VIVO-469 run the URL Finders from an RDFService, not an OntModel
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j2blake
parent
10631e1a29
commit
9f31c3f08b
3 changed files with 65 additions and 152 deletions
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@ -12,11 +12,13 @@ import org.junit.Test;
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import com.hp.hpl.jena.ontology.OntModel;
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import com.hp.hpl.jena.rdf.model.ModelFactory;
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import edu.cornell.mannlib.vitro.webapp.search.indexing.AdditionalURIsForContextNodes;
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import edu.cornell.mannlib.vitro.webapp.rdfservice.impl.jena.model.RDFServiceModel;
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public class AdditionalURIsForContextNodesTest {
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private AdditionalURIsForContextNodes uriFinder;
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@Test
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public void testPositionChanges(){
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String n3 =
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@ -59,12 +61,7 @@ public class AdditionalURIsForContextNodesTest {
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"<http://vivoweb.org/ontology/core#DateTimeInterval> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . \n" +
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"<http://vivoweb.org/ontology/core#Department> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> . \n" ;
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//make a test model with an person, an authorship context node and a book
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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populateModelAndCreateUriFinder(n3);
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//if the person changes then the org needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932");
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@ -107,21 +104,15 @@ public class AdditionalURIsForContextNodesTest {
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" core:contributingRole <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2577> . \n" +
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" <http://vivo.scripps.edu/individual/n14979> a <http://xmlns.com/foaf/0.1/Person> , owl:Thing , <http://xmlns.com/foaf/0.1/Agent> . \n";
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//make a test model with an person, an authorship context node and a book
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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populateModelAndCreateUriFinder(n3);
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//get additional uris for org
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2592");
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assertTrue("did not find person for context node", uris.contains("http://vivo.scripps.edu/individual/n14979" ));
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}
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@Test
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public void testLeaderRoleChanges(){
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@ -153,13 +144,7 @@ public class AdditionalURIsForContextNodesTest {
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"<http://vivo.scripps.edu/individual/n7080> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
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"<http://vivo.scripps.edu/individual/n7080> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Organization> . \n " ;
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//make a test model with an person, a leader role node and a university
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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populateModelAndCreateUriFinder(n3);
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//if the person changes then the university needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n2027");
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@ -168,8 +153,6 @@ public class AdditionalURIsForContextNodesTest {
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//if the university changes then the person needs to be updated
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uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n7080");
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assertTrue("did not find person for context node", uris.contains("http://vivo.scripps.edu/individual/n2027" ));
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}
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@ -204,14 +187,7 @@ public class AdditionalURIsForContextNodesTest {
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"<http://vivo.scripps.edu/individual/n6004> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
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"<http://vivo.scripps.edu/individual/n6004> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Organization> . \n " ;
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//make a test model with an person, a member role node and a university
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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populateModelAndCreateUriFinder(n3);
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//if the person changes then the university needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4519");
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@ -254,15 +230,8 @@ public class AdditionalURIsForContextNodesTest {
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"<http://vivo.scripps.edu/individual/n5177> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Project> . \n" +
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"<http://vivo.scripps.edu/individual/n5177> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n5177> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Process> . \n" ;
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//make a test model with an person, a clinical role node and a project
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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populateModelAndCreateUriFinder(n3);
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//if the person changes then the project needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4858");
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@ -303,12 +272,7 @@ public class AdditionalURIsForContextNodesTest {
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"<http://vivo.scripps.edu/individual/n4442> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n4442> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.obolibrary.org/obo/ERO_0000005> . \n" ;
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//make a test model with an person, a clinical role node and a service
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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populateModelAndCreateUriFinder(n3);
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//if the person changes then the service needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n5651");
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@ -350,13 +314,7 @@ public class AdditionalURIsForContextNodesTest {
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"<http://vivo.scripps.edu/individual/n1305> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.org/NET/c4dm/event.owl#Event> . \n" +
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"<http://vivo.scripps.edu/individual/n1305> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" ;
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//make a test model with an person, a presenter role node and a presentation
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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populateModelAndCreateUriFinder(n3);
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//if the person changes then the presentation needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n5596");
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@ -398,13 +356,8 @@ public class AdditionalURIsForContextNodesTest {
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"<http://vivo.scripps.edu/individual/n4107> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.org/NET/c4dm/event.owl#Event> . \n " +
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"<http://vivo.scripps.edu/individual/n4107> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
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"<http://vivo.scripps.edu/individual/n4107> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#InvitedTalk> . \n " ;
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//make a test model with an person, a presenter role node and an invited talk
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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populateModelAndCreateUriFinder(n3);
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//if the person changes then the invited talk needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4112");
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@ -447,13 +400,7 @@ public class AdditionalURIsForContextNodesTest {
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"<http://vivo.scripps.edu/individual/n4252> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n4252> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Grant> . \n" ;
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//make a test model with an person, a researcher role node and a grant
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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populateModelAndCreateUriFinder(n3);
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//if the person changes then the grant needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4957");
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@ -497,14 +444,7 @@ public class AdditionalURIsForContextNodesTest {
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"<http://vivo.scripps.edu/individual/n564> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
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"<http://vivo.scripps.edu/individual/n564> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Process> . \n " ;
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//make a test model with an person, a researcher role node and a project
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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populateModelAndCreateUriFinder(n3);
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//if the person changes then the project needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n2029");
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@ -548,13 +488,7 @@ public class AdditionalURIsForContextNodesTest {
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"<http://vivo.scripps.edu/individual/n1742> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n1742> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Grant> . \n" ;
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//make a test model with an person, a principal investigator role node and a grant
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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populateModelAndCreateUriFinder(n3);
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//if the person changes then the grant needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n2368");
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@ -598,13 +532,8 @@ public class AdditionalURIsForContextNodesTest {
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"<http://vivo.scripps.edu/individual/n4931> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n4931> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Grant> . \n" ;
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//make a test model with an person, a co-principal investigator role node and a grant
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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populateModelAndCreateUriFinder(n3);
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//if the copi changes then the grant needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n1373");
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assertTrue("did not find grant for co-pi", uris.contains("http://vivo.scripps.edu/individual/n4931" ));
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@ -646,14 +575,8 @@ public class AdditionalURIsForContextNodesTest {
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"<http://vivo.scripps.edu/individual/n160> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n160> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Grant> . \n" ;
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//make a test model with an person, a investigator role node and a grant
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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populateModelAndCreateUriFinder(n3);
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//if the investigator changes then the grant needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n5282");
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assertTrue("did not find grant for investigator", uris.contains("http://vivo.scripps.edu/individual/n160" ));
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@ -661,10 +584,21 @@ public class AdditionalURIsForContextNodesTest {
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//if the grant changes then the investigator needs to be updated
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uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n160");
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assertTrue("did not find investigator for grant", uris.contains("http://vivo.scripps.edu/individual/n5282" ));
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}
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// ----------------------------------------------------------------------
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// Helper methods
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// ----------------------------------------------------------------------
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/**
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* Build a Model from this N3 string, and create a URI Finder based on that
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* Model.
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*/
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private void populateModelAndCreateUriFinder(String n3String) {
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OntModel model = ModelFactory.createOntologyModel();
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model.read(new StringReader(n3String), null, "N3");
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uriFinder = new AdditionalURIsForContextNodes(
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new RDFServiceModel(model));
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}
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}
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