diff --git a/productMods/WEB-INF/filegraph/tbox/scires-1.2.owl b/productMods/WEB-INF/filegraph/tbox/scires-1.2.owl index 1a58721c..31e78db3 100644 --- a/productMods/WEB-INF/filegraph/tbox/scires-1.2.owl +++ b/productMods/WEB-INF/filegraph/tbox/scires-1.2.owl @@ -27,17 +27,17 @@ number of human participants in the study (trial). + + + + + A protocol is a plan specification which has sufficient level of detail and quantitative information to communicate it between domain experts, so that different domain experts will reliably be able to independently reproduce the process. A plan specification that allows different domain experts to reliably and independently reproduce a process. - - - - - Phase 4 Clinical Trial @@ -82,17 +82,17 @@ + + + + + A service that produces a physical object or data, such as a custom micro-array chip, a made to order antibody, or a behavioral dataset A service that produces a physical object or data. - - - - - diff --git a/productMods/WEB-INF/filegraph/tbox/vitro-0.7.owl b/productMods/WEB-INF/filegraph/tbox/vitro-0.7.owl index 79ce94f0..457687a0 100644 --- a/productMods/WEB-INF/filegraph/tbox/vitro-0.7.owl +++ b/productMods/WEB-INF/filegraph/tbox/vitro-0.7.owl @@ -281,5 +281,8 @@ xmlns:vitro="&vitro;" + + + diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-core-1.2.owl b/productMods/WEB-INF/filegraph/tbox/vivo-core-1.2.owl index c6a7a6b8..3f5afc01 100644 --- a/productMods/WEB-INF/filegraph/tbox/vivo-core-1.2.owl +++ b/productMods/WEB-INF/filegraph/tbox/vivo-core-1.2.owl @@ -19,17 +19,27 @@ xmlns:dcterms="http://purl.org/dc/terms/" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" > - - - - - A PMCID is a unique PubMed Central reference number, which is assigned to each full-text record made available A PMCID is a unique PubMed Central reference number, which is assigned to each full-text record made available in PubMed Central. The PMCID is issued shortly after the PI or author approves the PubMed Central formatted web version of the submission. + + + + + + + + 1 + + + + + + + http://purl.org/ontology/bibo/ Short Definition from bibo ontology @@ -54,6 +64,11 @@ + + + + + @@ -70,6 +85,16 @@ + + + + + + + + + + unstable @@ -85,40 +110,20 @@ - - - - - Use only if no specific subclasses of core:Student describe the person. A person who is enrolled in an educational institution. - - - - - - - - - - - + UN Cartographic Section UN Cartographic Section - + - - - - - 1 - + @@ -126,6 +131,26 @@ + + + + + + + + 1 + + + + + + + + + + + + @@ -141,25 +166,20 @@ Accounting & Research Services Assistant; Director of Information Technology Staff, support, and other non-academic positions. - + + A position classified as professional, staff, support, or any other non-academic role - - - - - - - A granted license, which gives a 'permission to practice.' - A granted license, which gives a 'permission to practice.' Such licenses are usually issued in order to regulate some activity that is deemed to be dangerous or a threat to the person or the public or which involves a high level of specialized skill. See also core:License. + + http://purl.org/ontology/bibo/ @@ -169,29 +189,24 @@ Serial Item and Contribution Identifier + + + + + - - - - - - + - - - - - - - + 1 + Definition take from: http://en.wikipedia.org/wiki/Government_agency. @@ -207,14 +222,19 @@ Public description modified from the information on this page: http://www.w3.org/TR/2005/WD-swbp-skos-core-guide-20050510/#sechierarchy . - + - - + + + + + + + @@ -241,41 +261,51 @@ + + + 1 + + Definition take from: http://xmlns.com/foaf/spec/#term_based_near . foaf indicates that the status of this term is "unstable". "The based_near relationship relates two "spatial things" (anything that can be somewhere), the latter typically described using the geo:lat / geo:long geo-positioning vocabulary (http://www.w3.org/2003/01/geo/wgs84_pos#). This allows us to say describe the typical latitute and longitude of, say, a Person (people are spatial things - they can be places) without implying that a precise location has been given." Used to link an agent, related to bibliographic things, to a place where it is based near: can be a city, a monument, a building, etc. - - - - - - Official or legal permission to do something + Official or legal permission to do something Licenses are usually issued in order to regulate some activity that is deemed to be dangerous or a threat to the person or the public or which involves a high level of specialized skill. See also core:Licensure. + + + + + Note that the administering department is not the central research administration office (such as University of Florida DSP or Cornell OSP) -- we didn't see a need to record a relationship to that office because it implicitly manages all grants. Also note that this is the administering organization for the grant at the awardee side. - - The most general classification of a person - - - - - + + The most general classification of a person + + + + + + + + + + http://purl.org/ontology/bibo/ @@ -284,25 +314,20 @@ Starting page number within a continuous page range. stable - - - - - - - - - - - + - - + + + + + + + @@ -310,20 +335,25 @@ - + - - + 1 + - + - 1 - + 1 + - + - - + + + + + + 1 + @@ -333,10 +363,15 @@ http://www.fao.org/figis/servlet/RefServlet Fisheries Global Information System http://www.fao.org/figis/servlet/RefServlet - + - - + + + + + + + @@ -347,11 +382,6 @@ Works prepared by hand including handwritten or typescript drafts of pre-publication papers or works not otherwise reproduced in multiple copies http://purl.org/ontology/bibo/ - - - 1 - - @@ -368,10 +398,10 @@ - + - - + + Smaller administrative division into which a country may be divided. @@ -381,18 +411,9 @@ Short definition was partially taken from http://en.wikipedia.org/wiki/Subnational_entity. - - - 1 - - - - - - - + @@ -402,10 +423,10 @@ - + @@ -415,33 +436,32 @@ + - + + - - + - - - - - + + + - - + + - + @@ -487,16 +507,6 @@ http://www.fao.org/termportal/contr/es/ http://www.fao.org/termportal/contr/ar/ - - - 1 - - - - - - - @@ -511,31 +521,21 @@ - - - - - A retired faculty member who has retained their rank, title and privileges. - + - - + 1 + Audiovisual recording in video format - - - - - Short Definition from the bibo ontology @@ -546,19 +546,14 @@ something that is printed or published and distributed, esp. a given number of a periodical - - + - - - - - + - + In VIVO, a collection point for metadata regarding a digital file that has been uploaded and stored in the VIVO system. Includes metadata such as the filename, mime type, link to a thumbnail image (for image files), etc. A File instance refers to its FileByteStream through the "downloadLocation" property. A digital file on a computer file system @@ -586,11 +581,6 @@ - - - 1 - - UN Statistics Division http://unstats.un.org/unsd/methods/m49/m49alpha.htm @@ -601,15 +591,10 @@ UN Statistics Division - + - - - - - - - + + http://faostat.fao.org @@ -621,15 +606,10 @@ http://faostat.fao.org/default.aspx?lang=es FAOSTAT http://faostat.fao.org - + - - - - - - - + + @@ -647,11 +627,6 @@ A short written piece focused on an event or announcement of note, having a defined publication time and of less enduring interest than a news feature. - - - 1 - - @@ -680,18 +655,13 @@ FAO terminology. FAOTERM. http://www.fao.org/termportal/en/ http://www.iso.org/iso/fr/country_codes/iso_3166_code_lists.htm - - - 1 - - - Authorship of journal articles, books and other original works is a means by which academics communicate the results of their scholarly work, establish priority for their discoveries, and build their reputation among their peers. This class allows for linking an author to a publication while indicating information about that author's authorship. + Contains the authors name, their rank in the publication, and whether or not they are a corresponding author on the publication. Currently any abstract name is given to members of this class. This could change in the future. @@ -703,21 +673,16 @@ This class allows for linking an author to a publication while indicating inform Bibo Definition: A seminar, discussion group, or the like, that emphasizes exchange of ideas and the demonstration and application of techniques, skills, etc. - - - - - - - - 1 - - - + + + + + + @@ -736,11 +701,11 @@ This class allows for linking an author to a publication while indicating inform stable - Committee on Institutional Cooperation (CIC); The Five Colleges of Ohio Independent organizations formally working together toward a common goal, under an expressed agreement - + + @@ -750,20 +715,20 @@ This class allows for linking an author to a publication while indicating inform - - - + + + A group of related documents issued at regular intervals. http://purl.org/ontology/bibo/ stable - + - + - - + + @@ -800,28 +765,20 @@ This class allows for linking an author to a publication while indicating inform Short Definition take from http://en.wiktionary.org/wiki/continent. - - - - - - + 1 - - - - - 1 - + - - + + + + http://www.fao.org/termportal/contr/zh/ @@ -856,7 +813,7 @@ This class allows for linking an author to a publication while indicating inform - + @@ -868,10 +825,10 @@ This class allows for linking an author to a publication while indicating inform - - - An issued certificate see also core:Certificate + An issued certificate + + @@ -937,11 +894,6 @@ This class allows for linking an author to a publication while indicating inform Contents [hide] - - - 1 - - A unit devoted primarily to extension activities, whether for outreach or research. @@ -953,6 +905,10 @@ Contents Public Description for bibo:distributor taken from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . + + + + FAO terminology @@ -966,18 +922,18 @@ Contents http://www.fao.org/termportal/contr/en/ + + + + + - A negotiated arrangement between two or more parties regarding a course of action - - - - - - - - + + + + @@ -1010,17 +966,22 @@ Contents A gathering of people for a defined purpose, not necessarily public or announced - - - - - + + + 1 + + + + + + 2 + Library of Congress Blog @@ -1028,11 +989,6 @@ Contents Regularly updated online journal or newsletter by one or more writers, called bloggers, containing articles and commentary of interest to the blogger - - - 1 - - @@ -1073,6 +1029,11 @@ Contents + + + + + @@ -1083,11 +1044,6 @@ Contents Either city or town - a thickly populated area having fixed boundaries and certain local powers of government. - - - 1 - - @@ -1096,22 +1052,22 @@ Contents - That is a position held by an academic faculty member who works for administration. - + + Associate Dean An academic administrative position (associate dean, etc.) as distinct from a professional administrative position (non-academic) + server; Bruker Vector-33 FT-IR - + A network server is one example. Medical schools and research laboratories can list professional equipment, such as microscopes. - A physical object provided for specific purpose, task or occupation. - + @@ -1124,22 +1080,22 @@ Contents - http://purl.org/ontology/bibo/ A specific journal article + http://purl.org/ontology/bibo/ - + A written composition in prose, usually nonfiction, on a specific topic, forming an independent part of a periodical or book Short Definition modified from the bibo ontology. A written composition in prose, usually nonfiction, on a specific topic, forming an independent part of a book or other publication, as a newspaper or magazine. - stable + + + Director of Admissions and Placement; Associate University Librarian Particular position in an organization, commonly identified by job title, and normally associated with a job description that details the tasks and responsibilities that go with the position. - - An employment activity, whether compensated or not. Short definition comes from http://en.wikipedia.org/wiki/Position, and has been modified. @@ -1154,6 +1110,11 @@ Contents + + + 1 + + The thesis degree. @@ -1167,8 +1128,8 @@ Contents - An organizational unit (as opposed to the physical facility) that performs research, provides services, or processes materials + @@ -1176,6 +1137,18 @@ Contents + + + + + + + + + + + + Note: Bibo:editor is used as the inverse of core:editorOf. Public Description for bibo:editor was obtained from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . @@ -1216,6 +1189,16 @@ Contents 2009-04-30 http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=es#ancor + + + 1 + + + + + + + @@ -1228,10 +1211,10 @@ Contents - + - - + 1 + @@ -1244,10 +1227,15 @@ Contents A role of serving as an educator - + - - + + + + + + + @@ -1266,17 +1254,22 @@ Contents US Patent Data; US Job Data A named collection of data, usually containing only one type of data - + 1 - + Computer program and its related documentation; directs the operation of a computer - + + + + + + @@ -1291,9 +1284,14 @@ Contents Definiton from Bibo here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html - + - + + + + + + @@ -1308,6 +1306,11 @@ Contents A date and/or time + + + 1 + + @@ -1315,6 +1318,11 @@ Contents + + + + + http://www.fao.org/termportal/contr/es/ @@ -1355,15 +1363,10 @@ Contents 020530902X - - - - - - Member of the International Conference on Complex Systems Organizing Committee + An role of an individual within his or her profession or institution; use outreach provider role for community service or other activities outside the profession. @@ -1371,10 +1374,15 @@ Contents Note that the administering department is not the central research administration office (such as University of Florida DSP or Cornell OSP) -- we didn't see a need to record a relationship to that office because it implicitly manages all grants. Also note that this is the administering organization for the grant at the awardee side. - + - - + 1 + + + + + + @@ -1394,32 +1402,47 @@ Contents 2010-06-24 FAO terminology + + + + + + + + + + - + - - 1 + 1 + + stable A scholarly academic article, typically published in a journal. - - http://purl.org/ontology/bibo/ + Written by scholars for other scholars, typically published in an academic journal with an abstract and bibliography A specific academic journal article - + - + + + + + + @@ -1431,6 +1454,16 @@ Contents + + + + + + + + 1 + + stable @@ -1438,6 +1471,11 @@ Contents http://purl.org/ontology/bibo/ Digital Object Identifier + + + + + A short description of the resource. @@ -1457,10 +1495,15 @@ Contents http://www.un.org/Depts/Cartographic/french/htmain.htm UN Cartographic Section - + - - + 1 + + + + + + @@ -1476,15 +1519,10 @@ Contents A summary of the resource. stable - - - 1 - - - Role of a person designated by a grantee to direct a project or activity being supported by a grant, and who is accountable to the grantee for the proper conduct of the project or activity. Also known as Program Director or Project Director. + Role of a person to direct a project or activity being supported by an Agreement (for example, a grant), and who is accountable to the grantee for the proper conduct of the project or activity. Also known as Program Director or Project Director. Definition take from here: http://dictionary.reference.com/browse/school. @@ -1506,15 +1544,10 @@ Contents http://www.fao.org/termportal/en/ - + - 1 - - - - - - + + http://www.fao.org/termportal/contr/ar/ @@ -1529,11 +1562,6 @@ Contents http://www.fao.org/termportal/contr/es/ - - - - - @@ -1550,10 +1578,15 @@ Contents - + - - + + + + + + + @@ -1561,12 +1594,17 @@ Contents Bibo has the domain of bibo:issue as the class Issue, but an example on their site uses it with Article, referring to the issue number "4" + + + + 1 + Definition taken from: http://en.wikipedia.org/wiki/University + University of Florida; Washington University in St. Louis - An institution of higher education and research, which grants academic degrees in a variety of subjects, and provides both undergraduate education and postgraduate education. @@ -1581,35 +1619,35 @@ Contents It's anticipated that the subclasses will be used when classifying items. And, all locations can be viewable via this class. Top level of all location classes. - - - 1 - - A document created as a basis for discussion or a very early draft of a formal paper - + - + - - + + + + + + 1 + - + - - + + - + - - + + @@ -1633,6 +1671,11 @@ Contents this number indicates a position in a list + + + + + source: http://en.wikipedia.org/wiki/Issn @@ -1669,7 +1712,7 @@ Contents A periodical of scholarly journal Articles. Contains original scholarly research or review articles by experts in the field Journal of Information Science; IEEE Intelligent System; Scientometrics - + http://purl.org/ontology/bibo/ @@ -1680,29 +1723,19 @@ Contents Contains news articles, opinions, features, advertising, and is usually issued daily or weekly - + - - - - - - 1 - - - - - - + + - + - - + + http://www.fao.org/termportal/contr/es/ @@ -1717,16 +1750,6 @@ Contents FAO terminology. FAOTERM. http://www.fao.org/termportal/en/ http://www.fao.org/termportal/contr/fr/ - - - - - - - - - - @@ -1734,14 +1757,14 @@ Contents The most general classification of an information resource - - + - + - - - + + + + @@ -1751,9 +1774,14 @@ Contents + + + + + - + Wiley Prize in Biomedical Sciences An Award or Honor An Award or Honor @@ -1771,15 +1799,10 @@ Contents - + - - - - - - 1 - + + @@ -1787,14 +1810,14 @@ Contents - + - - + + - + - + @@ -1805,26 +1828,21 @@ Contents An agent that receives a communication document. - - - - - - - - - - Only use if no specific subclasses of core:EventSeries desribe the activity. - Two or more events that occur at different times and are connected to each other. - - A generic class which may include a conference series, a course section, a seminar series, or a workshop series. When possible, use one of these more specific classes. - + + + Only use if no specific subclasses of core:EventSeries desribe the activity. + Two or more events that occur at different times and are connected to each other. + A generic class which may include a conference series, a course section, a seminar series, or a workshop series. When possible, use one of these more specific classes. + + + + @@ -1839,25 +1857,20 @@ Contents - + - 1 - + + - + - - + + - + - - - - - - 1 - + + @@ -1885,19 +1898,19 @@ use one freetextKeyword assertion for each keyword or phrase. - An attestation of qualification, competence, or authority issued to an individual by a third party with a relevant or de facto authority or assumed competence to do so. - - An attestation of qualification, competence, or authority issued to an individual by a third party with a relevant or de facto authority or assumed competence to do so. + + An attestation of qualification, competence, or authority issued to an individual by a third party with a relevant or de facto authority or assumed competence to do so. + An attestation of qualification, competence, or authority issued to an individual by a third party with a relevant or de facto authority or assumed competence to do so. - + - - + + @@ -1906,11 +1919,6 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - - - @@ -1918,33 +1926,23 @@ We would like the range of core:outcome to be the union of Event and Process; an an information resource (typically a publication) supported by (typically via funding) an agreement (such as a grant) - + - - - - - - 1 - - - - - - + + - + Represents educational training that has been received. This connects person to their academic degree through this educational training, but can also be used when the training does not result in a degree. - Currently any abstract name is given to individuals of this class. This could change in the future. + - - + A paper presented at a conference; optionally collected into a Proceedings or a special Journal issue + @@ -1955,9 +1953,9 @@ We would like the range of core:outcome to be the union of Event and Process; an http://purl.org/ontology/bibo/ + Facebook; VIVOweb.org; Flickr A group of Webpages accessible on the Web. - A group of webpages available within a specific parent address or URL on the World Wide Web @@ -1977,12 +1975,12 @@ We would like the range of core:outcome to be the union of Event and Process; an http://www.fao.org/termportal/contr/zh/ + Work consisting of collections of previously published works Short Definition is the Medical Subject Heading (MeSH) definition A document that simultaneously contains other documents. - http://purl.org/ontology/bibo/ stable @@ -1997,41 +1995,21 @@ We would like the range of core:outcome to be the union of Event and Process; an An area of corporate activity organized as an administrative or functional unit. - Definition modified from http://www.thefreedictionary.com/division. It is difficult to tell the difference between a division and a department. + Cardiovascular Medicine (division within medicine) - - - - - - - - - - The Ornithological Newsletter Usually issued periodically, prepared by or for a group or institution to present information to a specific audience, often also made available to the press and public - + 1 - - - - - - - - - - - + @@ -2039,16 +2017,16 @@ We would like the range of core:outcome to be the union of Event and Process; an The bibo:reviewOf public description was found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . As of 26 May 2010, bibo:reviewOf is used with the class Review, but core:reviewIn doesn't seem to be being used. - + - - + + VIVO Outreach Team; VIVO Ontology Team - An informal organization brought together for the purposes of a project or event. + @@ -2060,7 +2038,7 @@ We would like the range of core:outcome to be the union of Event and Process; an - + @@ -2093,8 +2071,8 @@ We would like the range of core:outcome to be the union of Event and Process; an Alchohol Education Center; Center for Arts and Public Policy; Hearing Research Center - A place where a particular activity or service is concentrated. + Short Definition take from http://www.thefreedictionary.com/center. @@ -2120,12 +2098,12 @@ We would like the range of core:outcome to be the union of Event and Process; an + - Short Definition from OCLC Input Standards, EntW A document created to summarize research findings associated with the completion of an academic degree. stable - + http://purl.org/ontology/bibo/ Works created to satisfy the requirements for an academic certification or degree; also called dissertation @@ -2137,10 +2115,10 @@ We would like the range of core:outcome to be the union of Event and Process; an - + - - + 1 + @@ -2148,11 +2126,6 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - 1 - - UN Statistics Division @@ -2166,28 +2139,28 @@ We would like the range of core:outcome to be the union of Event and Process; an - + 1 - + - + - 1 - + + + + + + + A person's, group's or organization's role in an endeavor + Only use if no specific subclasses of core:Role describe the role. + - Only use this broad role class if no subclasses of role describe the item being classified. - - - - - - @@ -2210,6 +2183,11 @@ We would like the range of core:outcome to be the union of Event and Process; an + + + + 1 + @@ -2229,7 +2207,7 @@ We would like the range of core:outcome to be the union of Event and Process; an A structured file of information or a set of logically related data stored and retrieved using computer-based means Short Definition is the Medical Subject Heading (MeSH) definition - + PubMed @@ -2239,13 +2217,8 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - - - - + stable http://purl.org/ontology/bibo/ 2010 International Congress on Autoimmunity; American Libraries Association 2009 @@ -2263,22 +2236,27 @@ We would like the range of core:outcome to be the union of Event and Process; an - A distinct, usually ongoing and specialized unit within a large organization. Definition modified from the definition here: http://dictionary.reference.com/browse/department. It is difficult to tell the difference between and department and a division. + Legal (department within a company); Use for any non-academic department - + - - + + + + + + 1 + + An online article or commentary appearing on a blog - A specific blog posting @@ -2286,18 +2264,13 @@ We would like the range of core:outcome to be the union of Event and Process; an stable Collection of information resources that have a unified identity - http://purl.org/ontology/bibo/ Collection of information resources that have a unified identity. Archives, museums and libraries often acquire collections on specific subjects and from distinguished authors or researchers. Also includes collections of resources bundled into a license. Hill Ornithology Collection; Wiley Interscience Online Books Biochemisty Collection A collection of Documents or Collections + - - - 1 - - The status of a document with respect to its publication. submitted; accepted; in-press; published; invited; refereed. @@ -2314,24 +2287,18 @@ We would like the range of core:outcome to be the union of Event and Process; an Definition obtained here: http://answers.ask.com/Business/Finance/what_is_a_private_company. Examples of private companies found here: http://www.forbes.com/2008/11/03/largest-private-companies-biz-privates08-cx_sr_1103private_land.html - - - - - - B.A. Bachelor of Arts This list may have multiple abbreviations for some degrees. - + + An academic degree at any level, both as reported by individuals for employment and as offered by academic degree programs. - @@ -2349,15 +2316,16 @@ We would like the range of core:outcome to be the union of Event and Process; an A legal document proposing or enacting a law or a group of laws. - + - 1 - + 1 + - + A role of reviewing + Minnesota; Michigan; Indiana; New York; Quebec; Manitoba; Ontario @@ -2366,11 +2334,6 @@ We would like the range of core:outcome to be the union of Event and Process; an One of a number of areas or communities having their own governments and forming a federation under a sovereign government, as in the US. - - - - - http://purl.org/ontology/bibo/ @@ -2386,11 +2349,6 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - 1 - - @@ -2398,7 +2356,7 @@ We would like the range of core:outcome to be the union of Event and Process; an - + phonograph record; tape; CD; DVD; DAT @@ -2433,11 +2391,6 @@ We would like the range of core:outcome to be the union of Event and Process; an http://purl.org/ontology/bibo/ - - - - - FAO terminology @@ -2454,9 +2407,9 @@ We would like the range of core:outcome to be the union of Event and Process; an film; video; Blu-ray http://purl.org/ontology/bibo/ - Audiovisual recording in any format + stable An audio-visual document; film, video, and so forth. @@ -2496,15 +2449,10 @@ We would like the range of core:outcome to be the union of Event and Process; an http://xmlns.com/foaf/spec/#term_lastName. Note from foaf: "The lastName property is provided (alongside firstName) as a mechanism to support legacy data that cannot be easily interpreted in terms of the (otherwise preferred) familyName and givenName properties. The concepts of 'first' and 'last' names do not work well across cultural and linguistic boundaries; however they are widely used in addressbooks and databases." - - - - - - + 1 - + @@ -2517,6 +2465,11 @@ We would like the range of core:outcome to be the union of Event and Process; an + + + + + UN cartographic maps (http://www.un.org/Depts/Cartographic/map/profile/world.pdf) @@ -2536,18 +2489,6 @@ We would like the range of core:outcome to be the union of Event and Process; an stable - - - A certification or a licensure - - - - - - - - - @@ -2556,8 +2497,8 @@ We would like the range of core:outcome to be the union of Event and Process; an + A defined class of organizations that fund Grants. - National Institute of Health (NIH) @@ -2571,28 +2512,28 @@ We would like the range of core:outcome to be the union of Event and Process; an A person or company whose business is the publishing of books, periodicals, engravings, computer software, etc. Elsevier; Harper & Row; Indiana University Press - + - + - - + + + + + + + + + + + + - - - - - - - - 1 - - A student organization is an organization, operated by students at a university, whose membership normally consists only of students. Dancin' Gators @@ -2605,6 +2546,17 @@ We would like the range of core:outcome to be the union of Event and Process; an Afghanistan; Antigua and Barbuda; Cameroon; Iceland; Jamaica; Nigeria; United States of America + + + 1 + + + + + + + + @@ -2613,11 +2565,6 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - - - 2010-06-24 @@ -2638,6 +2585,21 @@ We would like the range of core:outcome to be the union of Event and Process; an an information resource (typically a publication) supported by (typically via funding) an agreement (such as a grant) + + + + + + + + + + + + + + + @@ -2653,6 +2615,11 @@ We would like the range of core:outcome to be the union of Event and Process; an http://info.slis.indiana.edu/~katy/ + + + + + @@ -2671,21 +2638,6 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - 1 - - - - - - - - - - 1 - - @@ -2694,9 +2646,14 @@ We would like the range of core:outcome to be the union of Event and Process; an http://purl.org/ontology/bibo/ stable - + - + + + + + + @@ -2735,20 +2692,10 @@ We would like the range of core:outcome to be the union of Event and Process; an Public Definition source (http://www.answers.com/topic/publisher). - + - 1 - - - - - - - - - - - + + @@ -2757,24 +2704,29 @@ We would like the range of core:outcome to be the union of Event and Process; an Institute for Fundamental Theory + This class will display all the instances in the subclasses below it, as well as any organizations that were added as part of this generic class because there wasn't a specific class available. Only use if no specific subclasses of foaf:organization desribe the organization. - A generic class encompassing several types of organizations. - - - + + A generic class encompassing several types of organizations. - + + Ued to describe an organization related to bibliographic items such as a publishing company, etc. - + - - + 1 + + + + + + http://www.fao.org/termportal/contr/fr/ @@ -2790,10 +2742,10 @@ We would like the range of core:outcome to be the union of Event and Process; an FAO terminology. FAOTERM. http://www.fao.org/termportal/en/ + + - - @@ -2806,6 +2758,11 @@ We would like the range of core:outcome to be the union of Event and Process; an A Person holding an academic employment appointment focused on research rather than teaching; temporary (or for some defined term) + + + + + @@ -2814,25 +2771,20 @@ We would like the range of core:outcome to be the union of Event and Process; an definition modified from: source (http://en.wikipedia.org/wiki/Seating_capacity). 55 - - - - - - - - 1 - - The digital file (or physical equivalent), if available after the conference, vs. the act of attending/presenting: use ConferencePresentation for information about date/time/location/name of the event where the poster was presented + + + + + - - + + An organized series of workshop events, whether repetitions of the same workshop or multiple different workshops. @@ -2845,20 +2797,20 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - - - - + - + 1 + + + + + @@ -2867,24 +2819,24 @@ We would like the range of core:outcome to be the union of Event and Process; an - + + + + Only use if no specific subclasses of event:Event are appropriate. - - - - + + + + Something that happens at a given place and time. - - - - - - + + + This class will also display instances of subclasses under Event, e.g. Philosophy Department Discussion Club; 2009 Racker Lecture; screening of a documentary. In addition to a location in space and time, an event may have any or all the following qualities: actively participating agents, passive factors, work products. Also, it may be in a virtual space or part of a series such as a lecture series. The previous short definition was: "An arbitrary classification of a space/time region, by a cognitive agent." - + @@ -2894,6 +2846,11 @@ The previous short definition was: "An arbitrary classification of a space/time http://www.fao.org/figis/servlet/RefServlet Fisheries Global Information System http://www.fao.org/figis/servlet/RefServlet + + + + + http://www.fao.org/termportal/en/ @@ -2907,10 +2864,10 @@ The previous short definition was: "An arbitrary classification of a space/time http://www.fao.org/termportal/contr/es/ FAO terminology. FAOTERM. http://www.fao.org/termportal/en/ - + - - + + @@ -2924,6 +2881,11 @@ The previous short definition was: "An arbitrary classification of a space/time + + + 1 + + @@ -2950,23 +2912,18 @@ The previous short definition was: "An arbitrary classification of a space/time - + - - - - - - - + + The award bestowed may be represented with the Award class. - + - - + The bestowal of an award, honor, or distinction to a person or person's at a particular time. + @@ -2975,6 +2932,11 @@ The previous short definition was: "An arbitrary classification of a space/time + + + 1 + + Short Definition from the bibo ontology http://purl.org/ontology/bibo/ @@ -2991,6 +2953,16 @@ The previous short definition was: "An arbitrary classification of a space/time + + + + + + + + + + @@ -2998,20 +2970,25 @@ The previous short definition was: "An arbitrary classification of a space/time - Role of co-principal investigator of a grant, who devotes a specified percentage of time and is considered key personnel. + Role of co-principal investigator of an Agreement (for example, a grant), who devotes a specified percentage of time and is considered key personnel. - + - - + 1 + + + + + + - Professor, associate professor and assistant professor are common positions for academic faculty. + Professor; Associate Professor; Assistant Professor Academic position in a university or institution + - @@ -3023,20 +3000,35 @@ The previous short definition was: "An arbitrary classification of a space/time Global Trade Item Number 14 + - The dual relationship of a professor advising a student and the student being advised by a professor, typically including start and end dates - + - - + + - + - - + 1 + + + + + 1 + + + + + + + + + + + @@ -3053,10 +3045,10 @@ The previous short definition was: "An arbitrary classification of a space/time An explicit individual academic term, quarter, or semester rather than the generic fall, spring or summer semester. - + - 1 - + + @@ -3074,16 +3066,16 @@ modern society using the world of Star trek. Los Angeles Times, March An section number - - - - - + + + + + http://www.fao.org/termportal/contr/en/ http://www.fao.org/termportal/contr/es/ @@ -3114,13 +3106,18 @@ modern society using the world of Star trek. Los Angeles Times, March + + + + + - + - - + + @@ -3134,21 +3131,6 @@ modern society using the world of Star trek. Los Angeles Times, March a specific period or duration, defined by (optional) start and end date/times. - - - 1 - - - - - - - - - - - 1 - @@ -3159,23 +3141,28 @@ modern society using the world of Star trek. Los Angeles Times, March A document describing the exclusive right granted by a government to an inventor to manufacture, use, or sell an invention for a certain number of years + http://purl.org/ontology/bibo/ - stable A document describing the exclusive right granted by a government to an inventor to manufacture, use, or sell an invention for a certain number of years. - Short Definition from bibo ontology + Written script for a film production, including dialogue and descriptions of gestures, actions, shooting directions - + - - + + + + + + + @@ -3213,11 +3200,6 @@ modern society using the world of Star trek. Los Angeles Times, March - - - - 1 - We can't yet assume that we will only have a single ORCID id for a person. @@ -3252,6 +3234,11 @@ Examples of a Publisher include a person, an organization, or a service. Typical http://www.fao.org/termportal/contr/zh/ + + + + + @@ -3277,6 +3264,12 @@ Examples of a Publisher include a person, an organization, or a service. Typical A presentation of a series of slides, usually presented in front of an audience with written text and images. stable + + + + + + @@ -3309,10 +3302,25 @@ Examples of a Publisher include a person, an organization, or a service. Typical http://purl.org/ontology/bibo/ - + - - + + + + + + 1 + + + + + + + + + + + http://www.fao.org/termportal/contr/es/ @@ -3327,19 +3335,19 @@ Examples of a Publisher include a person, an organization, or a service. Typical 2010-06-24 - - - 1 - - A distinct, usually specialized educational unit within an educational organization. - - + + Endodontics (department within a College of Dentistry); English (department within a College of Liberal Arts) + + + + 1 + RearcherID is a Thomson Reuters project where researchers have a place to manage and share their professional information. It will allow them to solve author identity issues while simultaneously adding dynamic citation metrics and collaboration networks to your personal profile. Definition source: http://isiwebofknowledge.com/researcherid/ @@ -3347,11 +3355,6 @@ Definition source: http://isiwebofknowledge.com/researcherid/ - - - 1 - - @@ -3380,15 +3383,15 @@ Definition source: http://isiwebofknowledge.com/researcherid/ - - + An intramural or extramural award to support scholarly work, such as UF09179 (VIVO) Short definition is from the Glossary of NIH Terms. - - - + + + + Financial assistance mechanism providing money, property, or both to an eligible entity to carry out an approved project or activity @@ -3424,20 +3427,15 @@ Definition source: http://isiwebofknowledge.com/researcherid/ Information Science; Computer Science; Anthropology + + + + + This namespace - http://purl.org/dc/elements/1.1/ - does not appear to have this element. - - - - - - - - - 2 - @@ -3463,10 +3461,10 @@ Definition source: http://isiwebofknowledge.com/researcherid/2010-06-24 http://www.fao.org/termportal/en/ - + - - + + Universal Product Code @@ -3482,11 +3480,6 @@ Definition source: http://isiwebofknowledge.com/researcherid/ - - - 1 - - @@ -3494,20 +3487,15 @@ Definition source: http://isiwebofknowledge.com/researcherid/Intel Talent Search; poetry contest Not the same as an award or distinction. - + - - - - - - + - + - - + + @@ -3523,11 +3511,6 @@ Definition source: http://isiwebofknowledge.com/researcherid/stable - - - 1 - - @@ -3562,19 +3545,19 @@ Definition source: http://isiwebofknowledge.com/researcherid/ Address has properties for department name, street, city, state or province, postal code, and country. For US specific address, classify using core:US Postal Code. core:Address will display all addresses. + 200 University Avenue West, Waterloo, Ontario, Canada N2L 3G1 A specification of a location. To classify US specific addresses, use core:US Postal Code. - - - + Librarian; Library Systems Analyst; Music Bibliographer It is the common position in libraries. A position held by library and information science professionals, or academic or technical experts, in support of providing information services or materials + http://www.fao.org/termportal/contr/zh/ @@ -3594,31 +3577,37 @@ Definition source: http://isiwebofknowledge.com/researcherid/ Typically a student or a recent graduate undergoing supervised practical training. - + - - + + - - - - - - - - - - - + 1 - + + + + + + + + + + A role of editing + + + + + + + @@ -3641,26 +3630,31 @@ Definition source: http://isiwebofknowledge.com/researcherid/ - + - - + + - + - - + + 1 - + - - + 1 + + + + + + + A collection of individual agents (and may itself play the role of a Agent, ie. something that can perform actions). - A group can also be an organization but need not be; typically used for looser associations of people or organizations acting together in some fashion, not necessarily through formal agreement or on a long-term basis. Added to the VIVO ontology to be able to support informal and perhaps even private groups of people around an idea, funding opportunity, or event. see: http://xmlns.com/foaf/spec/#term_Group @@ -3673,18 +3667,23 @@ see: http://xmlns.com/foaf/spec/#term_Group A chapter of a book. A main division of a book + + + + + + + + 1 + + - Curriculum Steering Committee; PhD Advisory Committee A group of people organized for a specific purpose (e.g., a reporting or advisory role), often with a charge and for a specific duration. There could be many subclasses such as thesis committee or tenure committee, but these may typically be differentiated via the moniker unless distinct properties become important. - - - - - 1 + Short Definition from OCLC Input Standards, EntW @@ -3719,28 +3718,28 @@ see: http://xmlns.com/foaf/spec/#term_Group - + - - - - - - - + + This term is intended to be used with non-literal values as defined in the DCMI Abstract Model (http://dublincore.org/documents/abstract-model/). As of December 2007, the DCMI Usage Board is seeking a way to express this intention with a formal range declaration. + + + 1 + + - + 1320 East 10th Street, Wells Library 021 Bloomington, IN 47405 + + Formal address in US postal address system. - - US postal address follow the format street, apt or office number (optional), city, state, and zipcode. @@ -3750,21 +3749,26 @@ see: http://xmlns.com/foaf/spec/#term_Group - - - 1 - - - - A broad-ranging leader concept, from leading a small temporary committee to head of a large international organization. A leadership role + + + + + + + + + + + 1 + - A role in a grant as a named investigator or key personnel. + A role in an Agreement (for example, a grant) as a named investigator or key personnel. @@ -3775,14 +3779,14 @@ see: http://xmlns.com/foaf/spec/#term_Group A web page is an online document available (at least initially) on the world wide web. A web page is written first and foremost to appear on the web, as distinct from other online resources such as books, manuscripts or audio documents which use the web primarily as a distribution mechanism alongside other more traditional methods such as print. - - - + + Short Definition from the bibo ontology unstable + + A section of a book - http://purl.org/ontology/bibo/ A section of a book. @@ -3798,20 +3802,15 @@ see: http://xmlns.com/foaf/spec/#term_Group - + - - + + - + - - - - - - - + 1 + @@ -3827,11 +3826,6 @@ see: http://xmlns.com/foaf/spec/#term_Group - - - - - radio or newspaper interview @@ -3855,11 +3849,6 @@ see: http://xmlns.com/foaf/spec/#term_Group The Getty Museum A building or place where works of art, scientific specimens, or other objects of permanent value are kept and displayed. - - - 1 - - unstable http://purl.org/ontology/bibo/ @@ -3887,10 +3876,10 @@ see: http://xmlns.com/foaf/spec/#term_Group FAO terminology http://www.fao.org/termportal/contr/fr/ - + - - + 1 + @@ -3902,22 +3891,12 @@ see: http://xmlns.com/foaf/spec/#term_Group - - - - - - - - - - @@ -3930,21 +3909,6 @@ see: http://xmlns.com/foaf/spec/#term_Group - - - - - - - - 1 - - - - - 1 - - @@ -3967,16 +3931,6 @@ see: http://xmlns.com/foaf/spec/#term_Group SDB User Manual - - - - - - - - - - sub-Saharan Africa, North America @@ -3985,6 +3939,11 @@ see: http://xmlns.com/foaf/spec/#term_Group Not sure how to access the "Editor's Comments". But as North America is a continent, it would be placed directly into the continent subclass and viewable through this class along with any other subclass entities. Any region that goes beyond national boundaries and does not fit into any subclass of core:TransnationalRegion. + + + 1 + + @@ -4004,30 +3963,31 @@ see: http://xmlns.com/foaf/spec/#term_Group B.A. A short form for an longer title or name. - + - - + + A person holding a position that is not considered to be an academic appointment. - - - 1 - - - + - + + + + + + + - - + 1 + @@ -4041,10 +4001,10 @@ see: http://xmlns.com/foaf/spec/#term_Group - + - 1 - + + @@ -4079,20 +4039,10 @@ see: http://xmlns.com/foaf/spec/#term_Group - + - - - - - - - - - - - - + + @@ -4100,6 +4050,11 @@ see: http://xmlns.com/foaf/spec/#term_Group + + + + + An agent that is interviewed by another agent. stable @@ -4115,6 +4070,11 @@ see: http://xmlns.com/foaf/spec/#term_Group + + + + + @@ -4122,11 +4082,10 @@ see: http://xmlns.com/foaf/spec/#term_Group - A role of conducting funded or unfunded research, sometimes linked to a grant - Examples of research can be seen at: http://www.ufl.edu/research/products/index.html. Note these may have been funded, but the research doesn't have to be funded. Also, the research may be linked to a grant, but does not need to be. + Examples of research can be seen at: http://www.ufl.edu/research/products/index.html. Note these may have been funded, but the research doesn't have to be funded. Also, the research may be linked to an Agreement (for example, a Grant), but does not need to be. + A role of conducting funded or unfunded research, sometimes linked to an Agreement. - Bacteria-resistant bandage; Termite prevention system; Hurricane resistant houses Relates a document to some transcribed original. @@ -4137,11 +4096,21 @@ see: http://xmlns.com/foaf/spec/#term_Group unstable + + + 1 + + + + + 1 + + @@ -4162,13 +4131,13 @@ see: http://xmlns.com/foaf/spec/#term_Group + + - + An offering through an ongoing program or single request of research support: internships, positions, financial awards or other forms of tangible or intangible support - - - + @@ -4205,6 +4174,11 @@ bibo has the domain of this property set to the union of Collection and Document Residency is a stage of graduate medical training. + + + + + FAO terminology @@ -4218,10 +4192,10 @@ bibo has the domain of this property set to the union of Collection and Document 2010-06-24 - + - - + 1 + FAO terminology @@ -4236,16 +4210,26 @@ bibo has the domain of this property set to the union of Collection and Document http://www.fao.org/termportal/contr/ar/ FAO terminology. FAOTERM. http://www.fao.org/termportal/en/ - + - + + + + 1 + + A role of being a member in a Process or an Organization + + + + + @@ -4254,6 +4238,11 @@ bibo has the domain of this property set to the union of Collection and Document http://purl.org/ontology/bibo/1.2/ http://purl.org/ontology/bibo/ + + + + + @@ -4274,11 +4263,6 @@ bibo has the domain of this property set to the union of Collection and Document - - - - - @@ -4305,6 +4289,11 @@ bibo has the domain of this property set to the union of Collection and Document + + + + + @@ -4323,6 +4312,11 @@ bibo has the domain of this property set to the union of Collection and Document http://www.fao.org/termportal/contr/zh/ http://www.fao.org/termportal/en/ + + + + + @@ -4347,17 +4341,17 @@ bibo has the domain of this property set to the union of Collection and Document A bounded physical representation of a body of information designed with the capacity (and usually intent) to communicate - + + - Short Definition from the bibo ontology - - + stable + - http://purl.org/ontology/bibo/ A document (noun) is a bounded physical representation of body of information designed with the capacity (and usually intent) to communicate. A document may manifest symbolic, diagrammatic or sensory-representational information. + @@ -4365,6 +4359,11 @@ bibo has the domain of this property set to the union of Collection and Document + + + 1 + + @@ -4384,6 +4383,11 @@ bibo has the domain of this property set to the union of Collection and Document http://www.fao.org/termportal/contr/zh/ http://www.fao.org/termportal/contr/ar/ + + + + + @@ -4404,6 +4408,11 @@ bibo has the domain of this property set to the union of Collection and Document + + + + + FAO terminology http://www.fao.org/termportal/contr/ar/ @@ -4433,21 +4442,16 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi An edited book. - + + http://purl.org/ontology/bibo/ + Best American Science Writing 2009 stable An edited collection of stand-alone articles published as a book - - - - - - - - + Use subclasses of core:GeopoliticalEntity subclasses instead of this class if possible. @@ -4456,12 +4460,22 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi Short definition obtained here: http://en.wiktionary.org/wiki/geopolitical_entity. + + + + + + + + + + 100 Caldwell Hall; 114 Martha Van Rensselaer (Rushmore Conference Room) Room that provides a particular service or is used for a particular activity. @@ -4469,11 +4483,6 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi Enter room number of name. - - - 1 - - @@ -4482,41 +4491,46 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi + + + 1 + + - - - - - - - + + + + + + + + + + + + + + - + + + + - - - - - - - - - - - - - - + + + + + + + + - - - - - + @@ -4524,11 +4538,6 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi Medicine - - - - - http://www.fao.org/termportal/en/ http://www.fao.org/termportal/contr/ar/ @@ -4542,20 +4551,25 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi http://www.fao.org/termportal/contr/zh/ - + - - + 1 + + + + + 1 + Examples shows a book has French language version. Public description source: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . - + 1 - + @@ -4564,21 +4578,6 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - - - - - - - - - - - - - - - http://www.fao.org/termportal/contr/fr/ @@ -4593,9 +4592,9 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi http://www.fao.org/termportal/contr/ar/ - College of Arts & Sciences; Ivy Tech Community College + A primary academic unit within a University or a free-standing higher education organization without graduate degree programs. @@ -4604,10 +4603,10 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi This term is intended to be used with non-literal values as defined in the DCMI Abstract Model (http://dublincore.org/documents/abstract-model/). As of December 2007, the DCMI Usage Board is seeking a way to express this intention with a formal range declaration. - + - - + 1 + @@ -4626,36 +4625,31 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi http://data.worldbank.org/indicator/NY.GDP.MKTP.CD + + + + + - + - - + + - - - - - - - - - - - - - - - - + 1 - + + + + + + @@ -4689,25 +4683,30 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi Are we assuming that a PresenterRole is in a Presentation? Or could you have a PresenterRole in, say, a committee? A role of presenting information - + + + + + + + + + + + - - - 1 - - @@ -4715,10 +4714,10 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi + UITS service UITS service is the information technology services provided by Indiana University. SC. - - + A regularly offered service in support of an academic, research, or administrative function (not personal or professional service by an individual) @@ -4731,6 +4730,16 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi + + + + + + + + + + @@ -4741,6 +4750,11 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi + + + + + Cornell Ithaca; Cornell Geneva; Cornell New York City; Cornell Qatar @@ -4754,6 +4768,11 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi + + + + + unstable @@ -4763,22 +4782,37 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi http://purl.org/ontology/bibo/ Short Definition from the bibo ontology - + - - + + + + + + 1 + + + + 1 + + This is done with a restriction on agent. + + + 1 + + Code of Federal Regulations @@ -4789,34 +4823,24 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi A work consisting of texts of rules and regulations related to statutes issued by executive or administrative agencies A collection of statutes. - + - 1 - - - - - 1 - - - - - - - - - - - + + + Used information from this definition: http://dictionary.reference.com/browse/library. A collection of any materials, for study and enjoyment, which has been systematically arranged. - Marston Science Library + + + + + @@ -4826,9 +4850,9 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - + - + @@ -4839,11 +4863,6 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi http://purl.org/ontology/bibo/ - - - 1 - - http://www.fao.org/termportal/contr/ar/ http://www.fao.org/termportal/contr/fr/ @@ -4857,6 +4876,11 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi FAO terminology FAO terminology. FAOTERM. http://www.fao.org/termportal/en/ + + + 1 + + @@ -4875,38 +4899,23 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi Public Description for bibo:distributor taken from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . - + - 1 - + + - + - - - - - - + - - - - - - - - 1 - - full email address @@ -4917,21 +4926,22 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi We would like the range of core:outcome to be the union of Event and Process; and that same union to be the range for core:outcomeOf, but we cannot currently express this with the editor. - + - - + 1 + - Used to describe any "agent" related to bibliographic items. Such agents can be persons, organizations or groups of any kind. - - - - - see: http://xmlns.com/foaf/spec/#term_Agent - - Agents are things that do stuff + + + + see: http://xmlns.com/foaf/spec/#term_Agent + + + + + Used to describe any "agent" related to bibliographic items. Such agents can be persons, organizations or groups of any kind. @@ -4939,10 +4949,10 @@ We would like the range of core:outcome to be the union of Event and Process; an Chicago; New York; Bloomington; Gainesville - + - - + + @@ -4951,15 +4961,10 @@ We would like the range of core:outcome to be the union of Event and Process; an - + - - - - - - 1 - + + @@ -4967,26 +4972,6 @@ We would like the range of core:outcome to be the union of Event and Process; an For data ingest from authoritative sources to record the actual way a person was listed, as potentially valuable information for provenance and person disambiguation. Represents one person's information from one source at one particular time. For data ingest from authoritative sources to record the actual way a person was listed, as potentially valuable information for provenance and person disambiguation. - - - 1 - - - - - 1 - - - - - - - - - - - - @@ -5009,14 +4994,19 @@ We would like the range of core:outcome to be the union of Event and Process; an http://aims.fao.org/website/Search-AGROVOC/sub http://aims.fao.org/website/Search-AGROVOC/sub + + + 1 + + Used to link a bibliographic item to one of its contributor: can be an author, an editor, a publisher, etc. - + - - + + @@ -5024,15 +5014,10 @@ We would like the range of core:outcome to be the union of Event and Process; an - + - 1 - - - - - 1 - + + 1 @@ -5045,26 +5030,11 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - 1 - - Any organization (likely also asserted as another class of Organization) with a primary, ongoing research function, not just through occasional roles - - - 1 - - - - - - - @@ -5088,6 +5058,11 @@ We would like the range of core:outcome to be the union of Event and Process; an + + + + + http://www.fao.org/figis/servlet/RefServlet http://www.fao.org/figis/servlet/RefServlet @@ -5100,9 +5075,14 @@ We would like the range of core:outcome to be the union of Event and Process; an + + + + + + - Medical Subject Heading (MeSH) definition of Technical Report: Work consisting of a formal report giving details of the investigation and results of a medical or other scientific problem. When issued by a government agency or comparable official body, its contents may be classified, unclassified, or declassified with regard to security clearance. This publication type may also cover a scientific paper or article that records the current state or current position of scientific research and development. If so labeled by the editor or publisher, this publication type may be properly used for journal articles. A document describing an account or statement describing in detail an event, situation, or the like, usually as the result of observation, inquiry, etc.. http://purl.org/ontology/bibo/ @@ -5110,11 +5090,6 @@ We would like the range of core:outcome to be the union of Event and Process; an stable - - - - - @@ -5133,10 +5108,10 @@ We would like the range of core:outcome to be the union of Event and Process; an http://www.fao.org/termportal/contr/es/ FAO terminology - + - - + 1 + 2010-06-24 @@ -5151,10 +5126,10 @@ We would like the range of core:outcome to be the union of Event and Process; an http://www.fao.org/termportal/contr/fr/ - + - 1 - + + @@ -5163,55 +5138,60 @@ We would like the range of core:outcome to be the union of Event and Process; an A series of actions, changes, or functions bringing about a result - - + + - + - + + + When placing VIVO core in the Basic Formal Ontology (BFO) hierarchy, this is a subclass of BFO process which is defined as: "A processual entity that is a maximally connected spatiotemporal whole and has bona fide beginnings and endings corresponding to real discontinuities." - - - + - - + + - + + + + + + - - - - - - + - - + + - + - - + + + + + + + @@ -5219,28 +5199,38 @@ We would like the range of core:outcome to be the union of Event and Process; an A retired professor who has retained their rank, title and privileges. + + + + + + + + + + For individual, separate conferences, use conference instead. core:ConferenceSeries and core:SeminarSeries are very similar. An organized series of a meeting for consultation or discussion. + + + + + A person registered in an undergraduate program leading to a bachelor's degree or an undergraduate diploma or certificate. - - - - - An excerpted collection of words @@ -5250,14 +5240,24 @@ We would like the range of core:outcome to be the union of Event and Process; an http://purl.org/ontology/bibo/ Short Definition from the bibo ontology + + + + + + + + 1 + + A position involving academic work but without faculty status Researcher; Academic Extension Associate; Postdoctoral Associate + - + Those positions are held by people who do academic work but do not have faculty positions in universities or institutes. - @@ -5270,22 +5270,12 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - 1 - - - - - 1 - - The example is one outreach role required by US space agency NASA, which is related with one project in NASA. Name of the outreach role should be put here. @@ -5293,25 +5283,25 @@ We would like the range of core:outcome to be the union of Event and Process; an An outreach or community service role directed outside a person's primary profession and institution Communicating Astronomy to the Public - + - 1 - - - - - + - + - - + 1 + + + + + + - stable - + + A loose, thematic, collection of Documents, often Books. A thematic collection of documents, usually books, issued at regular or irregular intervals @@ -5325,15 +5315,15 @@ We would like the range of core:outcome to be the union of Event and Process; an - + - - + 1 + - + - - + + Definition take from: http://dictionary.reference.com/browse/foundation. @@ -5342,6 +5332,11 @@ We would like the range of core:outcome to be the union of Event and Process; an The Ford Foundation + + + + + http://purl.org/ontology/bibo/ @@ -5351,6 +5346,12 @@ We would like the range of core:outcome to be the union of Event and Process; an A legal decision on appeal that takes action on a case (affirming it, reversing it, etc.). + + + + + + http://purl.org/ontology/bibo/ @@ -5359,6 +5360,11 @@ We would like the range of core:outcome to be the union of Event and Process; an CODEN became particularly common in the scientific community as a citation system for periodicals cited in technical- as well in chemistry-related publications and as a search tool in many bibliographic catalogues. Definition and description came from Wikipedia here: http://en.wikipedia.org/wiki/CODEN + + + + + This is done with a restriction on agent. @@ -5371,30 +5377,30 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik - + - - + + - + - - + + - + - - + + The showing of an object or a collection of objects, in an organized manner. - + 1 - + @@ -5404,19 +5410,14 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik http://www.fao.org/figis/servlet/RefServlet Fisheries Global Information System http://www.fao.org/figis/servlet/RefServlet - + - - - - - - 1 - + + - + Short Definition modified from the one found here: http://www.thefreedictionary.com/county. Alachua; Baker; Bradford; Kenora; Ottawa; Waterloo @@ -5424,14 +5425,9 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik - - A document confirming certain characteristics of a person or organization, usually provided by some form of external review, education, or assessment. A document confirming certain characteristics of a person or organization, usually provided by some form of external review, education, or assessment. - - - - - + A document confirming certain characteristics of a person or organization, usually provided by some form of external review, education, or assessment. + @@ -5439,6 +5435,11 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik + + + + + Short Definition from bibo ontology http://purl.org/ontology/bibo/ @@ -5448,10 +5449,10 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik - + - - 1 + 1 + @@ -5462,37 +5463,42 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik - - - - - - - + + Short Definition from the bibo ontology A distinct part of a larger document or collected document - http://purl.org/ontology/bibo/ a distinct part of a larger document or collected document. + unstable - - - + + + Short Definition copied from bibo ontology - http://purl.org/ontology/bibo/ + + A written or printed work of fiction or nonfiction, usually on sheets of paper fastened or bound together within covers. - A written or printed work of fiction or nonfiction, usually on sheets of paper fastened or bound together within covers stable + + + + + + + + + + @@ -5500,27 +5506,37 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik + + + + + A laboratory that exists primarily to conduct research vs. to provide services - + - - + 1 + - + + - An endeavor, frequently collaborative, that occurs over a finite period of time and is intended to achieve a particular aim. - + + An endeavor, frequently collaborative, that occurs over a finite period of time and is intended to achieve a particular aim. - + + + + + @@ -5532,15 +5548,10 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik - + - - - - - - - + + @@ -5571,15 +5582,30 @@ See also core:localAwardId. Note: Bibo:editor is used as the inverse of core:editorOf. Public Description for bibo:editor was obtained from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . + + + 1 + + + + + + + + + + 1 + + A postdoctoral training appointment (job) - + - - + + @@ -5597,27 +5623,32 @@ See also core:localAwardId. - - - 1 - - + + + + + - + - - + + + + + + + http://www.fao.org/termportal/contr/zh/ @@ -5644,6 +5675,16 @@ See also core:localAwardId. + + + 1 + + + + + + + @@ -5652,6 +5693,11 @@ See also core:localAwardId. + + + + + The name defining a special edition of a document. Normally its a literal value composed of a version number and words. @@ -5659,11 +5705,6 @@ See also core:localAwardId. http://purl.org/ontology/bibo/ - - - - - FAO terminology. FAOTERM. http://www.fao.org/termportal/en/ http://www.fao.org/termportal/contr/zh/ @@ -5677,10 +5718,15 @@ See also core:localAwardId. http://www.fao.org/termportal/en/ 2010-06-24 - + - - + + + + + + + @@ -5691,6 +5737,16 @@ See also core:localAwardId. + + + + + + + + 1 + + 2010-04-01 UN Statistics Division http://unstats.un.org/unsd/methods/m49/m49alpha.htm @@ -5701,6 +5757,11 @@ See also core:localAwardId. http://unstats.un.org/unsd/methods/m49/m49alpha.htm http://unstats.un.org/unsd/methods/m49/m49alpha.htm + + + + + paraphrased editorial note from the bibo ontology: We are not defining, using an enumeration, the range of the bibo:status to be a defined list of bibo:DocumentStatus. This is because we want people to be able to define new statuses if needed; and creating such an enumeration would prevent this. @@ -5709,11 +5770,11 @@ See also core:localAwardId. A list of items in a collection; an ordered compilation of item descriptions and sufficient information to afford access to them - + + NLM Catalog - Short Definition is the Medical Subject Heading (MeSH) definition diff --git a/productMods/WEB-INF/lib/oim.vivo.scimapcore.jar b/productMods/WEB-INF/lib/oim.vivo.scimapcore.jar new file mode 100644 index 00000000..019a1bb3 Binary files /dev/null and b/productMods/WEB-INF/lib/oim.vivo.scimapcore.jar differ diff --git a/productMods/WEB-INF/ontologies/user/vivo-core-1.2-annotations.rdf b/productMods/WEB-INF/ontologies/user/vivo-core-1.2-annotations.rdf index ff765d74..48644d6c 100644 --- a/productMods/WEB-INF/ontologies/user/vivo-core-1.2-annotations.rdf +++ b/productMods/WEB-INF/ontologies/user/vivo-core-1.2-annotations.rdf @@ -57,12 +57,12 @@ + false 5 date/time value 5 dateTimeValueForm.jsp - true true @@ -232,6 +232,7 @@ 4 4 Date/Time Interval + true Non-Academic Position @@ -239,6 +240,7 @@ -1 -1 + true @@ -256,9 +258,9 @@ Licensure + 5 5 - @@ -363,11 +365,12 @@ Screenplay - License - 5 5 - + License + + 5 + @@ -537,6 +540,15 @@ Unique identifier for a Report (a type of information resource). report identifier + + true + + 5 + + + 2 + has editor role + 5 @@ -628,14 +640,6 @@ 5 has part - - - - - -1 - -1 - Non-Faculty Academic - 5 @@ -646,6 +650,14 @@ true true + + + + + -1 + -1 + Non-Faculty Academic + -1 Excerpt @@ -991,6 +1003,7 @@ Librarian Position -1 + true @@ -1021,6 +1034,7 @@ -1 -1 Attendee Role + true @@ -1054,6 +1068,23 @@ geographic location of nearestGeographicLocationFor + + 2 + true + true + 5 + for information resource + + + + + + Editor Role + 2 + 2 + + + @@ -1105,6 +1136,7 @@ + true -1 Authorship @@ -1326,18 +1358,12 @@ true + -1 - -1 - -1 Leader Role - - - 1 - 1 - most specific type - - + -1 + true nameOfficialRU @@ -1381,6 +1407,7 @@ -1 -1 Investigator Role + true @@ -1416,10 +1443,10 @@ 50 - Certification - 2 2 + Certification + 2 @@ -1455,6 +1482,7 @@ -1 -1 Clinical Role + true true @@ -1516,6 +1544,7 @@ -1 + true -1 @@ -1554,6 +1583,16 @@ + + 2 + + eligible for + 5 + + + true + true + principal investigator role of @@ -1637,10 +1676,10 @@ true 6 - true 5 expiration date + false @@ -1853,6 +1892,7 @@ + true -1 Faculty Administrative Position @@ -1898,6 +1938,7 @@ Position + true -1 -1 @@ -1924,9 +1965,9 @@ Non-Academic - governing authority for 5 8 + governing authority for degree @@ -1955,6 +1996,19 @@ local award id + + reviewer role of + 5 + 2 + + + 2 + 2 + + Issued Credential + + true + This relates the information resource for which a person has managerial and sometimes policy-making responsibility to the person. true @@ -2084,12 +2138,22 @@ true - true 99 1 + false end + + interviewee + + true + interviewee + + true + + An agent that is interviewed by another agent. + true true @@ -2101,16 +2165,6 @@ 5 - - interviewee - - true - interviewee - - true - - An agent that is interviewed by another agent. - presentationActivity true @@ -2131,6 +2185,7 @@ -1 -1 Teacher Role + true research overview @@ -2142,6 +2197,7 @@ Researcher Role + true -1 @@ -2209,7 +2265,7 @@ 1 the start of a time interval. - true + false 80 start true @@ -2223,6 +2279,14 @@ -1 group + + + + -1 + Research Opportunity + + -1 + false has author entry @@ -2238,14 +2302,6 @@ - - - - -1 - Research Opportunity - - -1 - 10 true @@ -2311,6 +2367,7 @@ -1 -1 Date/Time Value + true 5 @@ -2366,11 +2423,12 @@ 1 - - - -1 -1 + + -1 Service Provider Role + true + true @@ -2388,6 +2446,7 @@ -1 -1 Member Role + true bibo @@ -2471,13 +2530,13 @@ 1 - Published US Classification Class/Subclass (CCL) code - The original and cross-reference US Classification(s) to which the published application was assigned at the time of publication -- includes both primary and secondary class information. - 5 - 1 + The original and cross-reference US Classification(s) to which the published application was assigned at the time of publication -- includes both primary and secondary class information. + 1 + 5 + Published US Classification Class/Subclass (CCL) code hasNationality @@ -2485,10 +2544,10 @@ + governing authority 8 true - has governing authority true @@ -2753,6 +2812,7 @@ -1 -1 Principal Investigator Role + true @@ -2901,10 +2961,10 @@ - true true 4 + false date issued 5 The date the patent was issued. @@ -3046,6 +3106,7 @@ -1 + true Presenter Role @@ -3375,11 +3436,11 @@ identifier - Credential 5 5 + Credential reviewOf @@ -3750,6 +3811,7 @@ Role -1 -1 + true @@ -4078,10 +4140,11 @@ -1 - - -1 -1 + + true + Reviewer Role @@ -4303,20 +4366,13 @@ - - - - Qualification - 2 - - 2 - -1 -1 Non-Faculty Academic Position + true @@ -4361,9 +4417,9 @@ true 4 date filed - true desc 5 + false The date the patent was filed. @@ -4379,6 +4435,7 @@ -1 + true -1 Outreach Provider Role @@ -4436,6 +4493,11 @@ -1 + + editor role of + 5 + 2 + @@ -4455,6 +4517,16 @@ linkShortView.jsp + + 5 + true + has reviewer role + + + true + + 2 + @@ -4559,11 +4631,12 @@ -1 + + Certificate 5 5 - @@ -4702,9 +4775,12 @@ Postdoctoral Training + 6 + credential of 5 - 6 + + true true @@ -4811,6 +4887,7 @@ -1 -1 Postdoctoral Position + true This relates an active agent to an event. @@ -4873,6 +4950,11 @@ landAreaNotes + + linked role + 5 + 2 + @@ -4981,6 +5063,7 @@ + true -1 @@ -5026,15 +5109,16 @@ -1 -1 Co-Principal Investigator Role + true - license number - license number - 4 - 1 + license number + 1 + 4 + license number core @@ -5043,6 +5127,7 @@ -1 Faculty Position + true -1 @@ -5070,6 +5155,7 @@ + true -1 diff --git a/productMods/WEB-INF/submodels/scires-1.2.owl b/productMods/WEB-INF/submodels/scires-1.2.owl index 1a58721c..31e78db3 100644 --- a/productMods/WEB-INF/submodels/scires-1.2.owl +++ b/productMods/WEB-INF/submodels/scires-1.2.owl @@ -27,17 +27,17 @@ number of human participants in the study (trial). + + + + + A protocol is a plan specification which has sufficient level of detail and quantitative information to communicate it between domain experts, so that different domain experts will reliably be able to independently reproduce the process. A plan specification that allows different domain experts to reliably and independently reproduce a process. - - - - - Phase 4 Clinical Trial @@ -82,17 +82,17 @@ + + + + + A service that produces a physical object or data, such as a custom micro-array chip, a made to order antibody, or a behavioral dataset A service that produces a physical object or data. - - - - - diff --git a/productMods/WEB-INF/submodels/vitro-0.7.owl b/productMods/WEB-INF/submodels/vitro-0.7.owl index 79ce94f0..457687a0 100644 --- a/productMods/WEB-INF/submodels/vitro-0.7.owl +++ b/productMods/WEB-INF/submodels/vitro-0.7.owl @@ -281,5 +281,8 @@ xmlns:vitro="&vitro;" + + + diff --git a/productMods/WEB-INF/submodels/vivo-core-1.2.owl b/productMods/WEB-INF/submodels/vivo-core-1.2.owl index c6a7a6b8..3f5afc01 100644 --- a/productMods/WEB-INF/submodels/vivo-core-1.2.owl +++ b/productMods/WEB-INF/submodels/vivo-core-1.2.owl @@ -19,17 +19,27 @@ xmlns:dcterms="http://purl.org/dc/terms/" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" > - - - - - A PMCID is a unique PubMed Central reference number, which is assigned to each full-text record made available A PMCID is a unique PubMed Central reference number, which is assigned to each full-text record made available in PubMed Central. The PMCID is issued shortly after the PI or author approves the PubMed Central formatted web version of the submission. + + + + + + + + 1 + + + + + + + http://purl.org/ontology/bibo/ Short Definition from bibo ontology @@ -54,6 +64,11 @@ + + + + + @@ -70,6 +85,16 @@ + + + + + + + + + + unstable @@ -85,40 +110,20 @@ - - - - - Use only if no specific subclasses of core:Student describe the person. A person who is enrolled in an educational institution. - - - - - - - - - - - + UN Cartographic Section UN Cartographic Section - + - - - - - 1 - + @@ -126,6 +131,26 @@ + + + + + + + + 1 + + + + + + + + + + + + @@ -141,25 +166,20 @@ Accounting & Research Services Assistant; Director of Information Technology Staff, support, and other non-academic positions. - + + A position classified as professional, staff, support, or any other non-academic role - - - - - - - A granted license, which gives a 'permission to practice.' - A granted license, which gives a 'permission to practice.' Such licenses are usually issued in order to regulate some activity that is deemed to be dangerous or a threat to the person or the public or which involves a high level of specialized skill. See also core:License. + + http://purl.org/ontology/bibo/ @@ -169,29 +189,24 @@ Serial Item and Contribution Identifier + + + + + - - - - - - + - - - - - - - + 1 + Definition take from: http://en.wikipedia.org/wiki/Government_agency. @@ -207,14 +222,19 @@ Public description modified from the information on this page: http://www.w3.org/TR/2005/WD-swbp-skos-core-guide-20050510/#sechierarchy . - + - - + + + + + + + @@ -241,41 +261,51 @@ + + + 1 + + Definition take from: http://xmlns.com/foaf/spec/#term_based_near . foaf indicates that the status of this term is "unstable". "The based_near relationship relates two "spatial things" (anything that can be somewhere), the latter typically described using the geo:lat / geo:long geo-positioning vocabulary (http://www.w3.org/2003/01/geo/wgs84_pos#). This allows us to say describe the typical latitute and longitude of, say, a Person (people are spatial things - they can be places) without implying that a precise location has been given." Used to link an agent, related to bibliographic things, to a place where it is based near: can be a city, a monument, a building, etc. - - - - - - Official or legal permission to do something + Official or legal permission to do something Licenses are usually issued in order to regulate some activity that is deemed to be dangerous or a threat to the person or the public or which involves a high level of specialized skill. See also core:Licensure. + + + + + Note that the administering department is not the central research administration office (such as University of Florida DSP or Cornell OSP) -- we didn't see a need to record a relationship to that office because it implicitly manages all grants. Also note that this is the administering organization for the grant at the awardee side. - - The most general classification of a person - - - - - + + The most general classification of a person + + + + + + + + + + http://purl.org/ontology/bibo/ @@ -284,25 +314,20 @@ Starting page number within a continuous page range. stable - - - - - - - - - - - + - - + + + + + + + @@ -310,20 +335,25 @@ - + - - + 1 + - + - 1 - + 1 + - + - - + + + + + + 1 + @@ -333,10 +363,15 @@ http://www.fao.org/figis/servlet/RefServlet Fisheries Global Information System http://www.fao.org/figis/servlet/RefServlet - + - - + + + + + + + @@ -347,11 +382,6 @@ Works prepared by hand including handwritten or typescript drafts of pre-publication papers or works not otherwise reproduced in multiple copies http://purl.org/ontology/bibo/ - - - 1 - - @@ -368,10 +398,10 @@ - + - - + + Smaller administrative division into which a country may be divided. @@ -381,18 +411,9 @@ Short definition was partially taken from http://en.wikipedia.org/wiki/Subnational_entity. - - - 1 - - - - - - - + @@ -402,10 +423,10 @@ - + @@ -415,33 +436,32 @@ + - + + - - + - - - - - + + + - - + + - + @@ -487,16 +507,6 @@ http://www.fao.org/termportal/contr/es/ http://www.fao.org/termportal/contr/ar/ - - - 1 - - - - - - - @@ -511,31 +521,21 @@ - - - - - A retired faculty member who has retained their rank, title and privileges. - + - - + 1 + Audiovisual recording in video format - - - - - Short Definition from the bibo ontology @@ -546,19 +546,14 @@ something that is printed or published and distributed, esp. a given number of a periodical - - + - - - - - + - + In VIVO, a collection point for metadata regarding a digital file that has been uploaded and stored in the VIVO system. Includes metadata such as the filename, mime type, link to a thumbnail image (for image files), etc. A File instance refers to its FileByteStream through the "downloadLocation" property. A digital file on a computer file system @@ -586,11 +581,6 @@ - - - 1 - - UN Statistics Division http://unstats.un.org/unsd/methods/m49/m49alpha.htm @@ -601,15 +591,10 @@ UN Statistics Division - + - - - - - - - + + http://faostat.fao.org @@ -621,15 +606,10 @@ http://faostat.fao.org/default.aspx?lang=es FAOSTAT http://faostat.fao.org - + - - - - - - - + + @@ -647,11 +627,6 @@ A short written piece focused on an event or announcement of note, having a defined publication time and of less enduring interest than a news feature. - - - 1 - - @@ -680,18 +655,13 @@ FAO terminology. FAOTERM. http://www.fao.org/termportal/en/ http://www.iso.org/iso/fr/country_codes/iso_3166_code_lists.htm - - - 1 - - - Authorship of journal articles, books and other original works is a means by which academics communicate the results of their scholarly work, establish priority for their discoveries, and build their reputation among their peers. This class allows for linking an author to a publication while indicating information about that author's authorship. + Contains the authors name, their rank in the publication, and whether or not they are a corresponding author on the publication. Currently any abstract name is given to members of this class. This could change in the future. @@ -703,21 +673,16 @@ This class allows for linking an author to a publication while indicating inform Bibo Definition: A seminar, discussion group, or the like, that emphasizes exchange of ideas and the demonstration and application of techniques, skills, etc. - - - - - - - - 1 - - - + + + + + + @@ -736,11 +701,11 @@ This class allows for linking an author to a publication while indicating inform stable - Committee on Institutional Cooperation (CIC); The Five Colleges of Ohio Independent organizations formally working together toward a common goal, under an expressed agreement - + + @@ -750,20 +715,20 @@ This class allows for linking an author to a publication while indicating inform - - - + + + A group of related documents issued at regular intervals. http://purl.org/ontology/bibo/ stable - + - + - - + + @@ -800,28 +765,20 @@ This class allows for linking an author to a publication while indicating inform Short Definition take from http://en.wiktionary.org/wiki/continent. - - - - - - + 1 - - - - - 1 - + - - + + + + http://www.fao.org/termportal/contr/zh/ @@ -856,7 +813,7 @@ This class allows for linking an author to a publication while indicating inform - + @@ -868,10 +825,10 @@ This class allows for linking an author to a publication while indicating inform - - - An issued certificate see also core:Certificate + An issued certificate + + @@ -937,11 +894,6 @@ This class allows for linking an author to a publication while indicating inform Contents [hide] - - - 1 - - A unit devoted primarily to extension activities, whether for outreach or research. @@ -953,6 +905,10 @@ Contents Public Description for bibo:distributor taken from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . + + + + FAO terminology @@ -966,18 +922,18 @@ Contents http://www.fao.org/termportal/contr/en/ + + + + + - A negotiated arrangement between two or more parties regarding a course of action - - - - - - - - + + + + @@ -1010,17 +966,22 @@ Contents A gathering of people for a defined purpose, not necessarily public or announced - - - - - + + + 1 + + + + + + 2 + Library of Congress Blog @@ -1028,11 +989,6 @@ Contents Regularly updated online journal or newsletter by one or more writers, called bloggers, containing articles and commentary of interest to the blogger - - - 1 - - @@ -1073,6 +1029,11 @@ Contents + + + + + @@ -1083,11 +1044,6 @@ Contents Either city or town - a thickly populated area having fixed boundaries and certain local powers of government. - - - 1 - - @@ -1096,22 +1052,22 @@ Contents - That is a position held by an academic faculty member who works for administration. - + + Associate Dean An academic administrative position (associate dean, etc.) as distinct from a professional administrative position (non-academic) + server; Bruker Vector-33 FT-IR - + A network server is one example. Medical schools and research laboratories can list professional equipment, such as microscopes. - A physical object provided for specific purpose, task or occupation. - + @@ -1124,22 +1080,22 @@ Contents - http://purl.org/ontology/bibo/ A specific journal article + http://purl.org/ontology/bibo/ - + A written composition in prose, usually nonfiction, on a specific topic, forming an independent part of a periodical or book Short Definition modified from the bibo ontology. A written composition in prose, usually nonfiction, on a specific topic, forming an independent part of a book or other publication, as a newspaper or magazine. - stable + + + Director of Admissions and Placement; Associate University Librarian Particular position in an organization, commonly identified by job title, and normally associated with a job description that details the tasks and responsibilities that go with the position. - - An employment activity, whether compensated or not. Short definition comes from http://en.wikipedia.org/wiki/Position, and has been modified. @@ -1154,6 +1110,11 @@ Contents + + + 1 + + The thesis degree. @@ -1167,8 +1128,8 @@ Contents - An organizational unit (as opposed to the physical facility) that performs research, provides services, or processes materials + @@ -1176,6 +1137,18 @@ Contents + + + + + + + + + + + + Note: Bibo:editor is used as the inverse of core:editorOf. Public Description for bibo:editor was obtained from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . @@ -1216,6 +1189,16 @@ Contents 2009-04-30 http://faostat.fao.org/DesktopDefault.aspx?PageID=377&lang=es#ancor + + + 1 + + + + + + + @@ -1228,10 +1211,10 @@ Contents - + - - + 1 + @@ -1244,10 +1227,15 @@ Contents A role of serving as an educator - + - - + + + + + + + @@ -1266,17 +1254,22 @@ Contents US Patent Data; US Job Data A named collection of data, usually containing only one type of data - + 1 - + Computer program and its related documentation; directs the operation of a computer - + + + + + + @@ -1291,9 +1284,14 @@ Contents Definiton from Bibo here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html - + - + + + + + + @@ -1308,6 +1306,11 @@ Contents A date and/or time + + + 1 + + @@ -1315,6 +1318,11 @@ Contents + + + + + http://www.fao.org/termportal/contr/es/ @@ -1355,15 +1363,10 @@ Contents 020530902X - - - - - - Member of the International Conference on Complex Systems Organizing Committee + An role of an individual within his or her profession or institution; use outreach provider role for community service or other activities outside the profession. @@ -1371,10 +1374,15 @@ Contents Note that the administering department is not the central research administration office (such as University of Florida DSP or Cornell OSP) -- we didn't see a need to record a relationship to that office because it implicitly manages all grants. Also note that this is the administering organization for the grant at the awardee side. - + - - + 1 + + + + + + @@ -1394,32 +1402,47 @@ Contents 2010-06-24 FAO terminology + + + + + + + + + + - + - - 1 + 1 + + stable A scholarly academic article, typically published in a journal. - - http://purl.org/ontology/bibo/ + Written by scholars for other scholars, typically published in an academic journal with an abstract and bibliography A specific academic journal article - + - + + + + + + @@ -1431,6 +1454,16 @@ Contents + + + + + + + + 1 + + stable @@ -1438,6 +1471,11 @@ Contents http://purl.org/ontology/bibo/ Digital Object Identifier + + + + + A short description of the resource. @@ -1457,10 +1495,15 @@ Contents http://www.un.org/Depts/Cartographic/french/htmain.htm UN Cartographic Section - + - - + 1 + + + + + + @@ -1476,15 +1519,10 @@ Contents A summary of the resource. stable - - - 1 - - - Role of a person designated by a grantee to direct a project or activity being supported by a grant, and who is accountable to the grantee for the proper conduct of the project or activity. Also known as Program Director or Project Director. + Role of a person to direct a project or activity being supported by an Agreement (for example, a grant), and who is accountable to the grantee for the proper conduct of the project or activity. Also known as Program Director or Project Director. Definition take from here: http://dictionary.reference.com/browse/school. @@ -1506,15 +1544,10 @@ Contents http://www.fao.org/termportal/en/ - + - 1 - - - - - - + + http://www.fao.org/termportal/contr/ar/ @@ -1529,11 +1562,6 @@ Contents http://www.fao.org/termportal/contr/es/ - - - - - @@ -1550,10 +1578,15 @@ Contents - + - - + + + + + + + @@ -1561,12 +1594,17 @@ Contents Bibo has the domain of bibo:issue as the class Issue, but an example on their site uses it with Article, referring to the issue number "4" + + + + 1 + Definition taken from: http://en.wikipedia.org/wiki/University + University of Florida; Washington University in St. Louis - An institution of higher education and research, which grants academic degrees in a variety of subjects, and provides both undergraduate education and postgraduate education. @@ -1581,35 +1619,35 @@ Contents It's anticipated that the subclasses will be used when classifying items. And, all locations can be viewable via this class. Top level of all location classes. - - - 1 - - A document created as a basis for discussion or a very early draft of a formal paper - + - + - - + + + + + + 1 + - + - - + + - + - - + + @@ -1633,6 +1671,11 @@ Contents this number indicates a position in a list + + + + + source: http://en.wikipedia.org/wiki/Issn @@ -1669,7 +1712,7 @@ Contents A periodical of scholarly journal Articles. Contains original scholarly research or review articles by experts in the field Journal of Information Science; IEEE Intelligent System; Scientometrics - + http://purl.org/ontology/bibo/ @@ -1680,29 +1723,19 @@ Contents Contains news articles, opinions, features, advertising, and is usually issued daily or weekly - + - - - - - - 1 - - - - - - + + - + - - + + http://www.fao.org/termportal/contr/es/ @@ -1717,16 +1750,6 @@ Contents FAO terminology. FAOTERM. http://www.fao.org/termportal/en/ http://www.fao.org/termportal/contr/fr/ - - - - - - - - - - @@ -1734,14 +1757,14 @@ Contents The most general classification of an information resource - - + - + - - - + + + + @@ -1751,9 +1774,14 @@ Contents + + + + + - + Wiley Prize in Biomedical Sciences An Award or Honor An Award or Honor @@ -1771,15 +1799,10 @@ Contents - + - - - - - - 1 - + + @@ -1787,14 +1810,14 @@ Contents - + - - + + - + - + @@ -1805,26 +1828,21 @@ Contents An agent that receives a communication document. - - - - - - - - - - Only use if no specific subclasses of core:EventSeries desribe the activity. - Two or more events that occur at different times and are connected to each other. - - A generic class which may include a conference series, a course section, a seminar series, or a workshop series. When possible, use one of these more specific classes. - + + + Only use if no specific subclasses of core:EventSeries desribe the activity. + Two or more events that occur at different times and are connected to each other. + A generic class which may include a conference series, a course section, a seminar series, or a workshop series. When possible, use one of these more specific classes. + + + + @@ -1839,25 +1857,20 @@ Contents - + - 1 - + + - + - - + + - + - - - - - - 1 - + + @@ -1885,19 +1898,19 @@ use one freetextKeyword assertion for each keyword or phrase. - An attestation of qualification, competence, or authority issued to an individual by a third party with a relevant or de facto authority or assumed competence to do so. - - An attestation of qualification, competence, or authority issued to an individual by a third party with a relevant or de facto authority or assumed competence to do so. + + An attestation of qualification, competence, or authority issued to an individual by a third party with a relevant or de facto authority or assumed competence to do so. + An attestation of qualification, competence, or authority issued to an individual by a third party with a relevant or de facto authority or assumed competence to do so. - + - - + + @@ -1906,11 +1919,6 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - - - @@ -1918,33 +1926,23 @@ We would like the range of core:outcome to be the union of Event and Process; an an information resource (typically a publication) supported by (typically via funding) an agreement (such as a grant) - + - - - - - - 1 - - - - - - + + - + Represents educational training that has been received. This connects person to their academic degree through this educational training, but can also be used when the training does not result in a degree. - Currently any abstract name is given to individuals of this class. This could change in the future. + - - + A paper presented at a conference; optionally collected into a Proceedings or a special Journal issue + @@ -1955,9 +1953,9 @@ We would like the range of core:outcome to be the union of Event and Process; an http://purl.org/ontology/bibo/ + Facebook; VIVOweb.org; Flickr A group of Webpages accessible on the Web. - A group of webpages available within a specific parent address or URL on the World Wide Web @@ -1977,12 +1975,12 @@ We would like the range of core:outcome to be the union of Event and Process; an http://www.fao.org/termportal/contr/zh/ + Work consisting of collections of previously published works Short Definition is the Medical Subject Heading (MeSH) definition A document that simultaneously contains other documents. - http://purl.org/ontology/bibo/ stable @@ -1997,41 +1995,21 @@ We would like the range of core:outcome to be the union of Event and Process; an An area of corporate activity organized as an administrative or functional unit. - Definition modified from http://www.thefreedictionary.com/division. It is difficult to tell the difference between a division and a department. + Cardiovascular Medicine (division within medicine) - - - - - - - - - - The Ornithological Newsletter Usually issued periodically, prepared by or for a group or institution to present information to a specific audience, often also made available to the press and public - + 1 - - - - - - - - - - - + @@ -2039,16 +2017,16 @@ We would like the range of core:outcome to be the union of Event and Process; an The bibo:reviewOf public description was found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . As of 26 May 2010, bibo:reviewOf is used with the class Review, but core:reviewIn doesn't seem to be being used. - + - - + + VIVO Outreach Team; VIVO Ontology Team - An informal organization brought together for the purposes of a project or event. + @@ -2060,7 +2038,7 @@ We would like the range of core:outcome to be the union of Event and Process; an - + @@ -2093,8 +2071,8 @@ We would like the range of core:outcome to be the union of Event and Process; an Alchohol Education Center; Center for Arts and Public Policy; Hearing Research Center - A place where a particular activity or service is concentrated. + Short Definition take from http://www.thefreedictionary.com/center. @@ -2120,12 +2098,12 @@ We would like the range of core:outcome to be the union of Event and Process; an + - Short Definition from OCLC Input Standards, EntW A document created to summarize research findings associated with the completion of an academic degree. stable - + http://purl.org/ontology/bibo/ Works created to satisfy the requirements for an academic certification or degree; also called dissertation @@ -2137,10 +2115,10 @@ We would like the range of core:outcome to be the union of Event and Process; an - + - - + 1 + @@ -2148,11 +2126,6 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - 1 - - UN Statistics Division @@ -2166,28 +2139,28 @@ We would like the range of core:outcome to be the union of Event and Process; an - + 1 - + - + - 1 - + + + + + + + A person's, group's or organization's role in an endeavor + Only use if no specific subclasses of core:Role describe the role. + - Only use this broad role class if no subclasses of role describe the item being classified. - - - - - - @@ -2210,6 +2183,11 @@ We would like the range of core:outcome to be the union of Event and Process; an + + + + 1 + @@ -2229,7 +2207,7 @@ We would like the range of core:outcome to be the union of Event and Process; an A structured file of information or a set of logically related data stored and retrieved using computer-based means Short Definition is the Medical Subject Heading (MeSH) definition - + PubMed @@ -2239,13 +2217,8 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - - - - + stable http://purl.org/ontology/bibo/ 2010 International Congress on Autoimmunity; American Libraries Association 2009 @@ -2263,22 +2236,27 @@ We would like the range of core:outcome to be the union of Event and Process; an - A distinct, usually ongoing and specialized unit within a large organization. Definition modified from the definition here: http://dictionary.reference.com/browse/department. It is difficult to tell the difference between and department and a division. + Legal (department within a company); Use for any non-academic department - + - - + + + + + + 1 + + An online article or commentary appearing on a blog - A specific blog posting @@ -2286,18 +2264,13 @@ We would like the range of core:outcome to be the union of Event and Process; an stable Collection of information resources that have a unified identity - http://purl.org/ontology/bibo/ Collection of information resources that have a unified identity. Archives, museums and libraries often acquire collections on specific subjects and from distinguished authors or researchers. Also includes collections of resources bundled into a license. Hill Ornithology Collection; Wiley Interscience Online Books Biochemisty Collection A collection of Documents or Collections + - - - 1 - - The status of a document with respect to its publication. submitted; accepted; in-press; published; invited; refereed. @@ -2314,24 +2287,18 @@ We would like the range of core:outcome to be the union of Event and Process; an Definition obtained here: http://answers.ask.com/Business/Finance/what_is_a_private_company. Examples of private companies found here: http://www.forbes.com/2008/11/03/largest-private-companies-biz-privates08-cx_sr_1103private_land.html - - - - - - B.A. Bachelor of Arts This list may have multiple abbreviations for some degrees. - + + An academic degree at any level, both as reported by individuals for employment and as offered by academic degree programs. - @@ -2349,15 +2316,16 @@ We would like the range of core:outcome to be the union of Event and Process; an A legal document proposing or enacting a law or a group of laws. - + - 1 - + 1 + - + A role of reviewing + Minnesota; Michigan; Indiana; New York; Quebec; Manitoba; Ontario @@ -2366,11 +2334,6 @@ We would like the range of core:outcome to be the union of Event and Process; an One of a number of areas or communities having their own governments and forming a federation under a sovereign government, as in the US. - - - - - http://purl.org/ontology/bibo/ @@ -2386,11 +2349,6 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - 1 - - @@ -2398,7 +2356,7 @@ We would like the range of core:outcome to be the union of Event and Process; an - + phonograph record; tape; CD; DVD; DAT @@ -2433,11 +2391,6 @@ We would like the range of core:outcome to be the union of Event and Process; an http://purl.org/ontology/bibo/ - - - - - FAO terminology @@ -2454,9 +2407,9 @@ We would like the range of core:outcome to be the union of Event and Process; an film; video; Blu-ray http://purl.org/ontology/bibo/ - Audiovisual recording in any format + stable An audio-visual document; film, video, and so forth. @@ -2496,15 +2449,10 @@ We would like the range of core:outcome to be the union of Event and Process; an http://xmlns.com/foaf/spec/#term_lastName. Note from foaf: "The lastName property is provided (alongside firstName) as a mechanism to support legacy data that cannot be easily interpreted in terms of the (otherwise preferred) familyName and givenName properties. The concepts of 'first' and 'last' names do not work well across cultural and linguistic boundaries; however they are widely used in addressbooks and databases." - - - - - - + 1 - + @@ -2517,6 +2465,11 @@ We would like the range of core:outcome to be the union of Event and Process; an + + + + + UN cartographic maps (http://www.un.org/Depts/Cartographic/map/profile/world.pdf) @@ -2536,18 +2489,6 @@ We would like the range of core:outcome to be the union of Event and Process; an stable - - - A certification or a licensure - - - - - - - - - @@ -2556,8 +2497,8 @@ We would like the range of core:outcome to be the union of Event and Process; an + A defined class of organizations that fund Grants. - National Institute of Health (NIH) @@ -2571,28 +2512,28 @@ We would like the range of core:outcome to be the union of Event and Process; an A person or company whose business is the publishing of books, periodicals, engravings, computer software, etc. Elsevier; Harper & Row; Indiana University Press - + - + - - + + + + + + + + + + + + - - - - - - - - 1 - - A student organization is an organization, operated by students at a university, whose membership normally consists only of students. Dancin' Gators @@ -2605,6 +2546,17 @@ We would like the range of core:outcome to be the union of Event and Process; an Afghanistan; Antigua and Barbuda; Cameroon; Iceland; Jamaica; Nigeria; United States of America + + + 1 + + + + + + + + @@ -2613,11 +2565,6 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - - - 2010-06-24 @@ -2638,6 +2585,21 @@ We would like the range of core:outcome to be the union of Event and Process; an an information resource (typically a publication) supported by (typically via funding) an agreement (such as a grant) + + + + + + + + + + + + + + + @@ -2653,6 +2615,11 @@ We would like the range of core:outcome to be the union of Event and Process; an http://info.slis.indiana.edu/~katy/ + + + + + @@ -2671,21 +2638,6 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - 1 - - - - - - - - - - 1 - - @@ -2694,9 +2646,14 @@ We would like the range of core:outcome to be the union of Event and Process; an http://purl.org/ontology/bibo/ stable - + - + + + + + + @@ -2735,20 +2692,10 @@ We would like the range of core:outcome to be the union of Event and Process; an Public Definition source (http://www.answers.com/topic/publisher). - + - 1 - - - - - - - - - - - + + @@ -2757,24 +2704,29 @@ We would like the range of core:outcome to be the union of Event and Process; an Institute for Fundamental Theory + This class will display all the instances in the subclasses below it, as well as any organizations that were added as part of this generic class because there wasn't a specific class available. Only use if no specific subclasses of foaf:organization desribe the organization. - A generic class encompassing several types of organizations. - - - + + A generic class encompassing several types of organizations. - + + Ued to describe an organization related to bibliographic items such as a publishing company, etc. - + - - + 1 + + + + + + http://www.fao.org/termportal/contr/fr/ @@ -2790,10 +2742,10 @@ We would like the range of core:outcome to be the union of Event and Process; an FAO terminology. FAOTERM. http://www.fao.org/termportal/en/ + + - - @@ -2806,6 +2758,11 @@ We would like the range of core:outcome to be the union of Event and Process; an A Person holding an academic employment appointment focused on research rather than teaching; temporary (or for some defined term) + + + + + @@ -2814,25 +2771,20 @@ We would like the range of core:outcome to be the union of Event and Process; an definition modified from: source (http://en.wikipedia.org/wiki/Seating_capacity). 55 - - - - - - - - 1 - - The digital file (or physical equivalent), if available after the conference, vs. the act of attending/presenting: use ConferencePresentation for information about date/time/location/name of the event where the poster was presented + + + + + - - + + An organized series of workshop events, whether repetitions of the same workshop or multiple different workshops. @@ -2845,20 +2797,20 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - - - - + - + 1 + + + + + @@ -2867,24 +2819,24 @@ We would like the range of core:outcome to be the union of Event and Process; an - + + + + Only use if no specific subclasses of event:Event are appropriate. - - - - + + + + Something that happens at a given place and time. - - - - - - + + + This class will also display instances of subclasses under Event, e.g. Philosophy Department Discussion Club; 2009 Racker Lecture; screening of a documentary. In addition to a location in space and time, an event may have any or all the following qualities: actively participating agents, passive factors, work products. Also, it may be in a virtual space or part of a series such as a lecture series. The previous short definition was: "An arbitrary classification of a space/time region, by a cognitive agent." - + @@ -2894,6 +2846,11 @@ The previous short definition was: "An arbitrary classification of a space/time http://www.fao.org/figis/servlet/RefServlet Fisheries Global Information System http://www.fao.org/figis/servlet/RefServlet + + + + + http://www.fao.org/termportal/en/ @@ -2907,10 +2864,10 @@ The previous short definition was: "An arbitrary classification of a space/time http://www.fao.org/termportal/contr/es/ FAO terminology. FAOTERM. http://www.fao.org/termportal/en/ - + - - + + @@ -2924,6 +2881,11 @@ The previous short definition was: "An arbitrary classification of a space/time + + + 1 + + @@ -2950,23 +2912,18 @@ The previous short definition was: "An arbitrary classification of a space/time - + - - - - - - - + + The award bestowed may be represented with the Award class. - + - - + The bestowal of an award, honor, or distinction to a person or person's at a particular time. + @@ -2975,6 +2932,11 @@ The previous short definition was: "An arbitrary classification of a space/time + + + 1 + + Short Definition from the bibo ontology http://purl.org/ontology/bibo/ @@ -2991,6 +2953,16 @@ The previous short definition was: "An arbitrary classification of a space/time + + + + + + + + + + @@ -2998,20 +2970,25 @@ The previous short definition was: "An arbitrary classification of a space/time - Role of co-principal investigator of a grant, who devotes a specified percentage of time and is considered key personnel. + Role of co-principal investigator of an Agreement (for example, a grant), who devotes a specified percentage of time and is considered key personnel. - + - - + 1 + + + + + + - Professor, associate professor and assistant professor are common positions for academic faculty. + Professor; Associate Professor; Assistant Professor Academic position in a university or institution + - @@ -3023,20 +3000,35 @@ The previous short definition was: "An arbitrary classification of a space/time Global Trade Item Number 14 + - The dual relationship of a professor advising a student and the student being advised by a professor, typically including start and end dates - + - - + + - + - - + 1 + + + + + 1 + + + + + + + + + + + @@ -3053,10 +3045,10 @@ The previous short definition was: "An arbitrary classification of a space/time An explicit individual academic term, quarter, or semester rather than the generic fall, spring or summer semester. - + - 1 - + + @@ -3074,16 +3066,16 @@ modern society using the world of Star trek. Los Angeles Times, March An section number - - - - - + + + + + http://www.fao.org/termportal/contr/en/ http://www.fao.org/termportal/contr/es/ @@ -3114,13 +3106,18 @@ modern society using the world of Star trek. Los Angeles Times, March + + + + + - + - - + + @@ -3134,21 +3131,6 @@ modern society using the world of Star trek. Los Angeles Times, March a specific period or duration, defined by (optional) start and end date/times. - - - 1 - - - - - - - - - - - 1 - @@ -3159,23 +3141,28 @@ modern society using the world of Star trek. Los Angeles Times, March A document describing the exclusive right granted by a government to an inventor to manufacture, use, or sell an invention for a certain number of years + http://purl.org/ontology/bibo/ - stable A document describing the exclusive right granted by a government to an inventor to manufacture, use, or sell an invention for a certain number of years. - Short Definition from bibo ontology + Written script for a film production, including dialogue and descriptions of gestures, actions, shooting directions - + - - + + + + + + + @@ -3213,11 +3200,6 @@ modern society using the world of Star trek. Los Angeles Times, March - - - - 1 - We can't yet assume that we will only have a single ORCID id for a person. @@ -3252,6 +3234,11 @@ Examples of a Publisher include a person, an organization, or a service. Typical http://www.fao.org/termportal/contr/zh/ + + + + + @@ -3277,6 +3264,12 @@ Examples of a Publisher include a person, an organization, or a service. Typical A presentation of a series of slides, usually presented in front of an audience with written text and images. stable + + + + + + @@ -3309,10 +3302,25 @@ Examples of a Publisher include a person, an organization, or a service. Typical http://purl.org/ontology/bibo/ - + - - + + + + + + 1 + + + + + + + + + + + http://www.fao.org/termportal/contr/es/ @@ -3327,19 +3335,19 @@ Examples of a Publisher include a person, an organization, or a service. Typical 2010-06-24 - - - 1 - - A distinct, usually specialized educational unit within an educational organization. - - + + Endodontics (department within a College of Dentistry); English (department within a College of Liberal Arts) + + + + 1 + RearcherID is a Thomson Reuters project where researchers have a place to manage and share their professional information. It will allow them to solve author identity issues while simultaneously adding dynamic citation metrics and collaboration networks to your personal profile. Definition source: http://isiwebofknowledge.com/researcherid/ @@ -3347,11 +3355,6 @@ Definition source: http://isiwebofknowledge.com/researcherid/ - - - 1 - - @@ -3380,15 +3383,15 @@ Definition source: http://isiwebofknowledge.com/researcherid/ - - + An intramural or extramural award to support scholarly work, such as UF09179 (VIVO) Short definition is from the Glossary of NIH Terms. - - - + + + + Financial assistance mechanism providing money, property, or both to an eligible entity to carry out an approved project or activity @@ -3424,20 +3427,15 @@ Definition source: http://isiwebofknowledge.com/researcherid/ Information Science; Computer Science; Anthropology + + + + + This namespace - http://purl.org/dc/elements/1.1/ - does not appear to have this element. - - - - - - - - - 2 - @@ -3463,10 +3461,10 @@ Definition source: http://isiwebofknowledge.com/researcherid/2010-06-24 http://www.fao.org/termportal/en/ - + - - + + Universal Product Code @@ -3482,11 +3480,6 @@ Definition source: http://isiwebofknowledge.com/researcherid/ - - - 1 - - @@ -3494,20 +3487,15 @@ Definition source: http://isiwebofknowledge.com/researcherid/Intel Talent Search; poetry contest Not the same as an award or distinction. - + - - - - - - + - + - - + + @@ -3523,11 +3511,6 @@ Definition source: http://isiwebofknowledge.com/researcherid/stable - - - 1 - - @@ -3562,19 +3545,19 @@ Definition source: http://isiwebofknowledge.com/researcherid/ Address has properties for department name, street, city, state or province, postal code, and country. For US specific address, classify using core:US Postal Code. core:Address will display all addresses. + 200 University Avenue West, Waterloo, Ontario, Canada N2L 3G1 A specification of a location. To classify US specific addresses, use core:US Postal Code. - - - + Librarian; Library Systems Analyst; Music Bibliographer It is the common position in libraries. A position held by library and information science professionals, or academic or technical experts, in support of providing information services or materials + http://www.fao.org/termportal/contr/zh/ @@ -3594,31 +3577,37 @@ Definition source: http://isiwebofknowledge.com/researcherid/ Typically a student or a recent graduate undergoing supervised practical training. - + - - + + - - - - - - - - - - - + 1 - + + + + + + + + + + A role of editing + + + + + + + @@ -3641,26 +3630,31 @@ Definition source: http://isiwebofknowledge.com/researcherid/ - + - - + + - + - - + + 1 - + - - + 1 + + + + + + + A collection of individual agents (and may itself play the role of a Agent, ie. something that can perform actions). - A group can also be an organization but need not be; typically used for looser associations of people or organizations acting together in some fashion, not necessarily through formal agreement or on a long-term basis. Added to the VIVO ontology to be able to support informal and perhaps even private groups of people around an idea, funding opportunity, or event. see: http://xmlns.com/foaf/spec/#term_Group @@ -3673,18 +3667,23 @@ see: http://xmlns.com/foaf/spec/#term_Group A chapter of a book. A main division of a book + + + + + + + + 1 + + - Curriculum Steering Committee; PhD Advisory Committee A group of people organized for a specific purpose (e.g., a reporting or advisory role), often with a charge and for a specific duration. There could be many subclasses such as thesis committee or tenure committee, but these may typically be differentiated via the moniker unless distinct properties become important. - - - - - 1 + Short Definition from OCLC Input Standards, EntW @@ -3719,28 +3718,28 @@ see: http://xmlns.com/foaf/spec/#term_Group - + - - - - - - - + + This term is intended to be used with non-literal values as defined in the DCMI Abstract Model (http://dublincore.org/documents/abstract-model/). As of December 2007, the DCMI Usage Board is seeking a way to express this intention with a formal range declaration. + + + 1 + + - + 1320 East 10th Street, Wells Library 021 Bloomington, IN 47405 + + Formal address in US postal address system. - - US postal address follow the format street, apt or office number (optional), city, state, and zipcode. @@ -3750,21 +3749,26 @@ see: http://xmlns.com/foaf/spec/#term_Group - - - 1 - - - - A broad-ranging leader concept, from leading a small temporary committee to head of a large international organization. A leadership role + + + + + + + + + + + 1 + - A role in a grant as a named investigator or key personnel. + A role in an Agreement (for example, a grant) as a named investigator or key personnel. @@ -3775,14 +3779,14 @@ see: http://xmlns.com/foaf/spec/#term_Group A web page is an online document available (at least initially) on the world wide web. A web page is written first and foremost to appear on the web, as distinct from other online resources such as books, manuscripts or audio documents which use the web primarily as a distribution mechanism alongside other more traditional methods such as print. - - - + + Short Definition from the bibo ontology unstable + + A section of a book - http://purl.org/ontology/bibo/ A section of a book. @@ -3798,20 +3802,15 @@ see: http://xmlns.com/foaf/spec/#term_Group - + - - + + - + - - - - - - - + 1 + @@ -3827,11 +3826,6 @@ see: http://xmlns.com/foaf/spec/#term_Group - - - - - radio or newspaper interview @@ -3855,11 +3849,6 @@ see: http://xmlns.com/foaf/spec/#term_Group The Getty Museum A building or place where works of art, scientific specimens, or other objects of permanent value are kept and displayed. - - - 1 - - unstable http://purl.org/ontology/bibo/ @@ -3887,10 +3876,10 @@ see: http://xmlns.com/foaf/spec/#term_Group FAO terminology http://www.fao.org/termportal/contr/fr/ - + - - + 1 + @@ -3902,22 +3891,12 @@ see: http://xmlns.com/foaf/spec/#term_Group - - - - - - - - - - @@ -3930,21 +3909,6 @@ see: http://xmlns.com/foaf/spec/#term_Group - - - - - - - - 1 - - - - - 1 - - @@ -3967,16 +3931,6 @@ see: http://xmlns.com/foaf/spec/#term_Group SDB User Manual - - - - - - - - - - sub-Saharan Africa, North America @@ -3985,6 +3939,11 @@ see: http://xmlns.com/foaf/spec/#term_Group Not sure how to access the "Editor's Comments". But as North America is a continent, it would be placed directly into the continent subclass and viewable through this class along with any other subclass entities. Any region that goes beyond national boundaries and does not fit into any subclass of core:TransnationalRegion. + + + 1 + + @@ -4004,30 +3963,31 @@ see: http://xmlns.com/foaf/spec/#term_Group B.A. A short form for an longer title or name. - + - - + + A person holding a position that is not considered to be an academic appointment. - - - 1 - - - + - + + + + + + + - - + 1 + @@ -4041,10 +4001,10 @@ see: http://xmlns.com/foaf/spec/#term_Group - + - 1 - + + @@ -4079,20 +4039,10 @@ see: http://xmlns.com/foaf/spec/#term_Group - + - - - - - - - - - - - - + + @@ -4100,6 +4050,11 @@ see: http://xmlns.com/foaf/spec/#term_Group + + + + + An agent that is interviewed by another agent. stable @@ -4115,6 +4070,11 @@ see: http://xmlns.com/foaf/spec/#term_Group + + + + + @@ -4122,11 +4082,10 @@ see: http://xmlns.com/foaf/spec/#term_Group - A role of conducting funded or unfunded research, sometimes linked to a grant - Examples of research can be seen at: http://www.ufl.edu/research/products/index.html. Note these may have been funded, but the research doesn't have to be funded. Also, the research may be linked to a grant, but does not need to be. + Examples of research can be seen at: http://www.ufl.edu/research/products/index.html. Note these may have been funded, but the research doesn't have to be funded. Also, the research may be linked to an Agreement (for example, a Grant), but does not need to be. + A role of conducting funded or unfunded research, sometimes linked to an Agreement. - Bacteria-resistant bandage; Termite prevention system; Hurricane resistant houses Relates a document to some transcribed original. @@ -4137,11 +4096,21 @@ see: http://xmlns.com/foaf/spec/#term_Group unstable + + + 1 + + + + + 1 + + @@ -4162,13 +4131,13 @@ see: http://xmlns.com/foaf/spec/#term_Group + + - + An offering through an ongoing program or single request of research support: internships, positions, financial awards or other forms of tangible or intangible support - - - + @@ -4205,6 +4174,11 @@ bibo has the domain of this property set to the union of Collection and Document Residency is a stage of graduate medical training. + + + + + FAO terminology @@ -4218,10 +4192,10 @@ bibo has the domain of this property set to the union of Collection and Document 2010-06-24 - + - - + 1 + FAO terminology @@ -4236,16 +4210,26 @@ bibo has the domain of this property set to the union of Collection and Document http://www.fao.org/termportal/contr/ar/ FAO terminology. FAOTERM. http://www.fao.org/termportal/en/ - + - + + + + 1 + + A role of being a member in a Process or an Organization + + + + + @@ -4254,6 +4238,11 @@ bibo has the domain of this property set to the union of Collection and Document http://purl.org/ontology/bibo/1.2/ http://purl.org/ontology/bibo/ + + + + + @@ -4274,11 +4263,6 @@ bibo has the domain of this property set to the union of Collection and Document - - - - - @@ -4305,6 +4289,11 @@ bibo has the domain of this property set to the union of Collection and Document + + + + + @@ -4323,6 +4312,11 @@ bibo has the domain of this property set to the union of Collection and Document http://www.fao.org/termportal/contr/zh/ http://www.fao.org/termportal/en/ + + + + + @@ -4347,17 +4341,17 @@ bibo has the domain of this property set to the union of Collection and Document A bounded physical representation of a body of information designed with the capacity (and usually intent) to communicate - + + - Short Definition from the bibo ontology - - + stable + - http://purl.org/ontology/bibo/ A document (noun) is a bounded physical representation of body of information designed with the capacity (and usually intent) to communicate. A document may manifest symbolic, diagrammatic or sensory-representational information. + @@ -4365,6 +4359,11 @@ bibo has the domain of this property set to the union of Collection and Document + + + 1 + + @@ -4384,6 +4383,11 @@ bibo has the domain of this property set to the union of Collection and Document http://www.fao.org/termportal/contr/zh/ http://www.fao.org/termportal/contr/ar/ + + + + + @@ -4404,6 +4408,11 @@ bibo has the domain of this property set to the union of Collection and Document + + + + + FAO terminology http://www.fao.org/termportal/contr/ar/ @@ -4433,21 +4442,16 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi An edited book. - + + http://purl.org/ontology/bibo/ + Best American Science Writing 2009 stable An edited collection of stand-alone articles published as a book - - - - - - - - + Use subclasses of core:GeopoliticalEntity subclasses instead of this class if possible. @@ -4456,12 +4460,22 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi Short definition obtained here: http://en.wiktionary.org/wiki/geopolitical_entity. + + + + + + + + + + 100 Caldwell Hall; 114 Martha Van Rensselaer (Rushmore Conference Room) Room that provides a particular service or is used for a particular activity. @@ -4469,11 +4483,6 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi Enter room number of name. - - - 1 - - @@ -4482,41 +4491,46 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi + + + 1 + + - - - - - - - + + + + + + + + + + + + + + - + + + + - - - - - - - - - - - - - - + + + + + + + + - - - - - + @@ -4524,11 +4538,6 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi Medicine - - - - - http://www.fao.org/termportal/en/ http://www.fao.org/termportal/contr/ar/ @@ -4542,20 +4551,25 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi http://www.fao.org/termportal/contr/zh/ - + - - + 1 + + + + + 1 + Examples shows a book has French language version. Public description source: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . - + 1 - + @@ -4564,21 +4578,6 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - - - - - - - - - - - - - - - http://www.fao.org/termportal/contr/fr/ @@ -4593,9 +4592,9 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi http://www.fao.org/termportal/contr/ar/ - College of Arts & Sciences; Ivy Tech Community College + A primary academic unit within a University or a free-standing higher education organization without graduate degree programs. @@ -4604,10 +4603,10 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi This term is intended to be used with non-literal values as defined in the DCMI Abstract Model (http://dublincore.org/documents/abstract-model/). As of December 2007, the DCMI Usage Board is seeking a way to express this intention with a formal range declaration. - + - - + 1 + @@ -4626,36 +4625,31 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi http://data.worldbank.org/indicator/NY.GDP.MKTP.CD + + + + + - + - - + + - - - - - - - - - - - - - - - - + 1 - + + + + + + @@ -4689,25 +4683,30 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi Are we assuming that a PresenterRole is in a Presentation? Or could you have a PresenterRole in, say, a committee? A role of presenting information - + + + + + + + + + + + - - - 1 - - @@ -4715,10 +4714,10 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi + UITS service UITS service is the information technology services provided by Indiana University. SC. - - + A regularly offered service in support of an academic, research, or administrative function (not personal or professional service by an individual) @@ -4731,6 +4730,16 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi + + + + + + + + + + @@ -4741,6 +4750,11 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi + + + + + Cornell Ithaca; Cornell Geneva; Cornell New York City; Cornell Qatar @@ -4754,6 +4768,11 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi + + + + + unstable @@ -4763,22 +4782,37 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi http://purl.org/ontology/bibo/ Short Definition from the bibo ontology - + - - + + + + + + 1 + + + + 1 + + This is done with a restriction on agent. + + + 1 + + Code of Federal Regulations @@ -4789,34 +4823,24 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi A work consisting of texts of rules and regulations related to statutes issued by executive or administrative agencies A collection of statutes. - + - 1 - - - - - 1 - - - - - - - - - - - + + + Used information from this definition: http://dictionary.reference.com/browse/library. A collection of any materials, for study and enjoyment, which has been systematically arranged. - Marston Science Library + + + + + @@ -4826,9 +4850,9 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - + - + @@ -4839,11 +4863,6 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi http://purl.org/ontology/bibo/ - - - 1 - - http://www.fao.org/termportal/contr/ar/ http://www.fao.org/termportal/contr/fr/ @@ -4857,6 +4876,11 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi FAO terminology FAO terminology. FAOTERM. http://www.fao.org/termportal/en/ + + + 1 + + @@ -4875,38 +4899,23 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi Public Description for bibo:distributor taken from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . - + - 1 - + + - + - - - - - - + - - - - - - - - 1 - - full email address @@ -4917,21 +4926,22 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi We would like the range of core:outcome to be the union of Event and Process; and that same union to be the range for core:outcomeOf, but we cannot currently express this with the editor. - + - - + 1 + - Used to describe any "agent" related to bibliographic items. Such agents can be persons, organizations or groups of any kind. - - - - - see: http://xmlns.com/foaf/spec/#term_Agent - - Agents are things that do stuff + + + + see: http://xmlns.com/foaf/spec/#term_Agent + + + + + Used to describe any "agent" related to bibliographic items. Such agents can be persons, organizations or groups of any kind. @@ -4939,10 +4949,10 @@ We would like the range of core:outcome to be the union of Event and Process; an Chicago; New York; Bloomington; Gainesville - + - - + + @@ -4951,15 +4961,10 @@ We would like the range of core:outcome to be the union of Event and Process; an - + - - - - - - 1 - + + @@ -4967,26 +4972,6 @@ We would like the range of core:outcome to be the union of Event and Process; an For data ingest from authoritative sources to record the actual way a person was listed, as potentially valuable information for provenance and person disambiguation. Represents one person's information from one source at one particular time. For data ingest from authoritative sources to record the actual way a person was listed, as potentially valuable information for provenance and person disambiguation. - - - 1 - - - - - 1 - - - - - - - - - - - - @@ -5009,14 +4994,19 @@ We would like the range of core:outcome to be the union of Event and Process; an http://aims.fao.org/website/Search-AGROVOC/sub http://aims.fao.org/website/Search-AGROVOC/sub + + + 1 + + Used to link a bibliographic item to one of its contributor: can be an author, an editor, a publisher, etc. - + - - + + @@ -5024,15 +5014,10 @@ We would like the range of core:outcome to be the union of Event and Process; an - + - 1 - - - - - 1 - + + 1 @@ -5045,26 +5030,11 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - 1 - - Any organization (likely also asserted as another class of Organization) with a primary, ongoing research function, not just through occasional roles - - - 1 - - - - - - - @@ -5088,6 +5058,11 @@ We would like the range of core:outcome to be the union of Event and Process; an + + + + + http://www.fao.org/figis/servlet/RefServlet http://www.fao.org/figis/servlet/RefServlet @@ -5100,9 +5075,14 @@ We would like the range of core:outcome to be the union of Event and Process; an + + + + + + - Medical Subject Heading (MeSH) definition of Technical Report: Work consisting of a formal report giving details of the investigation and results of a medical or other scientific problem. When issued by a government agency or comparable official body, its contents may be classified, unclassified, or declassified with regard to security clearance. This publication type may also cover a scientific paper or article that records the current state or current position of scientific research and development. If so labeled by the editor or publisher, this publication type may be properly used for journal articles. A document describing an account or statement describing in detail an event, situation, or the like, usually as the result of observation, inquiry, etc.. http://purl.org/ontology/bibo/ @@ -5110,11 +5090,6 @@ We would like the range of core:outcome to be the union of Event and Process; an stable - - - - - @@ -5133,10 +5108,10 @@ We would like the range of core:outcome to be the union of Event and Process; an http://www.fao.org/termportal/contr/es/ FAO terminology - + - - + 1 + 2010-06-24 @@ -5151,10 +5126,10 @@ We would like the range of core:outcome to be the union of Event and Process; an http://www.fao.org/termportal/contr/fr/ - + - 1 - + + @@ -5163,55 +5138,60 @@ We would like the range of core:outcome to be the union of Event and Process; an A series of actions, changes, or functions bringing about a result - - + + - + - + + + When placing VIVO core in the Basic Formal Ontology (BFO) hierarchy, this is a subclass of BFO process which is defined as: "A processual entity that is a maximally connected spatiotemporal whole and has bona fide beginnings and endings corresponding to real discontinuities." - - - + - - + + - + + + + + + - - - - - - + - - + + - + - - + + + + + + + @@ -5219,28 +5199,38 @@ We would like the range of core:outcome to be the union of Event and Process; an A retired professor who has retained their rank, title and privileges. + + + + + + + + + + For individual, separate conferences, use conference instead. core:ConferenceSeries and core:SeminarSeries are very similar. An organized series of a meeting for consultation or discussion. + + + + + A person registered in an undergraduate program leading to a bachelor's degree or an undergraduate diploma or certificate. - - - - - An excerpted collection of words @@ -5250,14 +5240,24 @@ We would like the range of core:outcome to be the union of Event and Process; an http://purl.org/ontology/bibo/ Short Definition from the bibo ontology + + + + + + + + 1 + + A position involving academic work but without faculty status Researcher; Academic Extension Associate; Postdoctoral Associate + - + Those positions are held by people who do academic work but do not have faculty positions in universities or institutes. - @@ -5270,22 +5270,12 @@ We would like the range of core:outcome to be the union of Event and Process; an - - - 1 - - - - - 1 - - The example is one outreach role required by US space agency NASA, which is related with one project in NASA. Name of the outreach role should be put here. @@ -5293,25 +5283,25 @@ We would like the range of core:outcome to be the union of Event and Process; an An outreach or community service role directed outside a person's primary profession and institution Communicating Astronomy to the Public - + - 1 - - - - - + - + - - + 1 + + + + + + - stable - + + A loose, thematic, collection of Documents, often Books. A thematic collection of documents, usually books, issued at regular or irregular intervals @@ -5325,15 +5315,15 @@ We would like the range of core:outcome to be the union of Event and Process; an - + - - + 1 + - + - - + + Definition take from: http://dictionary.reference.com/browse/foundation. @@ -5342,6 +5332,11 @@ We would like the range of core:outcome to be the union of Event and Process; an The Ford Foundation + + + + + http://purl.org/ontology/bibo/ @@ -5351,6 +5346,12 @@ We would like the range of core:outcome to be the union of Event and Process; an A legal decision on appeal that takes action on a case (affirming it, reversing it, etc.). + + + + + + http://purl.org/ontology/bibo/ @@ -5359,6 +5360,11 @@ We would like the range of core:outcome to be the union of Event and Process; an CODEN became particularly common in the scientific community as a citation system for periodicals cited in technical- as well in chemistry-related publications and as a search tool in many bibliographic catalogues. Definition and description came from Wikipedia here: http://en.wikipedia.org/wiki/CODEN + + + + + This is done with a restriction on agent. @@ -5371,30 +5377,30 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik - + - - + + - + - - + + - + - - + + The showing of an object or a collection of objects, in an organized manner. - + 1 - + @@ -5404,19 +5410,14 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik http://www.fao.org/figis/servlet/RefServlet Fisheries Global Information System http://www.fao.org/figis/servlet/RefServlet - + - - - - - - 1 - + + - + Short Definition modified from the one found here: http://www.thefreedictionary.com/county. Alachua; Baker; Bradford; Kenora; Ottawa; Waterloo @@ -5424,14 +5425,9 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik - - A document confirming certain characteristics of a person or organization, usually provided by some form of external review, education, or assessment. A document confirming certain characteristics of a person or organization, usually provided by some form of external review, education, or assessment. - - - - - + A document confirming certain characteristics of a person or organization, usually provided by some form of external review, education, or assessment. + @@ -5439,6 +5435,11 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik + + + + + Short Definition from bibo ontology http://purl.org/ontology/bibo/ @@ -5448,10 +5449,10 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik - + - - 1 + 1 + @@ -5462,37 +5463,42 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik - - - - - - - + + Short Definition from the bibo ontology A distinct part of a larger document or collected document - http://purl.org/ontology/bibo/ a distinct part of a larger document or collected document. + unstable - - - + + + Short Definition copied from bibo ontology - http://purl.org/ontology/bibo/ + + A written or printed work of fiction or nonfiction, usually on sheets of paper fastened or bound together within covers. - A written or printed work of fiction or nonfiction, usually on sheets of paper fastened or bound together within covers stable + + + + + + + + + + @@ -5500,27 +5506,37 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik + + + + + A laboratory that exists primarily to conduct research vs. to provide services - + - - + 1 + - + + - An endeavor, frequently collaborative, that occurs over a finite period of time and is intended to achieve a particular aim. - + + An endeavor, frequently collaborative, that occurs over a finite period of time and is intended to achieve a particular aim. - + + + + + @@ -5532,15 +5548,10 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik - + - - - - - - - + + @@ -5571,15 +5582,30 @@ See also core:localAwardId. Note: Bibo:editor is used as the inverse of core:editorOf. Public Description for bibo:editor was obtained from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . + + + 1 + + + + + + + + + + 1 + + A postdoctoral training appointment (job) - + - - + + @@ -5597,27 +5623,32 @@ See also core:localAwardId. - - - 1 - - + + + + + - + - - + + + + + + + http://www.fao.org/termportal/contr/zh/ @@ -5644,6 +5675,16 @@ See also core:localAwardId. + + + 1 + + + + + + + @@ -5652,6 +5693,11 @@ See also core:localAwardId. + + + + + The name defining a special edition of a document. Normally its a literal value composed of a version number and words. @@ -5659,11 +5705,6 @@ See also core:localAwardId. http://purl.org/ontology/bibo/ - - - - - FAO terminology. FAOTERM. http://www.fao.org/termportal/en/ http://www.fao.org/termportal/contr/zh/ @@ -5677,10 +5718,15 @@ See also core:localAwardId. http://www.fao.org/termportal/en/ 2010-06-24 - + - - + + + + + + + @@ -5691,6 +5737,16 @@ See also core:localAwardId. + + + + + + + + 1 + + 2010-04-01 UN Statistics Division http://unstats.un.org/unsd/methods/m49/m49alpha.htm @@ -5701,6 +5757,11 @@ See also core:localAwardId. http://unstats.un.org/unsd/methods/m49/m49alpha.htm http://unstats.un.org/unsd/methods/m49/m49alpha.htm + + + + + paraphrased editorial note from the bibo ontology: We are not defining, using an enumeration, the range of the bibo:status to be a defined list of bibo:DocumentStatus. This is because we want people to be able to define new statuses if needed; and creating such an enumeration would prevent this. @@ -5709,11 +5770,11 @@ See also core:localAwardId. A list of items in a collection; an ordered compilation of item descriptions and sufficient information to afford access to them - + + NLM Catalog - Short Definition is the Medical Subject Heading (MeSH) definition diff --git a/productMods/WEB-INF/web.xml b/productMods/WEB-INF/web.xml index 389231e6..7c859b9e 100644 --- a/productMods/WEB-INF/web.xml +++ b/productMods/WEB-INF/web.xml @@ -789,12 +789,12 @@ - UserAccountsList - edu.cornell.mannlib.vitro.webapp.controller.accounts.UserAccountsListController + UserAccounts + edu.cornell.mannlib.vitro.webapp.controller.accounts.UserAccountsController - UserAccountsList - /listUserAccounts + UserAccounts + /userAccounts/* @@ -901,6 +901,12 @@ IndividualListController edu.cornell.mannlib.vitro.webapp.controller.freemarker.IndividualListController + IndividualListController /individuallist @@ -1003,12 +1009,6 @@ JSON Service edu.cornell.mannlib.vitro.webapp.controller.JSONServlet - JSON Service /dataservice diff --git 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@@ +/* $This file is distributed under the terms of the license in /doc/license.txt$ */ +/* + * Simple JavaScript Inheritance + * By John Resig http://ejohn.org/ + * MIT Licensed. + */ +// Inspired by base2 and Prototype +(function(){ + var initializing = false, fnTest = /xyz/.test(function(){xyz;}) ? /\b_super\b/ : /.*/; + // The base Class implementation (does nothing) + this.Class = function(){}; + + // Create a new Class that inherits from this class + Class.extend = function(prop) { + var _super = this.prototype; + + // Instantiate a base class (but only create the instance, + // don't run the init constructor) + initializing = true; + var prototype = new this(); + initializing = false; + + // Copy the properties over onto the new prototype + for (var name in prop) { + // Check if we're overwriting an existing function + prototype[name] = typeof prop[name] == "function" && + typeof _super[name] == "function" && fnTest.test(prop[name]) ? + (function(name, fn){ + return function() { + var tmp = this._super; + + // Add a new ._super() method that is the same method + // but on the super-class + this._super = _super[name]; + + // The method only need to be bound temporarily, so we + // remove it when we're done executing + var ret = fn.apply(this, arguments); + this._super = tmp; + + return ret; + }; + })(name, prop[name]) : + prop[name]; + } + + // The dummy class constructor + function Class() { + // All construction is actually done in the init method + if ( !initializing && this.init ) + this.init.apply(this, arguments); + } + + // Populate our constructed prototype object + Class.prototype = prototype; + + // Enforce the constructor to be what we expect + Class.constructor = Class; + + // And make this class extendable + Class.extend = arguments.callee; + + return Class; + }; +})(); \ No newline at end of file diff --git a/productMods/js/visualization/mapofscience/ColorStrategy.js b/productMods/js/visualization/mapofscience/ColorStrategy.js new file mode 100644 index 00000000..22848bb9 --- /dev/null +++ b/productMods/js/visualization/mapofscience/ColorStrategy.js @@ -0,0 +1,51 @@ +/* $This file is distributed under the terms of the license in /doc/license.txt$ */ +var ColorStrategy = Class.extend ({ + getColor: function(key) { + } +}); + +var SingleColorStrategy = ColorStrategy.extend ({ + init: function(defaultColor) { + this.defaultColor = '#000000'; + if (defaultColor) { + this.defaultColor = defaultColor; + } + }, + getColor: function(key) { + return this.defaultColor; + } +}); + +var DisciplineColorStrategy = SingleColorStrategy.extend ({ + init: function(defaultColor) { + this._super(defaultColor); + }, + getColor: function(key) { + var color = DISCIPLINES[key].color; + if (color) { + return color; + } else { + return this._super(key); + } + } +}); + +var SubdisciplineColorStrategy = ColorStrategy.extend ({ + init: function(defaultColor) { + this.colorStrategy = new DisciplineColorStrategy(defaultColor); + }, + getColor: function(key) { + var mapKey = SUBDISCIPLINES[key].discipline; + return this.colorStrategy.getColor(mapKey); + } +}); + +// Todo: Stop coding until comparison view, might need to use Temporal Line Graph solution +var AutoAssignColorStrategy = SingleColorStrategy.extend ({ + init: function(defaultColor, ColorList) { + this._super(defaultColor); + }, + getColor: function(key) { + } +}); + diff --git a/productMods/js/visualization/mapofscience/CustomMarker.js b/productMods/js/visualization/mapofscience/CustomMarker.js new file mode 100644 index 00000000..7ef978fa --- /dev/null +++ b/productMods/js/visualization/mapofscience/CustomMarker.js @@ -0,0 +1,36 @@ +/* $This file is distributed under the terms of the license in /doc/license.txt$ */ +var ScinodePolygon = Polygon.extend({ + init: function(options) { + options.polygon = createGoogleCirclePolygon(options); + this._super(options); + }, + setValue: function(value) { + this.options.value = value; + }, + getValue: function() { + return this.options.value; + }, + setSize: function(size) { + this.polygon.setRadius(size); + this.setZIndex(-size); + } +}); + +function createScinodeMarker(map, label, value, radius, color, latlng) { + var circleOptions = { + label: label, + value: value, + strokeColor: color, + strokeOpacity: 1.0, + strokeWeight: 1.0, + fillColor: color, + fillOpacity: 0.25, + map: map, + center: latlng, + zIndex: -radius, + radius: radius // min: 10000, max: 2500000 + }; + + return new ScinodePolygon(circleOptions); +} + diff --git a/productMods/js/visualization/mapofscience/CustomScimaps.js b/productMods/js/visualization/mapofscience/CustomScimaps.js new file mode 100644 index 00000000..42aa1f51 --- /dev/null +++ b/productMods/js/visualization/mapofscience/CustomScimaps.js @@ -0,0 +1,62 @@ +/* $This file is distributed under the terms of the license in /doc/license.txt$ */ +var DISCIPLINES = {"11": {"color": "#61FFE0", "longitude": -74.53125, "label": "Chemical, Mechanical, & Civil Engineering", "latitude": 57.80419}, "10": {"color": "#A61815", "longitude": -52.734375, "label": "Earth Sciences", "latitude": -19.797}, "13": {"color": "#FF82FF", "longitude": -144.140625, "label": "Electrical Engineering & Computer Science", "latitude": 75.89095}, "12": {"color": "#A518FB", "longitude": -129.375, "label": "Math & Physics", "latitude": 81.8504}, "1": {"color": "#FFB52A", "longitude": 76.641, "label": "Health Professionals", "latitude": 83.2171}, "3": {"color": "#FFFF00", "longitude": 164.53125, "label": "Social Sciences", "latitude": 61.69543}, "2": {"color": "#1800FF", "longitude": -45.7031, "label": "Chemistry", "latitude": 81.64863}, "5": {"color": "#FF0000", "longitude": 99.84375, "label": "Brain Research", "latitude": 68.7247}, "4": {"color": "#FFFF80", "longitude": 163.125, "label": "Humanities", "latitude": -14.42333}, "7": {"color": "#B8140B", "longitude": 47.109375, "label": "Infectious Diseases", "latitude": 55.8819}, "6": {"color": "#FF7D47", "longitude": 44.296875, "label": "Medical Specialties", "latitude": 71.36081}, "9": {"color": "#349803", "longitude": -19.6875, "label": "Biology", "latitude": 1.593542}, "8": {"color": "#00FF80", "longitude": 0.0, "label": "Biotechnology", "latitude": 48.58235}}; +var SUBDISCIPLINES = {"344": {"latitude": 75.320025, "discipline": "11", "longitude": -92.109375, "label": "Printing"}, "345": {"latitude": 12.554564, "discipline": "9", "longitude": -16.875, "label": "Genetics"}, "346": {"latitude": 74.402163, "discipline": "11", "longitude": -94.21875, "label": "Industrial Chemistry"}, "347": {"latitude": 77.617709, "discipline": "6", "longitude": 56.25, "label": "Obesity"}, "340": {"latitude": 11.178402, "discipline": "9", "longitude": 8.4375, "label": "Parasitology"}, "341": {"latitude": 54.162434, "discipline": "6", "longitude": -1.40625, "label": "Dairy Science"}, "342": {"latitude": 42.55308, "discipline": "11", "longitude": -65.390625, "label": "Water Policy"}, "343": {"latitude": -7.013668, "discipline": "11", "longitude": -38.671875, "label": "Fish Research"}, "348": {"latitude": -21.943046, "discipline": "4", "longitude": 165.234375, "label": "Literary Criticism"}, "349": {"latitude": 31.952162, "discipline": "6", "longitude": 40.78125, "label": "Hepatology"}, "298": {"latitude": 84.865782, "discipline": "1", "longitude": 89.296875, "label": "AIDS Treatment"}, "299": {"latitude": 77.31252, "discipline": "13", "longitude": -140.625, "label": "Wireless Communication"}, "296": {"latitude": 67.609221, "discipline": "11", "longitude": -99.84375, "label": "Vehicle System Design"}, "297": {"latitude": 59.888937, "discipline": "7", "longitude": 35.859375, "label": "Transfusion"}, "294": {"latitude": 27.683528, "discipline": "9", "longitude": -21.09375, "label": "Crop Science"}, "295": {"latitude": 74.775843, "discipline": "13", "longitude": -148.359375, "label": "Fuzzy Sets"}, "292": {"latitude": 79.560546, "discipline": "6", "longitude": 74.53125, "label": "Hospice Care"}, "293": {"latitude": -2.811371, "discipline": "11", "longitude": -54.140625, "label": "Climatology"}, "290": {"latitude": 58.447733, "discipline": "3", "longitude": 157.5, "label": "Science Education"}, "291": {"latitude": 74.775843, "discipline": "12", "longitude": -156.09375, "label": "Design & Analysis of Algorithms"}, "199": {"latitude": 82.214217, "discipline": "2", "longitude": -68.203125, "label": "Catalysis"}, "198": {"latitude": 49.382373, "discipline": "3", "longitude": 168.046875, "label": "Political Geography"}, "195": {"latitude": 81.723188, "discipline": "2", "longitude": -23.203125, "label": "Atomic Spectrometry"}, "194": {"latitude": 80.647035, "discipline": "1", "longitude": 62.578125, "label": "Dental Research"}, "197": {"latitude": 84.865782, "discipline": "1", "longitude": 63.984375, "label": "Public Health Service"}, "196": {"latitude": 16.636192, "discipline": "9", "longitude": -22.5, "label": "Botany"}, "191": {"latitude": 80.872827, "discipline": "1", "longitude": 63.984375, "label": "Prosthetic Dentistry"}, "190": {"latitude": 57.704147, "discipline": "6", "longitude": 33.046875, "label": "Clinical Infectious Disease"}, "193": {"latitude": 74.959392, "discipline": "13", "longitude": -139.921875, "label": "Robotic Systems"}, "192": {"latitude": 79.812302, "discipline": "1", "longitude": 60.46875, "label": "Orthodontics"}, "270": {"latitude": 53.330873, "discipline": "3", "longitude": -179.296875, "label": "Agricultural Economics"}, "271": {"latitude": 65.366837, "discipline": "3", "longitude": 143.4375, "label": "Social Work"}, "272": {"latitude": 83.753911, "discipline": "1", "longitude": 80.15625, "label": "Medical Insurance"}, "273": {"latitude": 81.823794, "discipline": "11", "longitude": -76.640625, "label": "Fluid Phase Equilibrium"}, "274": {"latitude": 52.05249, "discipline": "8", "longitude": 7.734375, "label": "Biotechnology Trends"}, "275": {"latitude": -15.961329, "discipline": "11", "longitude": -58.359375, "label": "Air Quality"}, "276": {"latitude": 68.911005, "discipline": "13", "longitude": -168.046875, "label": "Search Engines; Web Crawling"}, "277": {"latitude": 82.214217, "discipline": "2", "longitude": -78.75, "label": "Colloid"}, "278": {"latitude": 76.351896, "discipline": "1", "longitude": 61.875, "label": "Applied Physiology; Muscle"}, "279": {"latitude": -21.943046, "discipline": "4", "longitude": 164.53125, "label": "Biblical Literature"}, "524": {"latitude": -6.315299, "discipline": "9", "longitude": -23.90625, "label": "Mammals"}, "525": {"latitude": 30.751278, "discipline": "6", "longitude": 54.84375, "label": "Impotence"}, "526": {"latitude": 76.840816, "discipline": "13", "longitude": -144.140625, "label": "Fuzzy Logic"}, "527": {"latitude": 58.813742, "discipline": "3", "longitude": 168.75, "label": "Tourism"}, "520": {"latitude": 2.811371, "discipline": "9", "longitude": -35.859375, "label": "Rangeland Ecology"}, "521": {"latitude": 81.518272, "discipline": "11", "longitude": -100.546875, "label": "Welding"}, "522": {"latitude": 74.402163, "discipline": "3", "longitude": -168.75, "label": "Reliability Engineering"}, "523": {"latitude": 48.458352, "discipline": "7", "longitude": 18.984375, "label": "Molecular Biology Methods"}, "528": {"latitude": -14.604847, "discipline": "9", "longitude": -19.6875, "label": "Aquatic Disease"}, "529": {"latitude": -23.885838, "discipline": "11", "longitude": -63.28125, "label": "Geographic Information Science"}, "449": {"latitude": 38.822591, "discipline": "8", "longitude": 1.40625, "label": "Systematics & Evolutionary Microbiology"}, "448": {"latitude": 78.490552, "discipline": "11", "longitude": -97.03125, "label": "Sensors & Actuators"}, "443": {"latitude": 55.776573, "discipline": "6", "longitude": 23.90625, "label": "Sexually Transmitted Diseases"}, "442": {"latitude": 38.822591, "discipline": "11", "longitude": -75.9375, "label": "Applied Geophysics"}, "441": {"latitude": 59.534318, "discipline": "7", "longitude": 9.84375, "label": "Peptides"}, "440": {"latitude": 76.679785, "discipline": "11", "longitude": -88.59375, "label": "Digital Printing"}, "447": {"latitude": 83.277705, "discipline": "1", "longitude": 88.59375, "label": "Geratric Nursing"}, "446": {"latitude": 71.965388, "discipline": "13", "longitude": -157.5, "label": "Machine Learning"}, "445": {"latitude": 65.946472, "discipline": "5", "longitude": 81.5625, "label": "NeuroImmunology"}, "444": {"latitude": 58.813742, "discipline": "3", "longitude": 156.796875, "label": "Engineering Education"}, "108": {"latitude": 82.586106, "discipline": "12", "longitude": -127.265625, "label": "Chaos Fractals & Complexity"}, "109": {"latitude": 12.554564, "discipline": "11", "longitude": -21.09375, "label": "Environmental Contamination"}, "102": {"latitude": 81.823794, "discipline": "11", "longitude": -101.953125, "label": "Alloys"}, "103": {"latitude": 80.647035, "discipline": "12", "longitude": -116.015625, "label": "Astronomy & Astrophysics"}, "100": 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"63": {"latitude": 65.366837, "discipline": "5", "longitude": 90.0, "label": "Neurology"}, "533": {"latitude": 69.411242, "discipline": "5", "longitude": 88.59375, "label": "Neurotoxicology"}, "532": {"latitude": 66.51326, "discipline": "5", "longitude": 92.8125, "label": "Sleep"}, "531": {"latitude": 83.111071, "discipline": "6", "longitude": 59.0625, "label": "Public Health"}, "530": {"latitude": 76.184995, "discipline": "6", "longitude": 43.59375, "label": "Hormone Research"}, "539": {"latitude": 78.349411, "discipline": "1", "longitude": 54.140625, "label": "Optometry"}, "538": {"latitude": 82.586106, "discipline": "2", "longitude": -44.296875, "label": "Green Chemistry"}, "115": {"latitude": 80.647035, "discipline": "2", "longitude": -4.921875, "label": "Phytochemistry"}, "114": {"latitude": 66.51326, "discipline": "6", "longitude": 58.359375, "label": "Thoracic Surgery"}, "117": {"latitude": 56.944974, "discipline": "8", "longitude": 5.625, "label": "Food Protection"}, "116": {"latitude": 31.952162, "discipline": "9", "longitude": 16.875, "label": "Tropical Medicine"}, "111": {"latitude": 74.959392, "discipline": "11", "longitude": -116.015625, "label": "Mechanical Design Engineering"}, "110": {"latitude": 67.609221, "discipline": "1", "longitude": 67.5, "label": "Otolaryngology; Laryngoscope"}, "113": {"latitude": -2.811371, "discipline": "9", "longitude": -33.046875, "label": "Biological Conservation"}, "112": {"latitude": -19.973349, "discipline": "4", "longitude": 165.234375, "label": "Classics"}, "119": {"latitude": 69.411242, "discipline": "11", "longitude": -85.078125, "label": "Energy Fuel"}, "118": {"latitude": 75.320025, "discipline": "13", "longitude": -141.328125, "label": "Broadband Communication"}, "429": {"latitude": 23.885838, "discipline": "11", "longitude": -40.78125, "label": "Weed Management"}, "428": {"latitude": 73.82482, "discipline": "13", "longitude": -147.65625, "label": "Computer Networks"}, "534": {"latitude": 70.377854, "discipline": "6", "longitude": 47.109375, "label": "Pediatric Research"}, "421": {"latitude": 75.320025, "discipline": "11", "longitude": -71.71875, "label": "Dyes & Pigments"}, "420": {"latitude": -14.604847, "discipline": "4", "longitude": 164.53125, "label": "Semiotics"}, "423": {"latitude": -4.214943, "discipline": "9", "longitude": -25.3125, "label": "Molecular Ecology"}, "422": {"latitude": 73.428424, "discipline": "6", "longitude": 52.03125, "label": "Drug Safety"}, "425": {"latitude": 70.140364, "discipline": "1", "longitude": 125.15625, "label": "Clinical Psychiatry"}, "424": {"latitude": 56.559482, "discipline": "7", "longitude": 38.671875, "label": "Cytogentics & Genome Mapping"}, "427": {"latitude": 38.272689, "discipline": "11", "longitude": -61.875, "label": "Water Waste"}, "426": {"latitude": -9.102097, "discipline": "10", "longitude": -55.546875, "label": "Paleogeography"}, "308": {"latitude": 78.490552, "discipline": "13", "longitude": -134.296875, "label": "Electrical Networks"}, "309": {"latitude": 21.943046, "discipline": "6", "longitude": 50.625, "label": "Endoscopy"}, "300": {"latitude": 71.524909, "discipline": "6", "longitude": 49.21875, "label": "Atherosclerosis"}, "301": {"latitude": 84.267172, "discipline": "1", "longitude": 82.96875, "label": "Region & Medical Ethids"}, "302": {"latitude": 65.07213, "discipline": "5", "longitude": 115.3125, "label": "Speech Language & Hearing"}, "303": {"latitude": 61.606396, "discipline": "6", "longitude": 38.671875, "label": "Thoracic & Respiratory"}, "304": {"latitude": 47.040182, "discipline": "6", "longitude": 8.4375, "label": "Veterinary Microbiology"}, "305": {"latitude": 32.546813, "discipline": "11", "longitude": -45.0, "label": "Environmental Protection"}, "306": {"latitude": 72.181804, "discipline": "13", "longitude": -150.46875, "label": "Computer Systems Design"}, "307": {"latitude": 25.165173, "discipline": "11", "longitude": -46.40625, "label": "Environmental Polution"}, "229": {"latitude": 82.586106, "discipline": "12", "longitude": -116.015625, "label": "Nuclear Instrumentation"}, "228": {"latitude": 80.178714, "discipline": "12", "longitude": -130.78125, "label": "Simulation"}, "227": {"latitude": 12.554564, "discipline": "11", "longitude": -45.0, "label": "Soil Science"}, "226": {"latitude": 65.366837, "discipline": "1", "longitude": 84.375, "label": "Audiology"}, "225": {"latitude": 74.775843, "discipline": "13", "longitude": -131.484375, "label": "Robotics"}, "224": {"latitude": 70.377854, "discipline": "1", "longitude": 69.609375, "label": "Spine"}, "223": {"latitude": 81.518272, "discipline": "11", "longitude": -120.9375, "label": "Photo-Optics"}, "222": {"latitude": -7.013668, "discipline": "4", "longitude": 161.71875, "label": "Linguistics"}, "221": {"latitude": 80.178714, "discipline": "12", "longitude": -148.359375, "label": "Functional Analysis"}, "220": {"latitude": 52.48278, "discipline": "3", "longitude": 168.75, "label": "Urban Studies"}, "391": {"latitude": -0.703107, "discipline": "4", "longitude": 165.234375, "label": "Asian Studies"}, "390": {"latitude": 78.490552, "discipline": "1", "longitude": 112.5, "label": "Psychiatric Nursing"}, "151": {"latitude": 84.267172, "discipline": "1", "longitude": 82.265625, "label": "BioEthics"}, "150": {"latitude": 69.657086, "discipline": "1", "longitude": 104.0625, "label": "Psychosis; Schizophrenia"}, "153": {"latitude": 77.617709, "discipline": "13", "longitude": -134.296875, "label": "Power Distribution"}, "152": {"latitude": 72.181804, "discipline": "13", "longitude": -144.140625, "label": "Parellel Computing"}, "155": {"latitude": 76.351896, "discipline": "11", "longitude": -83.671875, "label": "Wood"}, "154": {"latitude": 74.402163, "discipline": "1", "longitude": 121.640625, "label": "Gerontology"}, "157": {"latitude": -14.604847, "discipline": "10", "longitude": -62.578125, "label": "Geology & Tectonics"}, "156": {"latitude": 78.490552, "discipline": "12", "longitude": -152.578125, "label": "Discrete Applied Mathematics"}, "159": {"latitude": 74.402163, "discipline": "13", "longitude": -146.953125, "label": "Mobil Networks"}, "158": {"latitude": -14.604847, "discipline": "10", "longitude": -63.984375, "label": "GeoChemistry"}, "399": {"latitude": 56.559482, "discipline": "6", "longitude": 54.140625, "label": "Surgical Oncology"}, "398": {"latitude": 77.767582, "discipline": "13", "longitude": -138.515625, "label": "Power Systems"}, "48": {"latitude": 58.813742, "discipline": "7", "longitude": 23.203125, "label": "Molecular Cell Biology"}, "49": {"latitude": 69.411242, "discipline": "8", "longitude": 4.21875, "label": "Food Chemistry"}, "46": {"latitude": 82.214217, "discipline": "13", "longitude": -122.34375, "label": "Applied Optics"}, "47": {"latitude": 73.2267, "discipline": "11", "longitude": -94.21875, "label": "Nuclear Engineering"}, "44": {"latitude": 63.548552, "discipline": "1", "longitude": 74.53125, "label": "Neurosurgery"}, "45": {"latitude": 67.609221, "discipline": "6", "longitude": 38.671875, "label": "Fertility"}, "42": {"latitude": 73.82482, "discipline": "6", "longitude": 30.9375, "label": "Nutrition"}, "43": {"latitude": 59.534318, "discipline": "3", "longitude": -177.890625, "label": "Finance"}, "40": {"latitude": 65.946472, "discipline": "5", "longitude": 99.84375, "label": "Clinical Neurophysiology"}, "41": {"latitude": 75.497157, "discipline": "1", "longitude": 54.140625, "label": "Opthomology"}, "5": {"latitude": 76.679785, "discipline": "13", "longitude": -140.625, "label": "Signal Processing"}, "489": {"latitude": 75.497157, "discipline": "13", "longitude": -143.4375, "label": "Consumer Electronics"}, "488": {"latitude": -12.554564, "discipline": "4", "longitude": 166.640625, "label": "Economic & Human Biology"}, "487": {"latitude": -10.487812, "discipline": "9", "longitude": -28.125, "label": "Fish Biology"}, "486": {"latitude": 65.946472, "discipline": "3", "longitude": 178.59375, "label": "Operations Management"}, "485": {"latitude": 70.140364, "discipline": "5", "longitude": 81.5625, "label": "Headache"}, "484": {"latitude": 78.767792, "discipline": "13", "longitude": -134.296875, "label": "Antennae; Mobile Radio"}, "483": {"latitude": 81.20142, "discipline": "12", "longitude": -116.015625, "label": "Superconductor Science"}, "482": {"latitude": 81.413933, "discipline": "11", "longitude": -101.953125, "label": "Friction Lubrication & Wear"}, "481": {"latitude": 76.679785, "discipline": "13", "longitude": -140.625, "label": "Circuits"}, "480": {"latitude": 77.31252, "discipline": "11", "longitude": -78.75, "label": "Wood & Wood Components"}, "472": {"latitude": 70.377854, "discipline": "3", "longitude": 130.78125, "label": "Psychosomatic Medicine"}, "473": {"latitude": 80.647035, "discipline": "1", "longitude": 66.09375, "label": "Pharmaco Economics"}, "470": {"latitude": 80.872827, "discipline": "2", "longitude": -70.3125, "label": "Carbon"}, "471": {"latitude": 60.930432, "discipline": "6", "longitude": 46.40625, "label": "Gynecology Oncology"}, "476": {"latitude": 75.320025, "discipline": "12", "longitude": -161.71875, "label": "Cancer Statistics"}, "477": {"latitude": 67.339861, "discipline": "5", "longitude": 118.125, "label": "Consciousness"}, "474": {"latitude": 78.061989, "discipline": "13", "longitude": -149.765625, "label": "Computer Modeling and Animation"}, "475": {"latitude": 84.267172, "discipline": "1", "longitude": 78.75, "label": "Medical Practice"}, "478": {"latitude": 67.339861, "discipline": "1", "longitude": 68.203125, "label": "Otolyngology; Head Neck"}, "479": {"latitude": 70.844673, "discipline": "6", "longitude": 59.0625, "label": "Heart Failure; Catheters"}}; + +function createScimapType(map, mapName) { + var sciMapTypeOptions = { + getTileUrl: function(coord, zoom) { + var normalizedCoord = getNormalizedCoord(coord, zoom); + if (!normalizedCoord) { + return mapOfScienceImageFolderPrefix + "tiles/blank.png"; + } + var bound = Math.pow(2, zoom); + return mapOfScienceImageFolderPrefix + "tiles/tiles" + zoom + "_" + normalizedCoord.x + "_" + + normalizedCoord.y + ".png"; + }, + tileSize: new google.maps.Size(256, 256), + isPng: true, + minZoom: 1, + maxZoom: 4, + name: mapName + }; + + var sciMapType = new google.maps.ImageMapType(sciMapTypeOptions); + map.mapTypes.set(mapName, sciMapType); +} + +//Normalizes the coords that tiles repeat across the x axis (horizontally) +// like the standard Google map tiles. +function getNormalizedCoord(coord, zoom) { + var y = coord.y; + var x = coord.x; + + // tile range in one direction range is dependent on zoom level + // 0 = 1 tile, 1 = 2 tiles, 2 = 4 tiles, 3 = 8 tiles, etc + var tileRange = 1 << zoom; + + // don't repeat across y-axis (vertically) + if (y < 0 || y > customTileRange(zoom)) { + return null; + } + + // repeat across x-axis (horizontal) + if (x < 0 || x >= tileRange) { + x = (x % tileRange + tileRange) % tileRange; + } + + return { + x: x, + y: y + }; +} + +// horizontal range bound +function customTileRange(zoom) { + if (zoom < 3) { + return zoom; + } else if (zoom == 3){ + return 4; + } else if (zoom == 4) { + return 9; + } +} \ No newline at end of file diff --git a/productMods/js/visualization/mapofscience/DownloadManager.js b/productMods/js/visualization/mapofscience/DownloadManager.js new file mode 100644 index 00000000..9a0195cf --- /dev/null +++ b/productMods/js/visualization/mapofscience/DownloadManager.js @@ -0,0 +1,50 @@ +/* $This file is distributed under the terms of the license in /doc/license.txt$ */ +/** + * Manage async download contents and make sure don't have the same + * download request in the same time. Provide ability to abort download. + */ + +var DownloadManager = Class.extend({ + init: function() { + this.downloadList = {}; + }, + download: function(url, success) { + if (!this.hasKey(url)) { + this.downloadList[url] = { success: success, // TODO Try removing this property + jqxhr: this.startDownload(url, success, this.downloadList)}; + } + }, + downloadAndWait: function(url, success) { + if (!this.hasKey(url)) { + $.ajax({ + url: url, + async: false, + dataType: 'json', + success: function(countData) { success(countData); } + }); + } + }, + startDownload: function(url, success, downloadList) { + return $.getJSON(url, // TODO Not always "latest" //TODO Test on server with big file that consume 3 seconds download time. Then Keep on and off the checkbox while downloading, to verify if the duplicate happens + function(countData) { + if (success) { + success(countData); + } + delete(downloadList[url]); + } + ); + }, + hasKey: function(url) { + return (this.downloadList[url]); + }, + abort: function(url) { + var options = this.downloadList[url]; + if (options) { + options.jqxhr.abort(); + delete(this.downloadList[url]); + } + }, + isDone: function(url) { + return !this.hasKey(url); + } +}); \ No newline at end of file diff --git a/productMods/js/visualization/mapofscience/GMapAPI.js b/productMods/js/visualization/mapofscience/GMapAPI.js new file mode 100644 index 00000000..f073ca39 --- /dev/null +++ b/productMods/js/visualization/mapofscience/GMapAPI.js @@ -0,0 +1,55 @@ +/* $This file is distributed under the terms of the license in /doc/license.txt$ */ +/** + * This is the Google MAP API utilities file to make sure all calls to + * Google API is correct. Please add all common utilities at here. + */ +var GMAPS = google.maps; +var GEVENT = google.maps.event; +var DEFAULT_POINT = new google.maps.Point(0, 0); + +function createMarkerImage(url, width, height) { + return new GMAPS.MarkerImage( + url, + new GMAPS.Size(width, height), /* set the image viewable window size */ + DEFAULT_POINT, /* Use this to cut the image */ + // TODO Fix icons so their center at the right spot. Very low priority. + new google.maps.Point(width/2, height/2), /* use this to shift the marker location in pixels. Default */ + new GMAPS.Size(width, height)); /* set the desired image size */ +} + +function createNoWrapLatLng(lat, lng) { + return new GMAPS.LatLng(lat, lng, true); +} + +function createGoogleCirclePolygon(options) { + return new GMAPS.Circle(options); +} + +function createGoogleMarker(options) { + return new GMAPS.Marker(options); +} + +function createInfoWindow(content, maxWidth) { + return new GMAPS.InfoWindow({ + content: content, + maxWidth: maxWidth + }); +} + +function addMouseOverListener(marker, actionFunction) { + return GEVENT.addListener(marker, 'mouseover', actionFunction); +} + +function addMouseOutListener(marker, actionFunction) { + return GEVENT.addListener(marker, 'mouseout', actionFunction); +} + +function addClickListener(marker, actionFunction) { + return GEVENT.addListener(marker, 'click', actionFunction); +} + +function removeListeners(handlers) { + $.each(handlers, function(){ + GEVENT.removeListener(this); + }); +} diff --git a/productMods/js/visualization/mapofscience/InitializeMap.js b/productMods/js/visualization/mapofscience/InitializeMap.js new file mode 100644 index 00000000..d6af4d3c --- /dev/null +++ b/productMods/js/visualization/mapofscience/InitializeMap.js @@ -0,0 +1,62 @@ +/* $This file is distributed under the terms of the license in /doc/license.txt$ */ +var map; +var markerManager; +var universityModeMarkerManagers; +var textControl; +var legendControl; +var downloader; +var currentVisMode; +var currentController; +var visModeControllers = {}; + +function loadMap() { + var gMap = google.maps; + var centerLatLng = new google.maps.LatLng(50, 0); + + var mapOptions = { + center: centerLatLng, + zoom: 1, + mapTypeControlOptions: { + mapTypeIds: [] + } + }; + + var mapAreaId = $("#map_area"); + map = new gMap.Map(mapAreaId[0], mapOptions); + + var mapName = 'Scimap'; + createScimapType(map, mapName); + map.setMapTypeId(mapName); +} + +function initMapControls() { + //textControl = new TextControl({map: map, divClass: 'time_div'}); + //textControl.setText("1991"); +} + +function initVisModeController() { + var controller = new EntityVisModeController(map); + visModeControllers[controller.visMode] = controller; + switchVisMode(controller.visMode); +} + +function initMarkers() { + downloader = new DownloadManager(); + loadMarkers(ENTITY_VIS_MODE, scienceMapDataURL, false); +} + +function initMap() { + loadMap(); + initMapControls(); + initVisModeController(); + initMarkers(); +} + +function helper() { + /* override helper function to avoid reload script */ +} + +/* Using .load instead of .ready due to issue with IE and Google Maps API */ +$(window).load(function() { + initMap(); +}); \ No newline at end of file diff --git a/productMods/js/visualization/mapofscience/MarkerManager.js b/productMods/js/visualization/mapofscience/MarkerManager.js new file mode 100644 index 00000000..31cb95b9 --- /dev/null +++ b/productMods/js/visualization/mapofscience/MarkerManager.js @@ -0,0 +1,103 @@ +/* $This file is distributed under the terms of the license in /doc/license.txt$ */ +/** + * The MarkerManager is more like a composite class of Marker. It manages + * markers by grouping the markers by keys. + */ +var MarkerManager = Class.extend({ + init: function(colorStrategy, sizeCoder) { + this.keyToMarker = {}; + this.colorStrategy = colorStrategy; + this.sizeCoder = sizeCoder; + }, + addMarker: function(key, marker) { + this.keyToMarker[key] = marker; + }, + getMarker: function(key) { + return this.keyToMarker[key]; + }, + hasKey: function(key) { + return (this.keyToMarker.hasOwnProperty(key)); + }, + showMarkers: function() { + $.each(this.keyToMarker, function(i, marker) { + marker.show(); + }); + }, + hideMarkers: function() { + $.each(this.keyToMarker, function(i, marker) { + marker.hide(); + }); + }, + addMarkersToMap: function() { + console.log(this.keyToMarker); + $.each(this.keyToMarker, function(i, marker) { + marker.addToMap(); + }); + }, + removeMarkersFromMap: function() { + $.each(this.keyToMarker, function(i, marker) { + marker.removeFromMap(); + }); + } +}); + +/** + * Customized MarkerManager for Science map purpose. It is be an abstract class + */ +ScimapMarkerManager = MarkerManager.extend({ + init: function(map, colorStrategy, sizeCoder) { + this._super(); + this.colorStrategy = colorStrategy; + this.sizeCoder = sizeCoder; + this.map = map; + this.layer = {}; + }, + setSizeCoder: function(sizeCoder) { + this.sizeCoder = sizeCoder; + }, + createMarker: function(key, density) { + var me = this; + var marker; + if (!me.hasKey(key)) { + var size = me.sizeCoder.getSize(density); + var color = me.colorStrategy.getColor(key); + var layer = me.layer; + var label = layer[key].label; + var latlng = createNoWrapLatLng(layer[key].latitude, layer[key].longitude); + marker = createScinodeMarker(me.map, label, density, size, color, latlng); + me.addMarker(key, marker); + } else { + marker = me.keyToMarker[key]; + marker.setValue(marker.getValue() + density); + marker.setSize(me.sizeCoder.getSize(marker.getValue())); + } + return marker; + }, + updateMarkerViews: function() { + var me = this; + for (var key in me.keyToMarker) { + var marker = me.keyToMarker[key]; + marker.setSize(me.sizeCodingFunc(marker.getValue())); + marker.setColor(me.colorStrategy.getColor(key)); + } + } +}); + +var DisciplineMarkerManager = ScimapMarkerManager.extend({ + init: function(map, colorStrategy, sizeCoder) { + this._super(map, colorStrategy, sizeCoder); + this.layer = DISCIPLINES; + }, + createMarker: function(subdisciplineKey, density) { + var me = this; + var key = SUBDISCIPLINES[subdisciplineKey].discipline; + return this._super(key, density); + } +}); + +var SubdisciplineMarkerManager = ScimapMarkerManager.extend({ + init: function(map, colorStrategy, sizeCoder) { + this._super(map, colorStrategy, sizeCoder); + this.layer = SUBDISCIPLINES; + } +}); diff --git a/productMods/js/visualization/mapofscience/Polygon.js b/productMods/js/visualization/mapofscience/Polygon.js new file mode 100644 index 00000000..a925f14f --- /dev/null +++ b/productMods/js/visualization/mapofscience/Polygon.js @@ -0,0 +1,53 @@ +/* $This file is distributed under the terms of the license in /doc/license.txt$ */ +var Polygon = Class.extend({ + init : function(options) { + this.options = $.extend({}, this.options, options); + if (options.polygon) { + this.polygon = options.polygon; + } else { + this.polygon = createGoogleCirclePolygon(options); + } + this.hide(); + this.registerEvents(); + }, + options : { + map : null, + icon : null, + position : null, + content : null + }, + addToMap : function() { + this.polygon.setMap(this.options.map); + this.registerEvents(); + }, + removeFromMap : function() { + this.polygon.setMap(null); + this.unregisterEvents(); + }, + show : function() { + this.polygon.setMap(this.options.map); + }, + hide : function() { + this.polygon.setMap(null); + }, + setIcon : function(icon) { + }, + setZIndex: function(zIndex){ + this.polygon.zIndex = zIndex; + }, + setTitle : function(title) { + this.polygon.title = title; + }, + registerEvents : function() { + var handlers = new Array(); + var polygon = this.polygon; + handlers.push(addClickListener(polygon, function() { + updateIFrame(this.url); + })); + this.handlers = handlers; + }, + unregisterEvents : function() { + removeListeners(this.handlers); + this.handlers = null; + } +}); \ No newline at end of file diff --git a/productMods/js/visualization/mapofscience/SizeCoding.js b/productMods/js/visualization/mapofscience/SizeCoding.js new file mode 100644 index 00000000..83f79044 --- /dev/null +++ b/productMods/js/visualization/mapofscience/SizeCoding.js @@ -0,0 +1,76 @@ +/* $This file is distributed under the terms of the license in /doc/license.txt$ */ +/** + * The scaler is used for scaling based on the predefined minimum value and + * maximum value. You also can control the returned maximum scale and minimum + * scale. + */ +var Scaler = Class.extend({ + init: function(options) { + this.options = $.extend({}, this.options, options); + }, + options: { + scaleFunc: ReallySimpleAreaScale, + minValue: 0.0, + maxValue: 0.0, + minScale: 0.0, + maxScale: 1.0 + }, + getScale: function(value) { + var o = this.options; + var scale = o.scaleFunc(value, o.minValue, o.maxValue, o.minScale, o.maxScale); + if (scale > o.maxScale) { + scale = maxScale; + } else if (scale < o.minScale) { + scale = minScale; + } + return scale; + } +}); + +/* Scaling that ignore minScale and maxScale */ +function ReallySimpleAreaScale(value, minValue, maxValue, minScale, maxScale) { + return maxScale * Math.sqrt(value / maxValue); +} + +/* Scaling that cares about minScale and maxScale */ +function SimpleAreaScale(value, minValue, maxValue, minScale, maxScale) { + if (maxValue != minValue) { + var scale = minScale; + if (value > minValue) { + var valueDiff = maxValue - minValue; + var areaScale = value / valueDiff; + scale = Math.sqrt(areaScale); + } + return scale; + } else { + return maxScale; + } +} + +/** + * SizeCoder use scaler to scale its interested size based on the given + * scaler strategy. + */ +var CircleSizeCoder = Class.extend({ + init: function(options) { + this.options = $.extend({}, this.options, options); + }, + options: { + minRadius: 100000.0, + maxRadius: 2500000.0,//2500000.0, + scaler: new Scaler({}) + }, + getSize: function(value) { + var o = this.options; + var radius = o.scaler.getScale(value) * o.maxRadius; + + if (radius < o.minRadius) { + radius = o.minRadius; + } else if (radius > o.maxRadius) { + radius = o.maxRadius; + } + + return radius; + } +}); + diff --git a/productMods/js/visualization/mapofscience/VisCommonControl.js b/productMods/js/visualization/mapofscience/VisCommonControl.js new file mode 100644 index 00000000..adc08a1c --- /dev/null +++ b/productMods/js/visualization/mapofscience/VisCommonControl.js @@ -0,0 +1,59 @@ +/* $This file is distributed under the terms of the license in /doc/license.txt$ */ +function switchMarkerManager(id) { + + markerManager = getMarkerManager(id); + if(isActiveMarkerManager(markerManager)) { + markerManager.addAllToMap(); + + if(activeMarkerManager) { + activeMarkerManager.removeAllFromMap(); + } + + /* switch to target marker manager */ + activeMarkerManager = markerManager; + } +} + +function isActiveVisMode(visMode) { + return (currentVisMode == visMode); +} + +function getVisModeController(visMode){ + return visModeControllers[visMode]; +} + +function switchVisMode(visMode) { + if (currentVisMode != visMode) { + currentVisMode = visMode; + if (currentController) { + currentController.cleanView(); + } + currentController = getVisModeController(visMode); + currentController.initView(); + } + return +} + +function loadMarkers(visMode, url, sync) { + + // Download data from server and add to markerManager if not gotten already + var controller = getVisModeController(visMode); + if (controller.needLoaded()) { + if (sync) { + downloader.downloadAndWait(url, function(data) { + loadJSONToMarkerManager(data, visMode); + }); + } else { + downloader.download(url, function(data) { + loadJSONToMarkerManager(data, visMode); + }); + } + } // end if +} + +function loadJSONToMarkerManager(data, visMode) { + if (data) { + var controller = getVisModeController(visMode); + controller.loadJsonData(data[0]); + } +} diff --git a/productMods/js/visualization/mapofscience/VisModeControllers.js b/productMods/js/visualization/mapofscience/VisModeControllers.js new file mode 100644 index 00000000..3a68408e --- /dev/null +++ b/productMods/js/visualization/mapofscience/VisModeControllers.js @@ -0,0 +1,89 @@ +/* $This file is distributed under the terms of the license in /doc/license.txt$ */ +var ENTITY_VIS_MODE = "ENTITY"; + +var EntityVisModeController = Class.extend({ + init: function(map) { + this.keyToMarkerManagers = {}; + this.activeManager = null; + this.visMode = ENTITY_VIS_MODE; + this.isUnloaded = true; + this.map = map; + this.initMarkerManagers(map); + }, + initMarkerManagers: function(map) { + var managers = this.keyToMarkerManagers; + + // Create discipline Marker Manager + managers['discipline'] = new DisciplineMarkerManager( + map, + new DisciplineColorStrategy(), + null + ); + + // Create subdiscipline Marker Manager + managers['subdiscipline'] = new SubdisciplineMarkerManager( + map, + new SubdisciplineColorStrategy(), + null + ); + }, + initView: function(){ + this.show('subdiscipline'); + }, + needLoaded: function(){ + return this.isUnloaded; + }, + loadJsonData: function(data) { + var me = this; + me.uri = data.uri; + me.label = data.label; + me.pubsWithNoJournals = data.pubsWithNoJournals; + me.pubsWithInvalidJournals = data.pubsWithInvalidJournals; + me.pubsMapped = data.pubsMapped; + + $.each(this.keyToMarkerManagers, function(key, manager) { + // Need to create the AreaSizeCoding function + manager.setSizeCoder(new CircleSizeCoder({ + scaler: new Scaler({ maxValue: me.pubsMapped }) + })); + //markerManager.setSiseCodingFunction(new AreaSizeCoding(0, data.pubsMapped)); + $.each(data.subdisciplineActivity, function(subdiscipline, density) { + + // Create marker and add it to manager + var marker = manager.createMarker(subdiscipline, density); + + if (isActiveVisMode(me.visMode) && manager == me.activeManager) { + marker.show(); + } + }); // end each subdisciplineActivity + }); // end each markerManagers + + this.isUnloaded = false; + }, + getMarkerManager: function(key) { + return this.keyToMarkerManagers[key]; + }, + hasKey: function(key) { + return (this.keyToMarkerManagers.hasOwnProperty(key)); + }, + show: function(key) { + var manager = this.getMarkerManager(key); + var activeManager = this.activeManager; + if (activeManager != manager) { + this.cleanUp(); + manager.addMarkersToMap(); + } + this.activeManager = manager; + }, + hide: function(key) { + var manager = this.getMarkerManager(key); + if (this.activeManager == manager) { + this.cleanup(); + } + }, + cleanUp: function() { + if (this.activeManager) { + this.activeManager.removeMarkersFromMap(); + } + } +}); \ No newline at end of file diff --git a/productMods/templates/freemarker/visualization/mapOfScience/index.html b/productMods/templates/freemarker/visualization/mapOfScience/index.html new file mode 100644 index 00000000..6a8d4941 --- /dev/null +++ b/productMods/templates/freemarker/visualization/mapOfScience/index.html @@ -0,0 +1,26 @@ + + + + +Scimap + + + + + + + + + + + + + + + + + + +
+ + diff --git a/productMods/templates/freemarker/visualization/mapOfScience/mapOfScienceSetup.ftl b/productMods/templates/freemarker/visualization/mapOfScience/mapOfScienceSetup.ftl index b33450af..ba803fc3 100644 --- a/productMods/templates/freemarker/visualization/mapOfScience/mapOfScienceSetup.ftl +++ b/productMods/templates/freemarker/visualization/mapOfScience/mapOfScienceSetup.ftl @@ -5,22 +5,34 @@ <#assign dataVisualizationURLRoot ="/visualizationData"> <#assign shortVisualizationURLRoot ="/vis"> -<#assign organizationURI ="${organizationURI?url}"> -<#assign organizationVivoProfileURL = "${urls.base}/individual?uri=${organizationURI}"> +<#assign entityURI ="${entityURI?url}"> +<#assign entityVivoProfileURL = "${urls.base}/individual?uri=${entityURI}"> -<#assign subOrganizationVivoProfileURL = "${urls.base}/individual?"> +<#assign mapOfScienceVisParam = "map-of-science"> -<#assign subOrganizationMapOfScienceCommonURL = "${urls.base}${shortVisualizationURLRoot}/map-of-science/"> +<#assign subEntityVivoProfileURL = "${urls.base}/individual?"> + +<#assign subEntityMapOfScienceCommonURL = "${urls.base}${shortVisualizationURLRoot}/${mapOfScienceVisParam}/"> -<#if organizationLocalName?has_content > +<#if entityLocalName?has_content > - <#assign organizationMapOfScienceURL = "${urls.base}${shortVisualizationURLRoot}/map-of-science/${organizationLocalName}"> + <#assign entityMapOfScienceURL = "${urls.base}${shortVisualizationURLRoot}/${mapOfScienceVisParam}/${entityLocalName}"> <#else> - <#assign organizationMapOfScienceURL = '${urls.base}${shortVisualizationURLRoot}/map-of-science/?uri=${organizationURI}'> + <#assign entityMapOfScienceURL = '${urls.base}${shortVisualizationURLRoot}/${mapOfScienceVisParam}/?uri=${entityURI}'> -<#assign organizationMapOfScienceDataURL = "${urls.base}${dataVisualizationURLRoot}?vis=map-of-science&uri=${organizationURI}&vis_mode=json"> \ No newline at end of file +<#assign entityMapOfScienceDataURL = "${urls.base}${dataVisualizationURLRoot}?vis=${mapOfScienceVisParam}&uri=${entityURI}&output=json"> + + + diff --git a/productMods/templates/freemarker/visualization/mapOfScience/mapOfScienceStandalone.ftl b/productMods/templates/freemarker/visualization/mapOfScience/mapOfScienceStandalone.ftl index a806e67b..27a67ab7 100644 --- a/productMods/templates/freemarker/visualization/mapOfScience/mapOfScienceStandalone.ftl +++ b/productMods/templates/freemarker/visualization/mapOfScience/mapOfScienceStandalone.ftl @@ -4,35 +4,28 @@ corresponding changes in the included Templates. --> -<#include "scienceMapSetup.ftl"> +<#include "mapOfScienceSetup.ftl"> -', + '', + '', + '', + '', + '', + '', + '', + '', + '', + '', + '', + '', + '', + '', + '')} -$(document).ready(function() { +<#-- CSS files --> -var scienceMapDataURL = "${organizationMapOfScienceDataURL}"; +${stylesheets.add('', + '')} - - $.ajax({ - url: scienceMapDataURL - dataType: "json", - timeout: 5 * 60 * 1000, - success: function (data) { - - if (data.error) { - - alert("error"); - alert(data); - - } else { - - alert("success"); - alert(data); - - } - } - }); - -}); - - \ No newline at end of file +
\ No newline at end of file diff --git a/productMods/templates/freemarker/visualization/mapOfScience/sampleData.json b/productMods/templates/freemarker/visualization/mapOfScience/sampleData.json new file mode 100644 index 00000000..2e3cc9fc --- /dev/null +++ b/productMods/templates/freemarker/visualization/mapOfScience/sampleData.json @@ -0,0 +1,1060 @@ +[ + { + "uri":"http://vivo.ufl.edu/individual/UniversityofFlorida", + "label":"University of Florida", + "type":"ORGANIZATION", + "pubsMapped":487, + "pubsWithNoJournals":2428, + "pubsWithInvalidJournals":431, + "subdisciplineActivity":{ + "1":12.556484, + "551":2.051282, + "2":8.474287, + "548":0.051282022, + "3":0.16249998, + "4":13.077053, + "544":0.012500009, + "6":7.4033594, + "7":4.2650557, + "8":2.0587068, + "9":1.3111172, + "10":0.6561821, + "11":1.2087067, + "12":1.3576288, + "13":3.0025544, + "15":1.1106142, + "17":1.2312467, + "16":4.3291583, + "19":1.3576288, + "18":10.91324, + "21":3.382149, + "20":3.3839447, + 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W","type":"PERSON","pubs":0},{"uri":"http://vivo.ufl.edu/individual/CollegeofVeterinaryMedicine","label":"College of Veterinary Medicine","type":"ORGANIZATION","pubs":150},{"uri":"http://vivo.ufl.edu/individual/CollegeofDentistry","label":"College of Dentistry","type":"ORGANIZATION","pubs":220},{"uri":"http://vivo.ufl.edu/individual/n47639","label":"Neumann,Pamela A","type":"PERSON","pubs":0},{"uri":"http://vivo.ufl.edu/individual/CollegeofMedicine","label":"College of Medicine","type":"ORGANIZATION","pubs":1684},{"uri":"http://vivo.ufl.edu/individual/n13285","label":"Mcclain,Emily Rose Tuttle","type":"PERSON","pubs":0},{"uri":"http://vivo.ufl.edu/individual/CollegeofPharmacy","label":"College of Pharmacy","type":"ORGANIZATION","pubs":329},{"uri":"http://vivo.ufl.edu/individual/n25893","label":"Hoidalen,Dale M","type":"PERSON","pubs":0},{"uri":"http://vivo.ufl.edu/individual/n18866","label":"Center for Mammalian Genetics (CMG)","type":"ORGANIZATION","pubs":3},{"uri":"http://vivo.ufl.edu/individual/n26666","label":"Gresser,Marilyn E","type":"PERSON","pubs":0},{"uri":"http://vivo.ufl.edu/individual/individual1203093063","label":"Public Health","type":"ORGANIZATION","pubs":0},{"uri":"http://vivo.ufl.edu/individual/n1814","label":"Crary,Michael A","type":"PERSON","pubs":6},{"uri":"http://vivo.ufl.edu/individual/n2366","label":"Colburn,Michelle Walton","type":"PERSON","pubs":0},{"uri":"http://vivo.ufl.edu/individual/CollegeofNursing","label":"College of Nursing","type":"ORGANIZATION","pubs":38}]}] \ No newline at end of file diff --git a/src/edu/cornell/mannlib/vitro/webapp/controller/visualization/VisualizationFrameworkConstants.java b/src/edu/cornell/mannlib/vitro/webapp/controller/visualization/VisualizationFrameworkConstants.java index 8289d4be..a4b9182d 100644 --- a/src/edu/cornell/mannlib/vitro/webapp/controller/visualization/VisualizationFrameworkConstants.java +++ b/src/edu/cornell/mannlib/vitro/webapp/controller/visualization/VisualizationFrameworkConstants.java @@ -52,6 +52,7 @@ public class VisualizationFrameworkConstants { public static final String INDIVIDUAL_URI_KEY = "uri"; public static final String VIS_MODE_KEY = "vis_mode"; public static final String RENDER_MODE_KEY = "render_mode"; + public static final String OUTPUT_FORMAT_KEY = "output"; /* * These values represent possible render modes. @@ -121,7 +122,9 @@ public class VisualizationFrameworkConstants { /* - * These values represent possible vis-modes for temporal graph vis + * These values represent possible data serialization formats corresponding to + * output format key. * */ - public static final String TEMPORAL_GRAPH_JSON_DATA_VIS_MODE = "json"; + public static final String JSON_OUTPUT_FORMAT = "json"; + public static final String CSV_OUTPUT_FORMAT = "csv"; } diff --git a/src/edu/cornell/mannlib/vitro/webapp/visualization/constants/MapOfScienceConstants.java b/src/edu/cornell/mannlib/vitro/webapp/visualization/constants/MapOfScienceConstants.java new file mode 100644 index 00000000..dab888fc --- /dev/null +++ b/src/edu/cornell/mannlib/vitro/webapp/visualization/constants/MapOfScienceConstants.java @@ -0,0 +1,1145 @@ +/* $This file is distributed under the terms of the license in /doc/license.txt$ */ + +package edu.cornell.mannlib.vitro.webapp.visualization.constants; + +import java.util.HashMap; +import java.util.Map; + +/** + * This contains the constants related to map of science visualization. + * @author cdtank + */ +@SuppressWarnings("serial") +public class MapOfScienceConstants { + + public static final Map DISCIPLINE_ID_TO_LABEL = new HashMap() {{ + put(1, "Health Professionals"); + put(2, "Chemistry"); + put(3, "Social Sciences"); + put(4, "Humanities"); + put(5, "Brain Research"); + put(6, "Medical Specialties"); + put(7, "Infectious Diseases"); + put(8, "Biotechnology"); + put(9, "Biology"); + put(10, "Earth Sciences"); + put(11, "Chemical, Mechanical, & Civil Engineering"); + put(12, "Math & Physics"); + put(13, "Electrical Engineering & Computer Science"); + }}; + + + public static final Map SUB_DISCIPLINE_ID_TO_LABEL = new HashMap() {{ + put(1, "Clinical Cancer Research"); + put(2, "Circulation"); + put(3, "Data Mining"); + put(4, "Protein Science"); + put(5, "Signal Processing"); + put(6, "Neuroscience; Molecular & Cellular"); + put(7, "Anesthetics & Analgesics"); + put(8, "Urology"); + put(9, "Immunology"); + put(10, "Macromolecules & Polymers"); + put(11, "Affective Disorders"); + put(12, "Oncology"); + put(13, "Surface Science"); + put(14, "Nonlinear Analysis"); + put(15, "Hospital Financial Management"); + put(16, "Rheumatology"); + put(17, "Occupational Health"); + put(18, "Organic Chemistry"); + put(19, "Leukemia"); + put(20, "Virology"); + put(21, "Plant Physiology"); + put(22, "Allergy & Clinical Immunology"); + put(23, "Material Science"); + put(24, "Dermatology"); + put(25, "Kidney"); + put(26, "Pharmacology Science"); + put(27, "Law"); + put(28, "Medical Imaging"); + put(29, "Bacteriology"); + put(30, "Marine Biology"); + put(31, "Developmental Biology"); + put(32, "Digestion"); + put(33, "Toxicology Applied Pharmacology"); + put(34, "Transportation Research"); + put(35, "Inorganic Chemistry"); + put(36, "Chemical Engineering"); + put(37, "Pharmaceutical Research"); + put(38, "Semiconducting Materials"); + put(39, "Diabetes Care"); + put(40, "Clinical Neurophysiology"); + put(41, "Opthomology"); + put(42, "Nutrition"); + put(43, "Finance"); + put(44, "Neurosurgery"); + put(45, "Fertility"); + put(46, "Applied Optics"); + put(47, "Nuclear Engineering"); + put(48, "Molecular Cell Biology"); + put(49, "Food Chemistry"); + put(50, "Obstectrics"); + put(51, "Chest & Respiratory"); + put(52, "Earthquake Engineering"); + put(53, "Zoology"); + put(54, "Pharmaceutical Design"); + put(55, "AntiMicrobial Agents"); + put(56, "Systems Software"); + put(57, "Decision Support Systems"); + put(58, "Business Ethics"); + put(59, "Vascular Surgery"); + put(60, "Pulp & Paper"); + put(61, "Seismology"); + put(62, "Bone Joint Surgery"); + put(63, "Neurology"); + put(64, "Algebra"); + put(65, "Antenna"); + put(66, "Circuit Systems"); + put(67, "Nursing Specialists"); + put(68, "Retinal Surgery"); + put(69, "Psychopharmacology"); + put(70, "Aeronautics & Astronautics"); + put(71, "Psychoanalysis"); + put(72, "Oceanography"); + put(73, "Sports Medicine"); + put(74, "Operations Research"); + put(75, "Chromatography; Electrophoresis"); + put(76, "Pediatrics"); + put(77, "Cardiovascular"); + put(78, "Paleobiology"); + put(79, "Economics"); + put(80, "Hypertension"); + put(81, "Human Molecular Genetics"); + put(82, "Clinical Endocrinology"); + put(83, "Dietetics"); + put(84, "Clinical Microbiology"); + put(85, "Hospital Pharmacy"); + put(86, "Gas Turbines"); + put(87, "Remote Sensing"); + put(88, "Computational Chemistry"); + put(89, "Surgery"); + put(90, "Ceramics"); + put(91, "AIDS"); + put(92, "Military Aviation"); + put(93, "Medical Records"); + put(94, "Statistics"); + put(95, "Applied Economics"); + put(96, "Automatic Control"); + put(97, "Atmospheric Science"); + put(98, "Automotive Engineering"); + put(99, "BioStatistics"); + put(100, "Employee Health Benefit Plans"); + put(101, "Transplantation"); + put(102, "Alloys"); + put(103, "Astronomy & Astrophysics"); + put(104, "Substance-abuse Treatment"); + put(105, "Research Policy; Technology Management"); + put(106, "Drug Discovery"); + put(107, "Animal Science"); + put(108, "Chaos Fractals & Complexity"); + put(109, "Environmental Contamination"); + put(110, "Otolaryngology; Laryngoscope"); + put(111, "Mechanical Design Engineering"); + put(112, "Classics"); + put(113, "Biological Conservation"); + put(114, "Thoracic Surgery"); + put(115, "Phytochemistry"); + put(116, "Tropical Medicine"); + put(117, "Food Protection"); + put(118, "Broadband Communication"); + put(119, "Energy Fuel"); + put(120, "Soil Quality"); + put(121, "Integrated Circuit Design"); + put(122, "Philosophy Psychology"); + put(123, "Construction & Project Management"); + put(124, "Social Psychology"); + put(125, "High Energy Physics"); + put(126, "Strategic Management"); + put(127, "Genomics & Nucleic Acids"); + put(128, "Heat Transfer"); + put(129, "Cement & Concrete"); + put(130, "Pathology"); + put(131, "Pest Management Science"); + put(132, "Corrosion"); + put(133, "Veterinary Science"); + put(134, "Teacher Education; Evaluation"); + put(135, "Stem Cells"); + put(136, "Image Processing"); + put(137, "Neural Networks"); + put(138, "Nursing Education"); + put(139, "Intensive Care"); + put(140, "Alternative Complementary Medicine"); + put(141, "Petroleum Engineering"); + put(142, "Music & Theatre"); + put(143, "Memory & Cognition"); + put(144, "Vision"); + put(145, "Communication Research"); + put(146, "BioInformatics"); + put(147, "Mechanics of Solids & Structures"); + put(148, "Pharmacy"); + put(149, "Geomorphology"); + put(150, "Psychosis; Schizophrenia"); + put(151, "BioEthics"); + put(152, "Parellel Computing"); + put(153, "Power Distribution"); + put(154, "Gerontology"); + put(155, "Wood"); + put(156, "Discrete Applied Mathematics"); + put(157, "Geology & Tectonics"); + put(158, "GeoChemistry"); + put(159, "Mobil Networks"); + put(160, "Artificial Intelligence"); + put(161, "Electro Analytical Chemistry"); + put(162, "Dental Education"); + put(163, "Enzyme Microbiological Techniques"); + put(164, "Library Science; Infomation Retrieval"); + put(165, "Biomaterials"); + put(166, "Quaternary Research"); + put(167, "Endoscopy"); + put(168, "Composites"); + put(169, "Language Learning"); + put(170, "History; Gender Studies"); + put(171, "Leadership & Organizational Behavior"); + put(172, "Agricultural Engineering"); + put(173, "Computer-Aided Process Planning"); + put(174, "Geriatrics"); + put(175, "Solid State Electronics"); + put(176, "Optics & Lasers"); + put(177, "Wool"); + put(178, "Biomechanics"); + put(179, "Molecular Physics"); + put(180, "Comparative Animal Physiology"); + put(181, "Political Science"); + put(182, "History Philosophy"); + put(183, "Poetry"); + put(184, "Nuclear Medicine"); + put(185, "Nanotechnology"); + put(186, "Speech Recognitation"); + put(187, "Fluid Mechanics"); + put(188, "Computer Graphics"); + put(189, "Filtration Membrane"); + put(190, "Clinical Infectious Disease"); + put(191, "Prosthetic Dentistry"); + put(192, "Orthodontics"); + put(193, "Robotic Systems"); + put(194, "Dental Research"); + put(195, "Atomic Spectrometry"); + put(196, "Botany"); + put(197, "Public Health Service"); + put(198, "Political Geography"); + put(199, "Catalysis"); + put(200, "Radiation Protection"); + put(201, "Machine Tools"); + put(202, "Veterinary Medicine"); + put(203, "Periodontology"); + put(204, "Birth Defects"); + put(205, "Thrombosis"); + put(206, "Freshwater Biology"); + put(207, "Mental Health Nursing"); + put(208, "Artificial Evolution"); + put(209, "English Literature"); + put(210, "Plastic Surgery"); + put(211, "Nursing Administration"); + put(212, "Higher Education"); + put(213, "Ecology"); + put(214, "Modern Language"); + put(215, "Neurophsyiology & Neuroscience"); + put(216, "Mining"); + put(217, "Aquaculture"); + put(218, "Molecular Biological Evolution"); + put(219, "Photonics"); + put(220, "Urban Studies"); + put(221, "Functional Analysis"); + put(222, "Linguistics"); + put(223, "Photo-Optics"); + put(224, "Spine"); + put(225, "Robotics"); + put(226, "Audiology"); + put(227, "Soil Science"); + put(228, "Simulation"); + put(229, "Nuclear Instrumentation"); + put(230, "Hispanic Studies"); + put(231, "Forest Science"); + put(232, "Plasma Physics"); + put(233, "Proteomics"); + put(234, "Symbolic Interaction"); + put(235, "Child & Adolescent Psychiatry"); + put(236, "General Practice"); + put(237, "Environmental Management"); + put(238, "Diabetes Metabolism"); + put(239, "Geotechnical Engineering"); + put(240, "Instrumentation"); + put(241, "Clinical Chemistry"); + put(242, "Fluid Engineering"); + put(243, "Arthroscopy"); + put(244, "Eating Disorders; Sex Roles"); + put(245, "Water Quality & Resource Management"); + put(246, "Ethnic Migration"); + put(247, "Geriatric Psychiatry"); + put(248, "Sound & Vibration"); + put(249, "Ore Processing"); + put(250, "Ethnology"); + put(251, "Prenatal Diagnostics"); + put(252, "Cancer (translated)"); + put(253, "Dialectics"); + put(254, "Atmospheric GeoPhysics"); + put(255, "Flavors & Fragrance"); + put(256, "Numerical Methods in Engineering"); + put(257, "EthnoPharmcology"); + put(258, "Electrocardiography"); + put(259, "International Development"); + put(260, "Electrochemistry"); + put(261, "Political Studies"); + put(262, "Molecular Endocrinology"); + put(263, "Surface Coating Technology"); + put(264, "Molecular Biochemical Parasitology"); + put(265, "Vocational Counseling"); + put(266, "Oil & Natural Gas"); + put(267, "International Conflict"); + put(268, "Art History"); + put(269, "Applied Catalysis"); + put(270, "Agricultural Economics"); + put(271, "Social Work"); + put(272, "Medical Insurance"); + put(273, "Fluid Phase Equilibrium"); + put(274, "Biotechnology Trends"); + put(275, "Air Quality"); + put(276, "Search Engines; Web Crawling"); + put(277, "Colloid"); + put(278, "Applied Physiology; Muscle"); + put(279, "Biblical Literature"); + put(280, "Fault Tolerant Computing"); + put(281, "Third World Political Economics"); + put(282, "Public Hospitals"); + put(283, "Sociology"); + put(284, "Horticulture"); + put(285, "Bone & Osteoporosis"); + put(286, "Radiation Therapy"); + put(287, "Water Treatment"); + put(288, "Spyware; Malware"); + put(289, "Behavioral Research Therapy"); + put(290, "Science Education"); + put(291, "Design & Analysis of Algorithms"); + put(292, "Hospice Care"); + put(293, "Climatology"); + put(294, "Crop Science"); + put(295, "Fuzzy Sets"); + put(296, "Vehicle System Design"); + put(297, "Transfusion"); + put(298, "AIDS Treatment"); + put(299, "Wireless Communication"); + put(300, "Atherosclerosis"); + put(301, "Region & Medical Ethids"); + put(302, "Speech Language & Hearing"); + put(303, "Thoracic & Respiratory"); + put(304, "Veterinary Microbiology"); + put(305, "Environmental Protection"); + put(306, "Computer Systems Design"); + put(307, "Environmental Polution"); + put(308, "Electrical Networks"); + put(309, "Endoscopy"); + put(310, "Chemistry & Material Science"); + put(311, "Medical Screening & Epidemiology"); + put(312, "Child Develomoent"); + put(313, "Pain"); + put(314, "Public Administration"); + put(315, "Soil Analysis"); + put(316, "Safety Management"); + put(317, "Pattern Recognition"); + put(318, "Mental Health Assessment"); + put(319, "Clinical Medicine (translated)"); + put(320, "Mutation; DNA Repair"); + put(321, "Human Evolution"); + put(322, "Space Research"); + put(323, "Entomology"); + put(324, "Epilepsy"); + put(325, "Plant Ecology"); + put(326, "Computer Aided Molecular Design"); + put(327, "Criminology"); + put(328, "Forensic Psychiatry"); + put(329, "Personality"); + put(330, "Test Equipment"); + put(331, "Logic"); + put(332, "Pulp Paper Science"); + put(333, "Textiles"); + put(334, "Contemporary Philosophy"); + put(335, "Hydrology Soil Contamination"); + put(336, "Child Abuse"); + put(337, "Mathematics Research"); + put(338, "Geology (International)"); + put(339, "Environmental Chemistry"); + put(340, "Parasitology"); + put(341, "Dairy Science"); + put(342, "Water Policy"); + put(343, "Fish Research"); + put(344, "Printing"); + put(345, "Genetics"); + put(346, "Industrial Chemistry"); + put(347, "Obesity"); + put(348, "Literary Criticism"); + put(349, "Hepatology"); + put(350, "Physical Therapy; Brain Injury"); + put(351, "Computational& Applied Math"); + put(352, "World Health Organization"); + put(353, "Geophysical Science"); + put(354, "Forensic Medicine"); + put(355, "Psychiatric Services"); + put(356, "Software Design and Development"); + put(357, "Wildlife Management"); + put(358, "Ocean Coastal Management"); + put(359, "Database Design & Management"); + put(360, "Financial Accounting"); + put(361, "Microbiology Biotechnology"); + put(362, "Water Utilities"); + put(363, "Sedimentary Geology"); + put(364, "Giodesy"); + put(365, "Surfactants"); + put(366, "Eye"); + put(367, "Addictive Behavior"); + put(368, "Naval Architecture"); + put(369, "Environmental Microbiology"); + put(370, "Electronic Imaging"); + put(371, "Functional Programing"); + put(372, "Applied Genetics"); + put(373, "Plant Disease"); + put(374, "Water Resource"); + put(375, "Developmental Economics"); + put(376, "Nuclear Physics"); + put(377, "International Economics"); + put(378, "Radiology"); + put(379, "German Studies"); + put(380, "Medieval History"); + put(381, "Philosophy of Education"); + put(382, "Oceanographic Instrumentation"); + put(383, "Foreign Policy"); + put(384, "Gut"); + put(385, "Microwaves; Radio Frequencies"); + put(386, "School Psychology"); + put(387, "Vaccines"); + put(388, "Environmental Law"); + put(389, "Mass Spectrometry"); + put(390, "Psychiatric Nursing"); + put(391, "Asian Studies"); + put(392, "Optimization Theory"); + put(393, "Mathematical Science (Russia)"); + put(394, "Gene Therapy"); + put(395, "Security; Cryptography"); + put(396, "Materials Processing"); + put(397, "Rural Health Care"); + put(398, "Power Systems"); + put(399, "Surgical Oncology"); + put(400, "Chip Design & Manufacturing"); + put(401, "Sociobiology"); + put(402, "Molecular Medicine"); + put(403, "Human Resource Management"); + put(404, "Ecological Modeling"); + put(405, "Clinical Rehabilitation"); + put(406, "Metallurgy"); + put(407, "Ethics"); + put(408, "Marital & Family Therapy"); + put(409, "Aerospace"); + put(410, "Critical Studies"); + put(411, "Econometrics"); + put(412, "Neuroscience Methods"); + put(413, "Mineralogy"); + put(414, "Trauma"); + put(415, "Thermal Analysis"); + put(416, "Solar & Wind Power"); + put(417, "Ocean Engineering"); + put(418, "Educational Psychology"); + put(419, "Mycology"); + put(420, "Semiotics"); + put(421, "Dyes & Pigments"); + put(422, "Drug Safety"); + put(423, "Molecular Ecology"); + put(424, "Cytogentics & Genome Mapping"); + put(425, "Clinical Psychiatry"); + put(426, "Paleogeography"); + put(427, "Water Waste"); + put(428, "Computer Networks"); + put(429, "Weed Management"); + put(430, "User Interface Design"); + put(431, "Public Policy"); + put(432, "Liquid Crystals"); + put(433, "Control Systems"); + put(434, "Environmental Policy"); + put(435, "Topology"); + put(436, "Construction"); + put(437, "Dams & Tunnels"); + put(438, "Regional Studies"); + put(439, "Electrochemical Development"); + put(440, "Digital Printing"); + put(441, "Peptides"); + put(442, "Applied Geophysics"); + put(443, "Sexually Transmitted Diseases"); + put(444, "Engineering Education"); + put(445, "NeuroImmunology"); + put(446, "Machine Learning"); + put(447, "Geratric Nursing"); + put(448, "Sensors & Actuators"); + put(449, "Systematics & Evolutionary Microbiology"); + put(450, "Image Processing"); + put(451, "Medical Education"); + put(452, "Magnetic Resonance Imagery"); + put(453, "Hospital Management"); + put(454, "Insect Physiology"); + put(455, "Power Transmission"); + put(456, "Food Engineering"); + put(457, "Oral Surgery"); + put(458, "Computer Systems Theory"); + put(459, "Combustion"); + put(460, "Dermatological Surgery"); + put(461, "Wildlife Research"); + put(462, "Midwifery"); + put(463, "Physics; Current Developments"); + put(464, "Pychiatric & Behavioral Genetics"); + put(465, "Fractures & Fatigue"); + put(466, "Emergency Medicine"); + put(467, "Cross Disciplinary Studies"); + put(468, "Archeological Science"); + put(469, "Preventive Medicine"); + put(470, "Carbon"); + put(471, "Gynecology Oncology"); + put(472, "Psychosomatic Medicine"); + put(473, "Pharmaco Economics"); + put(474, "Computer Modeling and Animation"); + put(475, "Medical Practice"); + put(476, "Cancer Statistics"); + put(477, "Consciousness"); + put(478, "Otolyngology; Head Neck"); + put(479, "Heart Failure; Catheters"); + put(480, "Wood & Wood Components"); + put(481, "Circuits"); + put(482, "Friction Lubrication & Wear"); + put(483, "Superconductor Science"); + put(484, "Antennae; Mobile Radio"); + put(485, "Headache"); + put(486, "Operations Management"); + put(487, "Fish Biology"); + put(488, "Economic & Human Biology"); + put(489, "Consumer Electronics"); + put(490, "Menopause"); + put(491, "Chemistry (Russia)"); + put(492, "GeoPolitics"); + put(493, "Glaciology"); + put(494, "Medical Libraries"); + put(495, "Opera"); + put(496, "Education"); + put(497, "Acoustics"); + put(498, "Pragmatics & Discourse"); + put(499, "Reproduction Veterinary"); + put(500, "Crystallography"); + put(501, "Applied Math & Computation"); + put(502, "Socio-Cultural Anthropology"); + put(503, "Poultry Science"); + put(504, "Artifical Organs"); + put(505, "Physical Therapy; Orthopedic"); + put(506, "Pulmonary"); + put(507, "Waste Management"); + put(508, "Marine Pollution"); + put(509, "Toxins"); + put(510, "Hearing Research"); + put(511, "Human Rights"); + put(512, "Lung Cancer"); + put(513, "Social Economics"); + put(514, "Carbohydrate Research"); + put(515, "Biotechnology Bioengineering"); + put(516, "Rural Studies"); + put(517, "Electronics"); + put(518, "Defects & Diffusion in Materials"); + put(519, "Forensic Science"); + put(520, "Rangeland Ecology"); + put(521, "Welding"); + put(522, "Reliability Engineering"); + put(523, "Molecular Biology Methods"); + put(524, "Mammals"); + put(525, "Impotence"); + put(526, "Fuzzy Logic"); + put(527, "Tourism"); + put(528, "Aquatic Disease"); + put(529, "Geographic Information Science"); + put(530, "Hormone Research"); + put(531, "Public Health"); + put(532, "Sleep"); + put(533, "Neurotoxicology"); + put(534, "Pediatric Research"); + put(535, "Education Psychological Measures"); + put(536, "Marketing"); + put(537, "Clinical Medicine (Romania)"); + put(538, "Green Chemistry"); + put(539, "Optometry"); + put(540, "Textile Art"); + put(541, "Italian Studies"); + put(542, "Perception Motor Skills"); + put(543, "World Trade; Law"); + put(544, "Insects"); + put(545, "Australian Ecology"); + put(546, "Paints & Coatings"); + put(547, "Nursing Theory"); + put(548, "Crustaceans"); + put(549, "Laser Surgery"); + put(550, "Bulk Solid Handling"); + put(551, "Wetlands"); + put(552, "GIS (non English)"); + put(553, "Power Transmission & Control"); + put(554, "Agricultural Environmental Medicine"); + }}; + + public static final Map SUB_DISCIPLINE_ID_TO_DISCIPLINE_ID = new HashMap() {{ + put(1, 7); + put(2, 6); + put(3, 13); + put(4, 7); + put(5, 13); + put(6, 5); + put(7, 6); + put(8, 6); + put(9, 7); + put(10, 2); + put(11, 1); + put(12, 6); + put(13, 12); + put(14, 12); + put(15, 1); + put(16, 7); + put(17, 1); + put(18, 2); + put(19, 7); + put(20, 7); + put(21, 9); + put(22, 6); + put(23, 11); + put(24, 1); + put(25, 6); + put(26, 5); + put(27, 3); + put(28, 1); + put(29, 7); + put(30, 11); + put(31, 7); + put(32, 6); + put(33, 1); + put(34, 11); + put(35, 2); + put(36, 11); + put(37, 1); + put(38, 12); + put(39, 6); + put(40, 5); + put(41, 1); + put(42, 6); + put(43, 3); + put(44, 1); + put(45, 6); + put(46, 13); + put(47, 11); + put(48, 7); + put(49, 8); + put(50, 6); + put(51, 6); + put(52, 11); + put(53, 9); + put(54, 2); + put(55, 6); + put(56, 13); + put(57, 3); + put(58, 3); + put(59, 6); + put(60, 11); + put(61, 10); + put(62, 1); + put(63, 5); + put(64, 12); + put(65, 13); + put(66, 13); + put(67, 1); + put(68, 1); + put(69, 5); + put(70, 11); + put(71, 1); + put(72, 11); + put(73, 1); + put(74, 3); + put(75, 2); + put(76, 6); + put(77, 6); + put(78, 10); + put(79, 3); + put(80, 6); + put(81, 7); + put(82, 6); + put(83, 6); + put(84, 6); + put(85, 6); + put(86, 11); + put(87, 11); + put(88, 2); + put(89, 6); + put(90, 11); + put(91, 6); + put(92, 12); + put(93, 1); + put(94, 3); + put(95, 3); + put(96, 13); + put(97, 11); + put(98, 11); + put(99, 3); + put(100, 1); + put(101, 6); + put(102, 11); + put(103, 12); + put(104, 1); + put(105, 3); + put(106, 6); + put(107, 6); + put(108, 12); + put(109, 11); + put(110, 1); + put(111, 11); + put(112, 4); + put(113, 9); + put(114, 6); + put(115, 2); + put(116, 9); + put(117, 8); + put(118, 13); + put(119, 11); + put(120, 11); + put(121, 13); + put(122, 4); + put(123, 3); + put(124, 3); + put(125, 12); + put(126, 3); + put(127, 8); + put(128, 11); + put(129, 11); + put(130, 7); + put(131, 9); + put(132, 11); + put(133, 6); + put(134, 3); + put(135, 6); + put(136, 13); + put(137, 13); + put(138, 1); + put(139, 6); + put(140, 6); + put(141, 11); + put(142, 4); + put(143, 5); + put(144, 5); + put(145, 3); + put(146, 8); + put(147, 11); + put(148, 6); + put(149, 10); + put(150, 1); + put(151, 1); + put(152, 13); + put(153, 13); + put(154, 1); + put(155, 11); + put(156, 12); + put(157, 10); + put(158, 10); + put(159, 13); + put(160, 13); + put(161, 2); + put(162, 1); + put(163, 8); + put(164, 13); + put(165, 1); + put(166, 10); + put(167, 6); + put(168, 11); + put(169, 3); + put(170, 4); + put(171, 3); + put(172, 11); + put(173, 3); + put(174, 1); + put(175, 12); + put(176, 12); + put(177, 11); + put(178, 1); + put(179, 2); + put(180, 9); + put(181, 3); + put(182, 4); + put(183, 4); + put(184, 1); + put(185, 12); + put(186, 13); + put(187, 11); + put(188, 13); + put(189, 11); + put(190, 6); + put(191, 1); + put(192, 1); + put(193, 13); + put(194, 1); + put(195, 2); + put(196, 9); + put(197, 1); + put(198, 3); + put(199, 2); + put(200, 6); + put(201, 11); + put(202, 6); + put(203, 1); + put(204, 7); + put(205, 6); + put(206, 9); + put(207, 1); + put(208, 13); + put(209, 4); + put(210, 1); + put(211, 1); + put(212, 3); + put(213, 9); + put(214, 4); + put(215, 5); + put(216, 11); + put(217, 9); + put(218, 9); + put(219, 13); + put(220, 3); + put(221, 12); + put(222, 4); + put(223, 11); + put(224, 1); + put(225, 13); + put(226, 1); + put(227, 11); + put(228, 12); + put(229, 12); + put(230, 4); + put(231, 9); + put(232, 12); + put(233, 8); + put(234, 3); + put(235, 3); + put(236, 1); + put(237, 3); + put(238, 6); + put(239, 11); + put(240, 13); + put(241, 6); + put(242, 11); + put(243, 1); + put(244, 3); + put(245, 11); + put(246, 3); + put(247, 1); + put(248, 11); + put(249, 11); + put(250, 3); + put(251, 6); + put(252, 6); + put(253, 13); + put(254, 11); + put(255, 2); + put(256, 11); + put(257, 2); + put(258, 6); + put(259, 3); + put(260, 11); + put(261, 3); + put(262, 6); + put(263, 12); + put(264, 9); + put(265, 3); + put(266, 11); + put(267, 3); + put(268, 4); + put(269, 2); + put(270, 3); + put(271, 3); + put(272, 1); + put(273, 11); + put(274, 8); + put(275, 11); + put(276, 13); + put(277, 2); + put(278, 1); + put(279, 4); + put(280, 13); + put(281, 3); + put(282, 1); + put(283, 3); + put(284, 9); + put(285, 6); + put(286, 6); + put(287, 11); + put(288, 13); + put(289, 1); + put(290, 3); + put(291, 12); + put(292, 6); + put(293, 11); + put(294, 9); + put(295, 13); + put(296, 11); + put(297, 7); + put(298, 1); + put(299, 13); + put(300, 6); + put(301, 1); + put(302, 5); + put(303, 6); + put(304, 6); + put(305, 11); + put(306, 13); + put(307, 11); + put(308, 13); + put(309, 6); + put(310, 2); + put(311, 6); + put(312, 3); + put(313, 6); + put(314, 3); + put(315, 11); + put(316, 11); + put(317, 13); + put(318, 1); + put(319, 6); + put(320, 7); + put(321, 9); + put(322, 12); + put(323, 9); + put(324, 5); + put(325, 9); + put(326, 2); + put(327, 3); + put(328, 3); + put(329, 3); + put(330, 13); + put(331, 13); + put(332, 11); + put(333, 11); + put(334, 4); + put(335, 11); + put(336, 3); + put(337, 12); + put(338, 10); + put(339, 2); + put(340, 9); + put(341, 6); + put(342, 11); + put(343, 11); + put(344, 11); + put(345, 9); + put(346, 11); + put(347, 6); + put(348, 4); + put(349, 6); + put(350, 5); + put(351, 12); + put(352, 9); + put(353, 12); + put(354, 1); + put(355, 1); + put(356, 13); + put(357, 9); + put(358, 11); + put(359, 13); + put(360, 3); + put(361, 8); + put(362, 11); + put(363, 10); + put(364, 11); + put(365, 2); + put(366, 1); + put(367, 1); + put(368, 12); + put(369, 11); + put(370, 13); + put(371, 13); + put(372, 9); + put(373, 9); + put(374, 11); + put(375, 3); + put(376, 12); + put(377, 3); + put(378, 6); + put(379, 4); + put(380, 4); + put(381, 4); + put(382, 11); + put(383, 3); + put(384, 6); + put(385, 13); + put(386, 3); + put(387, 7); + put(388, 3); + put(389, 8); + put(390, 1); + put(391, 4); + put(392, 12); + put(393, 12); + put(394, 7); + put(395, 13); + put(396, 11); + put(397, 1); + put(398, 13); + put(399, 6); + put(400, 13); + put(401, 9); + put(402, 1); + put(403, 3); + put(404, 9); + put(405, 6); + put(406, 11); + put(407, 4); + put(408, 3); + put(409, 12); + put(410, 4); + put(411, 3); + put(412, 5); + put(413, 10); + put(414, 1); + put(415, 2); + put(416, 11); + put(417, 11); + put(418, 3); + put(419, 9); + put(420, 4); + put(421, 11); + put(422, 6); + put(423, 9); + put(424, 7); + put(425, 1); + put(426, 10); + put(427, 11); + put(428, 13); + put(429, 11); + put(430, 13); + put(431, 3); + put(432, 2); + put(433, 13); + put(434, 3); + put(435, 12); + put(436, 11); + put(437, 11); + put(438, 3); + put(439, 11); + put(440, 11); + put(441, 7); + put(442, 11); + put(443, 6); + put(444, 3); + put(445, 5); + put(446, 13); + put(447, 1); + put(448, 11); + put(449, 8); + put(450, 13); + put(451, 1); + put(452, 1); + put(453, 1); + put(454, 9); + put(455, 13); + put(456, 8); + put(457, 1); + put(458, 13); + put(459, 11); + put(460, 1); + put(461, 9); + put(462, 1); + put(463, 12); + put(464, 3); + put(465, 11); + put(466, 6); + put(467, 4); + put(468, 10); + put(469, 1); + put(470, 2); + put(471, 6); + put(472, 3); + put(473, 1); + put(474, 13); + put(475, 1); + put(476, 12); + put(477, 5); + put(478, 1); + put(479, 6); + put(480, 11); + put(481, 13); + put(482, 11); + put(483, 12); + put(484, 13); + put(485, 5); + put(486, 3); + put(487, 9); + put(488, 4); + put(489, 13); + put(490, 6); + put(491, 2); + put(492, 3); + put(493, 11); + put(494, 1); + put(495, 4); + put(496, 3); + put(497, 11); + put(498, 3); + put(499, 6); + put(500, 2); + put(501, 12); + put(502, 4); + put(503, 6); + put(504, 6); + put(505, 1); + put(506, 6); + put(507, 11); + put(508, 11); + put(509, 2); + put(510, 1); + put(511, 3); + put(512, 6); + put(513, 3); + put(514, 8); + put(515, 8); + put(516, 3); + put(517, 13); + put(518, 11); + put(519, 1); + put(520, 9); + put(521, 11); + put(522, 3); + put(523, 7); + put(524, 9); + put(525, 6); + put(526, 13); + put(527, 3); + put(528, 9); + put(529, 11); + put(530, 6); + put(531, 6); + put(532, 5); + put(533, 5); + put(534, 6); + put(535, 3); + put(536, 3); + put(537, 6); + put(538, 2); + put(539, 1); + put(540, 11); + put(541, 4); + put(542, 1); + put(543, 3); + put(544, 9); + put(545, 9); + put(546, 11); + put(547, 1); + put(548, 9); + put(549, 1); + put(550, 11); + put(551, 9); + put(552, 11); + put(553, 13); + put(554, 6); + }}; +} diff --git a/src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/EntityPublicationCountRequestHandler.java b/src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/EntityPublicationCountRequestHandler.java index 2acf7fe5..84777e1c 100644 --- a/src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/EntityPublicationCountRequestHandler.java +++ b/src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/EntityPublicationCountRequestHandler.java @@ -138,7 +138,7 @@ public class EntityPublicationCountRequestHandler implements /* * This will provide the data in json format mainly used for standalone tmeporal vis. * */ - if (VisualizationFrameworkConstants.TEMPORAL_GRAPH_JSON_DATA_VIS_MODE + if (VisualizationFrameworkConstants.JSON_OUTPUT_FORMAT .equalsIgnoreCase(vitroRequest.getParameter( VisualizationFrameworkConstants.VIS_MODE_KEY))) { @@ -306,7 +306,7 @@ public class EntityPublicationCountRequestHandler implements entityJson.setEntityURI(subentity.getIndividualURI()); - boolean isPerson = UtilityFunctions.isEntityAPerson(vreq, subentity); + boolean isPerson = UtilityFunctions.isEntityAPerson(vreq, subentity.getIndividualURI()); if (isPerson) { entityJson.setVisMode("PERSON"); diff --git a/src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/cached/TemporalGrantVisualizationRequestHandler.java b/src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/cached/TemporalGrantVisualizationRequestHandler.java index cd0c2078..0588aafd 100644 --- a/src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/cached/TemporalGrantVisualizationRequestHandler.java +++ b/src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/cached/TemporalGrantVisualizationRequestHandler.java @@ -95,7 +95,7 @@ public class TemporalGrantVisualizationRequestHandler implements /* * This will provide the data in json format mainly used for standalone temporal vis. * */ - if (VisualizationFrameworkConstants.TEMPORAL_GRAPH_JSON_DATA_VIS_MODE + if (VisualizationFrameworkConstants.JSON_OUTPUT_FORMAT .equalsIgnoreCase(vitroRequest .getParameter(VisualizationFrameworkConstants.VIS_MODE_KEY))) { diff --git a/src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/cached/TemporalPublicationVisualizationRequestHandler.java b/src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/cached/TemporalPublicationVisualizationRequestHandler.java index 25cb695a..02015daf 100644 --- a/src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/cached/TemporalPublicationVisualizationRequestHandler.java +++ b/src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/cached/TemporalPublicationVisualizationRequestHandler.java @@ -207,7 +207,7 @@ public class TemporalPublicationVisualizationRequestHandler implements /* * This will provide the data in json format mainly used for standalone tmeporal vis. * */ - if (VisualizationFrameworkConstants.TEMPORAL_GRAPH_JSON_DATA_VIS_MODE + if (VisualizationFrameworkConstants.JSON_OUTPUT_FORMAT .equalsIgnoreCase(vitroRequest.getParameter( VisualizationFrameworkConstants.VIS_MODE_KEY))) { diff --git a/src/edu/cornell/mannlib/vitro/webapp/visualization/entitygrantcount/EntityGrantCountRequestHandler.java b/src/edu/cornell/mannlib/vitro/webapp/visualization/entitygrantcount/EntityGrantCountRequestHandler.java index 9006c401..d69d36aa 100644 --- a/src/edu/cornell/mannlib/vitro/webapp/visualization/entitygrantcount/EntityGrantCountRequestHandler.java +++ b/src/edu/cornell/mannlib/vitro/webapp/visualization/entitygrantcount/EntityGrantCountRequestHandler.java @@ -85,7 +85,7 @@ public class EntityGrantCountRequestHandler implements /* * This will provide the data in json format mainly used for standalone temporal vis. * */ - if (VisualizationFrameworkConstants.TEMPORAL_GRAPH_JSON_DATA_VIS_MODE + if (VisualizationFrameworkConstants.JSON_OUTPUT_FORMAT .equalsIgnoreCase(vitroRequest .getParameter(VisualizationFrameworkConstants.VIS_MODE_KEY))) { @@ -304,7 +304,7 @@ public class EntityGrantCountRequestHandler implements entityJson.setEntityURI(subentity.getIndividualURI()); - if (UtilityFunctions.isEntityAPerson(vreq, subentity)) { + if (UtilityFunctions.isEntityAPerson(vreq, subentity.getIndividualURI())) { entityJson.setVisMode("PERSON"); } else { entityJson.setVisMode("ORGANIZATION"); diff --git a/src/edu/cornell/mannlib/vitro/webapp/visualization/mapofscience/MapOfScienceVisualizationRequestHandler.java b/src/edu/cornell/mannlib/vitro/webapp/visualization/mapofscience/MapOfScienceVisualizationRequestHandler.java index fd4f3734..b3f94f8e 100644 --- a/src/edu/cornell/mannlib/vitro/webapp/visualization/mapofscience/MapOfScienceVisualizationRequestHandler.java +++ b/src/edu/cornell/mannlib/vitro/webapp/visualization/mapofscience/MapOfScienceVisualizationRequestHandler.java @@ -2,14 +2,21 @@ package edu.cornell.mannlib.vitro.webapp.visualization.mapofscience; +import java.io.IOException; +import java.text.DecimalFormat; import java.util.HashMap; import java.util.HashSet; import java.util.Map; import java.util.Set; +import mapping.ScienceMapping; +import mapping.ScienceMappingResult; + import org.apache.commons.lang.StringEscapeUtils; import org.apache.commons.lang.StringUtils; +import org.apache.commons.lang.math.NumberUtils; import org.apache.commons.logging.Log; +import org.jgrapht.util.MathUtil; import com.google.gson.Gson; import com.hp.hpl.jena.query.Dataset; @@ -19,6 +26,7 @@ import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.Res import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues; import edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController; import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants; +import edu.cornell.mannlib.vitro.webapp.visualization.constants.MapOfScienceConstants; import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants; import edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants; import edu.cornell.mannlib.vitro.webapp.visualization.entitycomparison.OrganizationUtilityFunctions; @@ -84,7 +92,7 @@ public class MapOfScienceVisualizationRequestHandler implements private Map getSubjectEntityAndGenerateDataResponse( VitroRequest vitroRequest, Log log, Dataset dataset, - String subjectEntityURI, VisConstants.DataVisMode visMode) + String subjectEntityURI, VisConstants.DataVisMode dataOuputFormat) throws MalformedQueryParametersException { Entity organizationEntity = SelectOnModelUtilities @@ -92,7 +100,7 @@ public class MapOfScienceVisualizationRequestHandler implements if (organizationEntity.getSubEntities() == null) { - if (VisConstants.DataVisMode.JSON.equals(visMode)) { + if (VisConstants.DataVisMode.JSON.equals(dataOuputFormat)) { return prepareStandaloneDataErrorResponse(); } else { return prepareDataErrorResponse(); @@ -119,7 +127,7 @@ public class MapOfScienceVisualizationRequestHandler implements if (allDocumentURIToVOs.isEmpty() && documentURIForAssociatedPeopleTOVO.isEmpty()) { - if (VisConstants.DataVisMode.JSON.equals(visMode)) { + if (VisConstants.DataVisMode.JSON.equals(dataOuputFormat)) { return prepareStandaloneDataErrorResponse(); } else { return prepareDataErrorResponse(); @@ -127,10 +135,10 @@ public class MapOfScienceVisualizationRequestHandler implements } else { - if (VisConstants.DataVisMode.JSON.equals(visMode)) { + if (VisConstants.DataVisMode.JSON.equals(dataOuputFormat)) { return prepareStandaloneDataResponse(vitroRequest, organizationEntity); } else { - return prepareDataResponse(organizationEntity); + return prepareDataResponse(vitroRequest, organizationEntity); } } } @@ -138,12 +146,13 @@ public class MapOfScienceVisualizationRequestHandler implements /** * Provides response when json file containing the publication count over the * years is requested. + * @param vitroRequest * * @param entity * @param subentities * @param subOrganizationTypesResult */ - private Map prepareDataResponse(Entity entity) { + private Map prepareDataResponse(VitroRequest vitroRequest, Entity entity) { String entityLabel = entity.getEntityLabel(); @@ -155,7 +164,7 @@ public class MapOfScienceVisualizationRequestHandler implements } String outputFileName = UtilityFunctions.slugify(entityLabel) - + "_publications-per-year" + ".csv"; + + "_discipline-to-publications" + ".csv"; Map fileData = new HashMap(); @@ -165,7 +174,7 @@ public class MapOfScienceVisualizationRequestHandler implements fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY, "application/octet-stream"); fileData.put(DataVisualizationController.FILE_CONTENT_KEY, - getEntityPublicationsPerYearCSVContent(entity)); + getDisciplineToPublicationsCSVContent(entity)); return fileData; } @@ -190,7 +199,7 @@ public class MapOfScienceVisualizationRequestHandler implements fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY, "application/octet-stream"); fileData.put(DataVisualizationController.FILE_CONTENT_KEY, - "{\"error\" : \"No Publications for this Organization found in VIVO.\"}"); + "{\"error\" : \"No Publications for this Entity found in VIVO.\"}"); return fileData; } @@ -202,56 +211,37 @@ public class MapOfScienceVisualizationRequestHandler implements String entityURI = vitroRequest .getParameter(VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY); - /* - * This will provide the data in json format mainly used for standalone tmeporal vis. - * */ - if (VisualizationFrameworkConstants.TEMPORAL_GRAPH_JSON_DATA_VIS_MODE - .equalsIgnoreCase(vitroRequest.getParameter( - VisualizationFrameworkConstants.VIS_MODE_KEY))) { - - if (StringUtils.isNotBlank(entityURI)) { - - return getSubjectEntityAndGenerateDataResponse( - vitroRequest, - log, - dataset, - entityURI, - VisConstants.DataVisMode.JSON); - } else { - - return getSubjectEntityAndGenerateDataResponse( - vitroRequest, - log, - dataset, - OrganizationUtilityFunctions - .getStaffProvidedOrComputedHighestLevelOrganization( - log, - dataset, - vitroRequest), - VisConstants.DataVisMode.JSON); - } - - } else { - /* - * This provides csv download files for the content in the tables. - * */ - - return getSubjectEntityAndGenerateDataResponse( - vitroRequest, - log, - dataset, - entityURI, - VisConstants.DataVisMode.CSV); - + if (StringUtils.isBlank(entityURI)) { + entityURI = OrganizationUtilityFunctions + .getStaffProvidedOrComputedHighestLevelOrganization( + log, + dataset, + vitroRequest); } + VisConstants.DataVisMode currentDataVisMode = VisConstants.DataVisMode.CSV; + + if (VisualizationFrameworkConstants.JSON_OUTPUT_FORMAT + .equalsIgnoreCase(vitroRequest.getParameter( + VisualizationFrameworkConstants.OUTPUT_FORMAT_KEY))) { + currentDataVisMode = VisConstants.DataVisMode.JSON; + } + + + return getSubjectEntityAndGenerateDataResponse( + vitroRequest, + log, + dataset, + entityURI, + currentDataVisMode); + } @Override public Object generateAjaxVisualization(VitroRequest vitroRequest, Log log, Dataset dataset) throws MalformedQueryParametersException { - throw new UnsupportedOperationException("Entity Pub Count does not provide Ajax Response."); + throw new UnsupportedOperationException("Map of Science Vis does not provide Ajax Response."); } private Map prepareStandaloneDataResponse( @@ -279,10 +269,11 @@ public class MapOfScienceVisualizationRequestHandler implements Map body = new HashMap(); body.put("title", organizationLabel + " - Map of Science Visualization"); - body.put("organizationURI", entityURI); - body.put("organizationLocalName", UtilityFunctions.getIndividualLocalName(entityURI, vreq)); + body.put("entityURI", entityURI); + body.put("entityLocalName", UtilityFunctions.getIndividualLocalName(entityURI, vreq)); + body.put("entityLabel", organizationLabel); body.put("vivoDefaultNamespace", vreq.getWebappDaoFactory().getDefaultNamespace()); - body.put("organizationLabel", organizationLabel); + return new TemplateResponseValues(standaloneTemplate, body); } @@ -299,78 +290,197 @@ public class MapOfScienceVisualizationRequestHandler implements Gson json = new Gson(); Set jsonContent = new HashSet(); + MapOfScience entityJson = new MapOfScience(subjectEntity.getIndividualURI()); + entityJson.setLabel(subjectEntity.getIndividualLabel()); + + if (UtilityFunctions.isEntityAPerson(vreq, subjectEntity.getEntityURI())) { + entityJson.setType("PERSON"); + } else { + entityJson.setType("ORGANIZATION"); + } + + Set publicationsForEntity = new HashSet(); + for (SubEntity subentity : subjectEntity.getSubEntities()) { - MapOfScience entityJson = new MapOfScience(subentity.getIndividualURI()); + Set subEntityActivities = subentity.getActivities(); + publicationsForEntity.addAll(subEntityActivities); - entityJson.setLabel(subentity.getIndividualLabel()); - entityJson.setLastCachedAtDateTime(subentity.getLastCachedAtDateTime()); + String subEntityType = "ORGANIZATION"; if (subentity.getEntityClass().equals(VOConstants.EntityClassType.PERSON)) { - entityJson.setType("PERSON"); - } else if (subentity.getEntityClass().equals(VOConstants.EntityClassType.ORGANIZATION)) { - entityJson.setType("ORGANIZATION"); - } - - - Map journalToPublicationCount = new HashMap(); - - int mappedPublicationCount = 0; - int unMappedPublicationCount = 0; - - for (Activity activity : subentity.getActivities()) { - - if (StringUtils.isNotBlank(((MapOfScienceActivity) activity).getPublishedInJournal())) { - - String journalName = ((MapOfScienceActivity) activity).getPublishedInJournal(); - if (journalToPublicationCount.containsKey(journalName)) { - - journalToPublicationCount.put(journalName, - journalToPublicationCount.get(journalName) + 1); - } else { - - journalToPublicationCount.put(journalName, 1); - } - - mappedPublicationCount++; - - } else { - - unMappedPublicationCount++; - } - + subEntityType = "PERSON"; } - entityJson.setPubsMapped(mappedPublicationCount); - entityJson.setPubsUnmapped(unMappedPublicationCount); - entityJson.setSubdisciplineActivity(journalToPublicationCount); + entityJson.addSubEntity(subentity.getIndividualURI(), + subentity.getIndividualLabel(), + subEntityType, + subEntityActivities.size()); - jsonContent.add(entityJson); } + PublicationJournalStats publicationStats = getPublicationJournalStats(publicationsForEntity); + + entityJson.setPubsWithNoJournals(publicationStats.noJournalCount); + + /* + * This method side-effects entityJson by updating its counts for mapped publications, + * publications with no journal names & publications with invalid journal names & + * map of subdiscipline to activity. + * */ + updateEntityMapOfScienceInformation(entityJson, + publicationStats.journalToPublicationCount); + + jsonContent.add(entityJson); + return json.toJson(jsonContent); } - private String getEntityPublicationsPerYearCSVContent(Entity entity) { + private PublicationJournalStats getPublicationJournalStats( + Set subEntityActivities) { + + Map journalToPublicationCount = new HashMap(); + int publicationsWithNoJournalCount = 0; + + for (Activity activity : subEntityActivities) { + + if (StringUtils.isNotBlank(((MapOfScienceActivity) activity).getPublishedInJournal())) { + + String journalName = ((MapOfScienceActivity) activity).getPublishedInJournal(); + if (journalToPublicationCount.containsKey(journalName)) { + + journalToPublicationCount.put(journalName, + journalToPublicationCount.get(journalName) + 1); + } else { + + journalToPublicationCount.put(journalName, 1); + } + + } else { + + publicationsWithNoJournalCount++; + } + + } + + return new PublicationJournalStats(publicationsWithNoJournalCount, journalToPublicationCount); + } + + private void updateEntityMapOfScienceInformation(MapOfScience entityJson, + Map journalToPublicationCount) { +// System.out.println("journalToPublicationCount " + journalToPublicationCount); + + int mappedPublicationCount = 0; + int publicationsWithInvalidJournalCount = 0; + Map subdisciplineToActivity = new HashMap(); + + ScienceMappingResult result = getScienceMappingResult(journalToPublicationCount); + + if (result != null) { + subdisciplineToActivity = result.getMappedResult(); + publicationsWithInvalidJournalCount = Math.round(result.getUnMappedPublications()); + mappedPublicationCount = Math.round(result.getMappedPublications()); + } + +// System.out.println("subdisciplineToActivity " + subdisciplineToActivity); + + entityJson.setPubsMapped(mappedPublicationCount); + entityJson.setPubsWithInvalidJournals(publicationsWithInvalidJournalCount); + + entityJson.setSubdisciplineActivity(subdisciplineToActivity); + } + + private ScienceMappingResult getScienceMappingResult( + Map journalToPublicationCount) { + ScienceMappingResult result = null; + try { + result = (new ScienceMapping()).generateScienceMappingResult(journalToPublicationCount); + } catch (NumberFormatException e) { + System.err.println("NumberFormatException coming from Map Of Science Vis"); + e.printStackTrace(); + } catch (IOException e) { + System.err.println("IOException coming from Map Of Science Vis"); + e.printStackTrace(); + } + return result; + } + + private String getDisciplineToPublicationsCSVContent(Entity subjectEntity) { StringBuilder csvFileContent = new StringBuilder(); - csvFileContent.append("Entity Name, Publication Count, Entity Type\n"); + csvFileContent.append("Discipline, Publication Count, % Activity\n"); - for (SubEntity subEntity : entity.getSubEntities()) { + Set publicationsForEntity = new HashSet(); + + for (SubEntity subEntity : subjectEntity.getSubEntities()) { - csvFileContent.append(StringEscapeUtils.escapeCsv(subEntity.getIndividualLabel())); + publicationsForEntity.addAll(subEntity.getActivities()); + } + + + PublicationJournalStats publicationStats = getPublicationJournalStats(publicationsForEntity); + + ScienceMappingResult result = getScienceMappingResult(publicationStats.journalToPublicationCount); + + Map disciplineToPublicationCount = new HashMap(); + + Float totalMappedPublications = new Float(0); + + if (result != null) { + + for (Map.Entry currentMappedSubdiscipline : result.getMappedResult().entrySet()) { + + float updatedPublicationCount = currentMappedSubdiscipline.getValue(); + + Integer lookedUpDisciplineID = MapOfScienceConstants.SUB_DISCIPLINE_ID_TO_DISCIPLINE_ID + .get(currentMappedSubdiscipline.getKey()); + + if (disciplineToPublicationCount.containsKey(lookedUpDisciplineID)) { + + updatedPublicationCount += disciplineToPublicationCount.get(lookedUpDisciplineID); + } + + disciplineToPublicationCount.put(lookedUpDisciplineID, updatedPublicationCount); + } + + totalMappedPublications = result.getMappedPublications(); + } + + DecimalFormat percentageActivityFormat = new DecimalFormat("#.#"); + + for (Map.Entry currentMappedDiscipline : disciplineToPublicationCount.entrySet()) { + + csvFileContent.append(StringEscapeUtils.escapeCsv(MapOfScienceConstants.DISCIPLINE_ID_TO_LABEL.get(currentMappedDiscipline.getKey()))); csvFileContent.append(", "); - csvFileContent.append(subEntity.getActivities().size()); + csvFileContent.append(percentageActivityFormat.format(currentMappedDiscipline.getValue())); csvFileContent.append(", "); - String allTypes = StringUtils.join(subEntity.getEntityTypeLabels(), "; "); + if (totalMappedPublications > 0) { + csvFileContent.append(percentageActivityFormat.format(100 * currentMappedDiscipline.getValue() / totalMappedPublications)); + } else { + csvFileContent.append("Not Available"); + } - csvFileContent.append(StringEscapeUtils.escapeCsv(allTypes)); csvFileContent.append("\n"); } + return csvFileContent.toString(); } + + private class PublicationJournalStats { + + int noJournalCount; + Map journalToPublicationCount; + + public PublicationJournalStats(int noJournalCount, + Map journalToPublicationCount) { + + this.noJournalCount = noJournalCount; + this.journalToPublicationCount = journalToPublicationCount; + } + + } } \ No newline at end of file diff --git a/src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/json/MapOfScience.java b/src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/json/MapOfScience.java index b181f414..77d10ac1 100644 --- a/src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/json/MapOfScience.java +++ b/src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/json/MapOfScience.java @@ -2,7 +2,9 @@ package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json; import java.util.HashMap; +import java.util.HashSet; import java.util.Map; +import java.util.Set; public class MapOfScience { @@ -10,9 +12,11 @@ public class MapOfScience { private String label; private String type; private int pubsMapped; - private int pubsUnmapped; + private int pubsWithNoJournals; + private int pubsWithInvalidJournals; private String lastCachedAtDateTime; - private Map subdisciplineActivity = new HashMap(); + private Map subdisciplineActivity = new HashMap(); + private Set subEntities = new HashSet(); public MapOfScience(String uri) { this.uri = uri; @@ -43,16 +47,24 @@ public class MapOfScience { public int getPubsMapped() { return pubsMapped; } - public void setPubsUnmapped(int pubsUnmapped) { - this.pubsUnmapped = pubsUnmapped; + public void setPubsWithNoJournals(int pubsUnmapped) { + this.pubsWithNoJournals = pubsUnmapped; } - public int getPubsUnmapped() { - return pubsUnmapped; + public int getPubsWithNoJournals() { + return pubsWithNoJournals; } - public void setSubdisciplineActivity(Map subdisciplineActivity) { + public void setPubsWithInvalidJournals(int pubsWithInvalidJournals) { + this.pubsWithInvalidJournals = pubsWithInvalidJournals; + } + + public int getPubsWithInvalidJournals() { + return pubsWithInvalidJournals; + } + + public void setSubdisciplineActivity(Map subdisciplineActivity) { this.subdisciplineActivity = subdisciplineActivity; } - public Map getSubdisciplineActivity() { + public Map getSubdisciplineActivity() { return subdisciplineActivity; } @@ -64,4 +76,60 @@ public class MapOfScience { return lastCachedAtDateTime; } + public void addSubEntity(String uri, String label, String type, int pubs) { + this.subEntities.add(new SubEntityInfo(uri, label, type, pubs)); + } + + public Set getSubEntities() { + return subEntities; + } + + private class SubEntityInfo { + + private String uri; + private String label; + private String type; + private int pubs; + + public SubEntityInfo(String uri, String label, String type, int pubs) { + this.uri = uri; + this.label = label; + this.type = type; + this.pubs = pubs; + } + + public String getUri() { + return uri; + } + + public void setUri(String uri) { + this.uri = uri; + } + + public String getLabel() { + return label; + } + + public void setLabel(String label) { + this.label = label; + } + + public String getType() { + return type; + } + + public void setType(String type) { + this.type = type; + } + + public int getPubs() { + return pubs; + } + + public void setPubs(int pubs) { + this.pubs = pubs; + } + + + } } diff --git a/src/edu/cornell/mannlib/vitro/webapp/visualization/visutils/UtilityFunctions.java b/src/edu/cornell/mannlib/vitro/webapp/visualization/visutils/UtilityFunctions.java index 4a555817..8c18397d 100644 --- a/src/edu/cornell/mannlib/vitro/webapp/visualization/visutils/UtilityFunctions.java +++ b/src/edu/cornell/mannlib/vitro/webapp/visualization/visutils/UtilityFunctions.java @@ -251,10 +251,10 @@ public class UtilityFunctions { return collaboratorshipNetworkURL != null ? collaboratorshipNetworkURL : "" ; } - public static boolean isEntityAPerson(VitroRequest vreq, SubEntity subentity) { + public static boolean isEntityAPerson(VitroRequest vreq, String individualURI) { return vreq.getWebappDaoFactory() .getIndividualDao() - .getIndividualByURI(subentity.getIndividualURI()) + .getIndividualByURI(individualURI) .isVClass("http://xmlns.com/foaf/0.1/Person"); }