Polish the obsolete_URI script, so it can be used to scan an active workspace, not just a released directory.

utilities/ISF-transition/obsoleteUris/vivo_known_exceptions_2.txt

@@ -0,0 +1,46 @@
+.*
+bin
+
+*.GIF
+*.as
+*.class
+*.fla
+*.gif
+*.gz
+*.ico
+*.jar
+*.jpg
+*.psd
+*.png
+*.swf
+*.war
+*.zip
+
+**/.*
+
+#
+# first_pass: no excluded files. everything was duplicated in the .bin directory, and
+#          probably in the .build directory also. Ran against the repository, so VIVO
+#          only.
+#
+#    7498   89730 2277668 first_pass.output
+#
+
+test/edu/cornell/mannlib/vitro/webapp/search/solr/NIHVIVO3853_DataSet1.rdf
+productMods/WEB-INF/ontologies/update/oldVersion/vivo-event-1.5.owl
+productMods/WEB-INF/ontologies/update/oldAnnotations/vivo-core-1.5-annotations.rdf
+productMods/WEB-INF/ontologies/update/diff.tab.txt
+
+#
+# second_pass: excluded these nasty files. Ran against a clean distro, with VIVO and
+#          Vitro, but no .bin or .build
+#
+#    1798    5159  170092 second_pass.output
+#
+
+productMods/WEB-INF/ontologies/update/oldVersion/vivo-foaf-1.5.owl
+productMods/WEB-INF/ontologies/update/oldVersion/vivo-core-1.5.owl
+productMods/WEB-INF/ontologies/update/oldVersion/vivo-bibo-1.5.owl
+productMods/WEB-INF/ontologies/update/oldVersion/scires-1.5.owl 
+productMods/WEB-INF/ontologies/update/oldVersion/vivo-dcterms-1.5.owl
+productMods/WEB-INF/ontologies/update/oldVersion/vivo-dcelements-1.5.owl