startDateTimeValue . "
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+ "OPTIONAL {"
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+ "?dateTimeIntervalValue core:end ?endDate . "
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+ "?endDate core:dateTime ?endDateTimeValue . "
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+ "}"
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+ "}" ;
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+ "} . " ;
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private static final String SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME = ""
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+ "OPTIONAL {"
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+ " ?Grant core:dateTimeInterval ?dateTimeIntervalValueForGrant . "
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+ "?dateTimeIntervalValueForGrant core:start ?startDateForGrant . "
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+ "?startDateForGrant core:dateTime ?startDateTimeValueForGrant . "
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+ "OPTIONAL {"
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+ "?dateTimeIntervalValueForGrant core:end ?endDateForGrant . "
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+ "?endDateForGrant core:dateTime ?endDateTimeValueForGrant . "
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+ "}"
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+ "}" ;
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public CoPIGrantCountQueryRunner(String egoURI,
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DataSource dataSource, Log log) {
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@ -89,6 +101,8 @@ public class CoPIGrantCountQueryRunner implements QueryRunner<CoPIData> {
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+ " (str(?GrantLabel) as ?" + QueryFieldLabels.GRANT_LABEL + ") "
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+ " (str(?startDateTimeValue) as ?grantStartDateLit) "
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+ " (str(?endDateTimeValue) as ?grantEndDateLit) "
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+ " (str(?startDateTimeValueForGrant) as ?grantStartDateForGrantLit) "
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+ " (str(?endDateTimeValueForGrant) as ?grantEndDateForGrantLit) "
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+ " (str(?CoPI) as ?" + QueryFieldLabels.CO_PI_URL + ") "
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+ " (str(?CoPILabel) as ?" + QueryFieldLabels.CO_PI_LABEL + ") "
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+ "WHERE "
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@ -108,7 +122,9 @@ public class CoPIGrantCountQueryRunner implements QueryRunner<CoPIData> {
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+ "?CoPI rdfs:label ?CoPILabel . "
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME
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+ "} "
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@ -128,7 +144,10 @@ public class CoPIGrantCountQueryRunner implements QueryRunner<CoPIData> {
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+ "?CoPI rdfs:label ?CoPILabel . "
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME
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+ "} "
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@ -148,7 +167,10 @@ public class CoPIGrantCountQueryRunner implements QueryRunner<CoPIData> {
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+ "?CoPI rdfs:label ?CoPILabel . "
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME
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+ "} "
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@ -169,7 +191,10 @@ public class CoPIGrantCountQueryRunner implements QueryRunner<CoPIData> {
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+ "?CoPI rdfs:label ?CoPILabel . "
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME
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+ "} "
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@ -189,7 +214,10 @@ public class CoPIGrantCountQueryRunner implements QueryRunner<CoPIData> {
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+ "?CoPI rdfs:label ?CoPILabel . "
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME
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+ "} "
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@ -209,7 +237,10 @@ public class CoPIGrantCountQueryRunner implements QueryRunner<CoPIData> {
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+ "?CoPI rdfs:label ?CoPILabel . "
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME
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+ "} "
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@ -229,7 +260,10 @@ public class CoPIGrantCountQueryRunner implements QueryRunner<CoPIData> {
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+ "?CoPI rdfs:label ?CoPILabel . "
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME
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+ "} "
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@ -249,7 +283,10 @@ public class CoPIGrantCountQueryRunner implements QueryRunner<CoPIData> {
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+ "?CoPI rdfs:label ?CoPILabel . "
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME
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+ "} "
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@ -269,7 +306,10 @@ public class CoPIGrantCountQueryRunner implements QueryRunner<CoPIData> {
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+ "?CoPI rdfs:label ?CoPILabel . "
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME
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+ "} "
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+ "} ";
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@ -609,12 +649,21 @@ public class CoPIGrantCountQueryRunner implements QueryRunner<CoPIData> {
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RDFNode grantStartYear = solution.get(QueryFieldLabels.GRANT_START_DATE);
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if (grantStartYear != null) {
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grant.setGrantStartDate(grantStartYear.toString());
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}else{
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grantStartYear = solution.get(QueryFieldLabels.GRANT_START_DATE_FOR_GRANT);
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if(grantStartYear != null){
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grant.setGrantStartDate(grantStartYear.toString());
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}
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}
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RDFNode grantEndDate = solution.get(QueryFieldLabels
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.GRANT_END_DATE);
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RDFNode grantEndDate = solution.get(QueryFieldLabels.GRANT_END_DATE);
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if (grantEndDate != null) {
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grant.setGrantEndDate(grantEndDate.toString());
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}else{
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grantEndDate = solution.get(QueryFieldLabels.GRANT_END_DATE_FOR_GRANT);
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if(grantEndDate != null){
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grant.setGrantEndDate(grantEndDate.toString());
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}
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}
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return grant;
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@ -57,21 +57,37 @@ public class EntityGrantCountQueryRunner implements QueryRunner<Entity> {
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+ " (str(?Grant) as ?grantLit) "
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+ " (str(?GrantLabel) as ?grantLabelLit) "
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+ " (str(?startDateTimeValue) as ?grantStartDateLit) "
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+ " (str(?endDateTimeValue) as ?grantEndDateLit) ";
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+ " (str(?endDateTimeValue) as ?grantEndDateLit) "
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+ " (str(?startDateTimeValueForGrant) as ?grantStartDateForGrantLit) "
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+ " (str(?endDateTimeValueForGrant) as ?grantEndDateForGrantLit) " ;
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private static final String SPARQL_QUERY_COMMON_WHERE_CLAUSE = " "
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private static final String SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME = " "
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+ " ?SecondaryPosition rdfs:label ?SecondaryPositionLabel . "
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+ " ?Role core:roleIn ?Grant . "
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+ " ?Grant rdfs:label ?GrantLabel . "
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+ "OPTIONAL {"
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+ "?Role core:dateTimeInterval ?dateTimeIntervalValue . "
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+ " ?Role core:dateTimeInterval ?dateTimeIntervalValue . "
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+ "?dateTimeIntervalValue core:start ?startDate . "
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+ "?startDate core:dateTime ?startDateTimeValue . "
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+ "OPTIONAL {"
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+ "?dateTimeIntervalValue core:end ?endDate . "
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+ "?endDate core:dateTime ?endDateTimeValue . "
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+ "}"
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+ "}" ;
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+ "}" ;
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private static final String SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME = " "
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+ " ?SecondaryPosition rdfs:label ?SecondaryPositionLabel . "
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+ " ?Role core:roleIn ?Grant . "
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+ " ?Grant rdfs:label ?GrantLabel . "
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+ "OPTIONAL {"
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+ " ?Grant core:dateTimeInterval ?dateTimeIntervalValueForGrant . "
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+ "?dateTimeIntervalValueForGrant core:start ?startDateForGrant . "
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+ "?startDateForGrant core:dateTime ?startDateTimeValueForGrant . "
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+ "OPTIONAL {"
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+ "?dateTimeIntervalValueForGrant core:end ?endDateForGrant . "
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+ "?endDateForGrant core:dateTime ?endDateTimeValueForGrant . "
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+ "}"
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+ "}" ;
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private static String ENTITY_LABEL = QueryFieldLabels.ORGANIZATION_LABEL;
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@ -125,11 +141,21 @@ public class EntityGrantCountQueryRunner implements QueryRunner<Entity> {
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RDFNode grantStartDateNode = solution.get(QueryFieldLabels.GRANT_START_DATE);
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if(grantStartDateNode != null){
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grant.setGrantStartDate(grantStartDateNode.toString());
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}else {
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grantStartDateNode = solution.get(QueryFieldLabels.GRANT_START_DATE_FOR_GRANT);
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if(grantStartDateNode != null){
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grant.setGrantStartDate(grantStartDateNode.toString());
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}
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}
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RDFNode grantEndDateNode = solution.get(QueryFieldLabels.GRANT_END_DATE);
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if(grantEndDateNode != null){
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grant.setGrantEndDate(grantEndDateNode.toString());
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}else {
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grantEndDateNode = solution.get(QueryFieldLabels.GRANT_END_DATE_FOR_GRANT);
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if(grantEndDateNode != null){
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grant.setGrantEndDate(grantEndDateNode.toString());
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}
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}
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}
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@ -212,39 +238,45 @@ public class EntityGrantCountQueryRunner implements QueryRunner<Entity> {
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+ " ?subOrganization rdfs:label ?subOrganizationLabel ; core:organizationForPosition ?Position . "
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+ " ?Position rdf:type core:Position ; core:positionForPerson ?Person ."
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+ " ?Person core:hasCo-PrincipalInvestigatorRole ?Role ; rdfs:label ?PersonLabel ; core:personInPosition ?SecondaryPosition . "
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+ SPARQL_QUERY_COMMON_WHERE_CLAUSE + "}"
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME + "}"
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+ "UNION "
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+ "{ "
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+ "<" + queryURI + "> core:hasSubOrganization ?subOrganization . "
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+ " ?subOrganization rdfs:label ?subOrganizationLabel ; core:organizationForPosition ?Position . "
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+ " ?Position rdf:type core:Position ; core:positionForPerson ?Person ."
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+ " ?Person core:hasPrincipalInvestigatorRole ?Role ; rdfs:label ?PersonLabel ; core:personInPosition ?SecondaryPosition . "
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+ SPARQL_QUERY_COMMON_WHERE_CLAUSE + "}"
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME + "}"
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+ "UNION "
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+ "{ "
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+ "<" + queryURI + "> core:hasSubOrganization ?subOrganization . "
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+ " ?subOrganization rdfs:label ?subOrganizationLabel ; core:organizationForPosition ?Position . "
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+ " ?Position rdf:type core:Position ; core:positionForPerson ?Person ."
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+ " ?Person core:hasInvestigatorRole ?Role ; rdfs:label ?PersonLabel ; core:personInPosition ?SecondaryPosition . "
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+ SPARQL_QUERY_COMMON_WHERE_CLAUSE + "}"
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME + "}"
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+ "UNION "
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+ "{ "
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+ "<" + queryURI + "> core:organizationForPosition ?Position . "
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+ " ?Position rdf:type core:Position ; core:positionForPerson ?Person ."
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+ " ?Person core:hasCo-PrincipalInvestigatorRole ?Role ; rdfs:label ?PersonLabel ; core:personInPosition ?SecondaryPosition . "
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+ SPARQL_QUERY_COMMON_WHERE_CLAUSE + "}"
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME + "}"
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+ "UNION "
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+ "{ "
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+ "<" + queryURI + "> core:organizationForPosition ?Position . "
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+ " ?Position rdf:type core:Position ; core:positionForPerson ?Person ."
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+ " ?Person core:hasPrincipalInvestigatorRole ?Role ; rdfs:label ?PersonLabel ; core:personInPosition ?SecondaryPosition . "
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+ SPARQL_QUERY_COMMON_WHERE_CLAUSE + "}"
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME + "}"
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+ "UNION "
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+ "{ "
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+ "<" + queryURI + "> core:organizationForPosition ?Position . "
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+ " ?Position rdf:type core:Position ; core:positionForPerson ?Person ."
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+ " ?Person core:hasInvestigatorRole ?Role ; rdfs:label ?PersonLabel ; core:personInPosition ?SecondaryPosition . "
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+ SPARQL_QUERY_COMMON_WHERE_CLAUSE + "}"
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME + "}"
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+ " } ";
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//System.out.println("\n\nEntity Grant Count query is: "+ sparqlQuery);
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@ -50,23 +50,39 @@ public class PersonGrantCountQueryRunner implements QueryRunner<Set<Grant>>{
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private Log log;
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private static final String SPARQL_QUERY_COMMON_SELECT_CLAUSE = ""
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+ "SELECT (str(?PILabel) as ?PILabelLit) "
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+ "(str(?Grant) as ?grantLit)"
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+ "(str(?GrantLabel) as ?grantLabelLit)"
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+ " SELECT (str(?PILabel) as ?PILabelLit) "
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+ " (str(?Grant) as ?grantLit)"
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+ " (str(?GrantLabel) as ?grantLabelLit)"
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+ " (str(?startDateTimeValue) as ?grantStartDateLit) "
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+ " (str(?endDateTimeValue) as ?grantEndDateLit) ";
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+ " (str(?endDateTimeValue) as ?grantEndDateLit) "
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+ " (str(?startDateTimeValueForGrant) as ?grantStartDateForGrantLit) "
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+ " (str(?endDateTimeValueForGrant) as ?grantEndDateForGrantLit) ";
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private static final String SPARQL_QUERY_COMMON_OPTIONAL_BLOCK = ""
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+ "OPTIONAL {"
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+ "?Role core:dateTimeInterval ?dateTimeIntervalValue . "
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private static final String SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME = ""
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+ "OPTIONAL {"
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+ " ?Role core:dateTimeInterval ?dateTimeIntervalValue . "
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+ "?dateTimeIntervalValue core:start ?startDate . "
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+ "?startDate core:dateTime ?startDateTimeValue . "
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+ "OPTIONAL {"
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+ "?dateTimeIntervalValue core:end ?endDate . "
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+ "?endDate core:dateTime ?endDateTimeValue . "
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+ "}"
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+ "} . " ;
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private static final String SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME = ""
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+ "OPTIONAL {"
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+ " ?Grant core:dateTimeInterval ?dateTimeIntervalValueForGrant . "
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+ "?dateTimeIntervalValueForGrant core:start ?startDateForGrant . "
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+ "?startDateForGrant core:dateTime ?startDateTimeValueForGrant . "
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+ "OPTIONAL {"
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+ "?dateTimeIntervalValueForGrant core:end ?endDateForGrant . "
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+ "?endDateForGrant core:dateTime ?endDateTimeValueForGrant . "
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+ "}"
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+ "}" ;
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public PersonGrantCountQueryRunner(String personURI, DataSource dataSource, Log log){
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this.personURI = personURI;
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@ -90,11 +106,21 @@ public class PersonGrantCountQueryRunner implements QueryRunner<Set<Grant>>{
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RDFNode grantStartDateNode = solution.get(QueryFieldLabels.GRANT_START_DATE);
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if(grantStartDateNode != null){
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grant.setGrantStartDate(grantStartDateNode.toString());
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}else {
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grantStartDateNode = solution.get(QueryFieldLabels.GRANT_START_DATE_FOR_GRANT);
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if(grantStartDateNode != null){
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grant.setGrantStartDate(grantStartDateNode.toString());
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}
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}
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RDFNode grantEndDateNode = solution.get(QueryFieldLabels.GRANT_END_DATE);
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if(grantEndDateNode != null){
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grant.setGrantEndDate(grantEndDateNode.toString());
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}else {
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grantEndDateNode = solution.get(QueryFieldLabels.GRANT_END_DATE_FOR_GRANT);
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if(grantEndDateNode != null){
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grant.setGrantEndDate(grantEndDateNode.toString());
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}
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}
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/*
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@ -147,7 +173,9 @@ public class PersonGrantCountQueryRunner implements QueryRunner<Set<Grant>>{
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+ "?Grant rdfs:label ?GrantLabel . "
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME
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+ "} "
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@ -161,7 +189,10 @@ public class PersonGrantCountQueryRunner implements QueryRunner<Set<Grant>>{
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+ "?Grant rdfs:label ?GrantLabel . "
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
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+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME
|
||||
|
||||
|
||||
+ "} "
|
||||
|
||||
|
@ -175,7 +206,10 @@ public class PersonGrantCountQueryRunner implements QueryRunner<Set<Grant>>{
|
|||
|
||||
+ "?Grant rdfs:label ?GrantLabel . "
|
||||
|
||||
+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK
|
||||
+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_ROLE_DATE_TIME
|
||||
|
||||
+ SPARQL_QUERY_COMMON_OPTIONAL_BLOCK_FOR_GRANT_DATE_TIME
|
||||
|
||||
|
||||
+ "} "
|
||||
|
||||
|
|
|
@ -63,7 +63,22 @@ public class Grant extends Individual {
|
|||
}
|
||||
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean equals(Object other){
|
||||
boolean result = false;
|
||||
if (other instanceof Grant){
|
||||
Grant grant = (Grant) other;
|
||||
result = (this.getIndividualLabel().equals(grant.getIndividualLabel())
|
||||
&& this.getIndividualURI().equals(grant.getIndividualURI()));
|
||||
}
|
||||
return result;
|
||||
}
|
||||
|
||||
@Override
|
||||
public int hashCode(){
|
||||
return(41*(getIndividualLabel().hashCode() + 41*(getIndividualURI().hashCode())));
|
||||
}
|
||||
|
||||
public String getGrantStartDate() {
|
||||
return grantStartDate;
|
||||
|
|
Loading…
Add table
Reference in a new issue