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Fixed links for TOC.

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ejc12 2011-02-02 04:01:34 +00:00
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doc/upgrade-1.2.html
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@ -16,17 +16,6 @@
January 28, 2011 - Upgrading from Release 1 v1.1 to Release 1
v1.2
</small>
<blockquote>
<b>Missing pieces and fixes</b>
<ul>
<li>
Link to install pdf online at SF
</li>
<li>
<br>
</li>
</ul>
</blockquote>
<toc>
<ul>
<li>
@ -166,11 +155,11 @@
<a href="#fileSystem">File Storage System Upgrade</a>
<ol class="roman2">
<li>
<a href="#verify_ontology_upgrade">Changes to the File
<a href="#changes_to_storage">Changes to the File
Storage System</a>
</li>
<li>
<a href="#verify_ontology_upgrade">Verify File Storage
<a href="#verify_file_upgrade">Verify File Storage
System upgrade process</a>
</li>
</ol>
@ -220,7 +209,7 @@
below for more information.
</li>
</ul>
<h3 id="upgrade_process">The Upgrade Process</h3>
<h3 id="upgrade_process">II. The Upgrade Process</h3>
<p>
1. Download the new distribution file and unpack it into a new
source directory.
@ -611,7 +600,7 @@
6. Start Apache Tomcat and log in to VIVO.
</p>
<h3 id="ontology">III. Ontology Changes</h3>
<h4>A. Verify Ontology upgrade process</h4>
<h4 id="verify_ontology_upgrade">i. Verify Ontology upgrade process</h4>
<p>
After Apache Tomcat is started, these files should be reviewed to
verify that the automated upgrade process was executed
@ -659,7 +648,7 @@
knowledge base.
</dd>
</dl>
<h4>B. Ontology knowledge base manual review</h4>
<h4 id="ontology_knowledge_base">ii. Ontology knowledge base manual review</h4>
<p>
Changes to the VIVO core ontology may require corresponding
modifications of the knowledge base instance data and local ontology
@ -723,7 +712,7 @@
</dl>
<h3 id="fileSystem">IV. File Storage System Upgrade</h3>
<h4>A. Changes to the File Storage System</h4>
<h4 id="changes_to_storage">i. Changes to the File Storage System</h4>
<p>
Each uploaded file exists as an individual entity in VIVO. When the
browser requests an upload file from VIVO, the data model is queried to
@ -741,7 +730,7 @@
it will initiate a process to calculate the "Alias URL"
for each existing file and store it in the data model for fast access.
</p>
<h4>B. Verify File Storage System upgrade process</h4>
<h4 id="verify_file_upgrade">ii. Verify File Storage System upgrade process</h4>
<p>
The File Storage upgrade process will create a log file in the
VIVO upload directory. You should review this file to ensure that
@ -763,8 +752,9 @@
</dd>
</dl>
<h3>V. Theme Changes</h3>
<p>
<h3 id="theme">V. Theme Changes</h3>
<h4 style="color:red">Need Nick to help with this section</h4>
<p>
VIVO 1.2 comes with a new theme called "wilma" that uses the FreeMarker template
engine for generating web pages. The theme is located in /vivo/themes/wilma and
the FreeMarker files have an ftl (for FreeMarker Template Language) extension.
@ -777,8 +767,7 @@
the vivo-basic theme in its original directory, you need not take any
action in order to convert your site to the VIVO 1.1 theme.
</p>
<h1>I THINK THIS SECTION NEEDS MAJOR CHANGING AND I NEED HELP WITH IT, Por Favor</h1>
<p>
<p>
B. If you created your own theme directory in VIVO 1.1, follow the steps below
under sections "Templates," "Stylesheets," and "Site Icons" to upgrade your
theme to VIVO 1.2.