1. Cleanup of old files.
2. Fix for the NIHVIVO-2818 issue.
This commit is contained in:
tankchintan
parent
0959ead1cc
commit
a83c1180f4
3 changed files with 1 additions and 756 deletions
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@ -1,276 +0,0 @@
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/* $This file is distributed under the terms of the license in /doc/license.txt$ */
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function getWellFormedURLs(given_uri, type) {
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// general best practice is to put javascript code inside document.ready
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// but in this case when i do that the function does not get called
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// properly.
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// so removing it for now.
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// $(document).ready(function() {
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if (type == "coauthorship") {
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var finalURL = $.ajax({
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url: contextPath + "/visualization",
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data: ({vis: "utilities", vis_mode: "COAUTHORSHIP_URL", uri: given_uri}),
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dataType: "text",
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async: false,
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success:function(data){
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// console.log("COA - " + data);
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}
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}).responseText;
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return finalURL;
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} else if (type == "profile") {
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var finalURL = $.ajax({
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url: contextPath + "/visualization",
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data: ({vis: "utilities", vis_mode: "PROFILE_URL", uri: given_uri}),
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dataType: "text",
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async: false,
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success:function(data){
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}
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}).responseText;
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return finalURL;
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} else if (type == "image") {
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var finalURL = $.ajax({
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url: contextPath + "/visualization",
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data: ({vis: "utilities", vis_mode: "IMAGE_URL", uri: given_uri}),
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dataType: "text",
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async: false,
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success:function(data){
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}
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}).responseText;
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return finalURL;
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} else if (type == "profile_info") {
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var profileInfoJSON = $.ajax({
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url: contextPath + "/visualization",
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data: ({vis: "utilities", vis_mode: "PROFILE_INFO", uri: given_uri}),
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dataType: "json",
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async: false,
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success:function(data){
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}
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}).responseText;
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return profileInfoJSON;
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}
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// });
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}
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$.fn.image = function(src, successFunc, failureFunc){
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return this.each(function(){
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var profileImage = new Image();
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profileImage.src = src;
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profileImage.width = 150;
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profileImage.onerror = failureFunc;
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profileImage.onload = successFunc;
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return profileImage;
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});
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}
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function setProfileImage(imageContainerID, rawPath, contextPath) {
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if (imageContainerID == "") {
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return;
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}
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var imageLink = contextPath + rawPath;
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var imageContainer = $("#" + imageContainerID);
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imageContainer.image(imageLink,
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function(){
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imageContainer.empty().append(this);
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},
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function(){
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//For performing any action on failure to
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//find the image.
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imageContainer.empty();
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}
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);
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}
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function setProfileMoniker(monikerContainerID, moniker) {
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if (monikerContainerID == "") {
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return;
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}
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$("#" + monikerContainerID).empty().text(moniker);
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}
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function setProfileName(nameContainerID, name) {
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if (nameContainerID == "") {
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return;
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}
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$("#" + nameContainerID).empty().text(name);
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}
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function processProfileInformation(nameContainerID,
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monikerContainerID,
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imageContainerID,
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profileInfoJSON) {
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var name, imageRawPath, imageContextPath, moniker;
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$.each(profileInfoJSON, function(key, set){
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if (key.search(/imageThumb/i) > -1) {
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imageRawPath = set[0];
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} else if (key.search(/imageContextPath/i) > -1) {
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imageContextPath = set[0];
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} else if (key.search(/moniker/i) > -1) {
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moniker = set[0];
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} else if (key.search(/label/i) > -1) {
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name = set[0];
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}
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});
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setProfileName(nameContainerID, name);
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setProfileMoniker(monikerContainerID, moniker);
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setProfileImage(imageContainerID, imageRawPath, imageContextPath);
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}
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function nodeClickedJS(json){
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var obj = jQuery.parseJSON(json);
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$("#newsLetter").attr("style","visibility:visible");
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$("#authorName").empty().append(obj.name);
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$("#works").empty().append(obj.number_of_authored_works);
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/*
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* Here obj.url points to the uri of that individual
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*/
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if(obj.url){
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$("#profileUrl").attr("href", getWellFormedURLs(obj.url, "profile"));
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$("#coAuthorshipVisUrl").attr("href", getWellFormedURLs(obj.url, "coauthorship"));
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processProfileInformation("",
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"profileMoniker",
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"profileImage",
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jQuery.parseJSON(getWellFormedURLs(obj.url, "profile_info")));
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} else{
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$("#profileUrl").attr("href","#");
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$("#coAuthorshipVisUrl").attr("href","#");
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}
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$("#coAuthorName").empty().append(obj.name);
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$("#coAuthors").empty().append(obj.num_coauthors);
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$("#firstPublication").empty().append((obj.earliest_publication)?obj.earliest_publication+" First Publication":"");
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$("#lastPublication").empty().append((obj.latest_publication)?obj.latest_publication+" Last Publication":"");
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// obj.url:the url parameter for node
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}
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function renderSparklineVisualization(visualizationURL) {
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$(document).ready(function() {
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//$("#ego_sparkline").empty().html('<img src="${loadingImageLink}" />');
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$.ajax({
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url: visualizationURL,
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dataType: "html",
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success:function(data){
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$("#ego_sparkline").html(data);
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}
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});
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});
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}
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function renderCoAuthorshipVisualization() {
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//Version check for the Flash Player that has the ability to start Player
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//Product Install (6.0r65)
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var hasProductInstall = DetectFlashVer(6, 0, 65);
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//Version check based upon the values defined in globals
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var hasRequestedVersion = DetectFlashVer(requiredMajorVersion, requiredMinorVersion, requiredRevision);
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if ( hasProductInstall && !hasRequestedVersion ) {
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// DO NOT MODIFY THE FOLLOWING FOUR LINES
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// Location visited after installation is complete if installation is
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// required
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var MMPlayerType = (isIE == true) ? "ActiveX" : "PlugIn";
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var MMredirectURL = window.location;
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document.title = document.title.slice(0, 47) + " - Flash Player Installation";
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var MMdoctitle = document.title;
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AC_FL_RunContent(
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"src", "playerProductInstall",
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"FlashVars", "MMredirectURL="+MMredirectURL+'&MMplayerType='+MMPlayerType+'&MMdoctitle='+MMdoctitle+"",
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"width", "600",
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"height", "800",
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"align", "middle",
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"id", "CoAuthor",
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"quality", "high",
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"bgcolor", "#ffffff",
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"name", "CoAuthor",
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"allowScriptAccess","sameDomain",
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"type", "application/x-shockwave-flash",
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"pluginspage", "http://www.adobe.com/go/getflashplayer"
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);
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} else if (hasRequestedVersion) {
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// if we've detected an acceptable version
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// embed the Flash Content SWF when all tests are passed
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AC_FL_RunContent(
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"src", swfLink,
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"flashVars", "graphmlUrl=" + egoCoAuthorshipDataURL,
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"width", "600",
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"height", "800",
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"align", "middle",
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"id", "CoAuthor",
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"quality", "high",
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"bgcolor", "#ffffff",
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"name", "CoAuthor",
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"allowScriptAccess","sameDomain",
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"type", "application/x-shockwave-flash",
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"pluginspage", "http://www.adobe.com/go/getflashplayer"
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);
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} else { // flash is too old or we can't detect the plugin
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var alternateContent = 'Alternate HTML content should be placed here. '
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+ 'This content requires the Adobe Flash Player. '
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+ '<a href=http://www.adobe.com/go/getflash/>Get Flash</a>';
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document.write(alternateContent); // insert non-flash content
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}
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}
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@ -1,479 +0,0 @@
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/* $This file is distributed under the terms of the license in /doc/license.txt$ */
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function getWellFormedURLs(given_uri, type) {
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if (!given_uri || given_uri == "") {
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return;
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}
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// general best practice is to put javascript code inside document.ready
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// but in this case when i do that the function does not get called
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// properly.
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// so removing it for now.
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// $(document).ready(function() {
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var finalURL;
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if (type == "coauthorship") {
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finalURL = $.ajax({
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url: contextPath + "/visualization",
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data: ({vis: "utilities", vis_mode: "PERSON_LEVEL_URL", uri: given_uri}),
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dataType: "text",
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async: false,
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success:function(data){
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}
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}).responseText;
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return finalURL;
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} else if (type == "copi") {
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finalURL = $.ajax({
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url: contextPath + "/visualization",
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data: ({vis: "utilities", vis_mode: "COPI_URL", uri: given_uri}),
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dataType: "text",
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async: false,
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success:function(data){
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}
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}).responseText;
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return finalURL;
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}else if (type == "profile") {
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finalURL = $.ajax({
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url: contextPath + "/visualization",
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data: ({vis: "utilities", vis_mode: "PROFILE_URL", uri: given_uri}),
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dataType: "text",
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async: false,
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success:function(data){
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}
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}).responseText;
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return finalURL;
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} else if (type == "image") {
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finalURL = $.ajax({
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url: contextPath + "/visualization",
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data: ({vis: "utilities", vis_mode: "IMAGE_URL", uri: given_uri}),
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dataType: "text",
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async: false,
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success:function(data){
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}
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}).responseText;
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return finalURL;
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} else if (type == "profile_info") {
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var profileInfoJSON = $.ajax({
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url: contextPath + "/visualization",
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data: ({vis: "utilities", vis_mode: "PROFILE_INFO", uri: given_uri}),
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dataType: "json",
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async: false,
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success:function(data){
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}
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}).responseText;
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return profileInfoJSON;
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}
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// });
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}
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$.fn.image = function(src, successFunc, failureFunc){
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return this.each(function(){
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var profileImage = new Image();
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profileImage.onerror = failureFunc;
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profileImage.onload = successFunc;
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profileImage.src = src;
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return profileImage;
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});
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};
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function setProfileImage(imageContainerID, mainImageURL, contextPath) {
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if (imageContainerID == "") {
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return;
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}
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if (!mainImageURL || mainImageURL == "") {
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$("#" + imageContainerID).empty();
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return;
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}
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var rawPath = getWellFormedURLs(mainImageURL, "image");
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var imageLink = contextPath + rawPath;
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var imageContainer = $("#" + imageContainerID);
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imageContainer.image(imageLink,
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function(){
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imageContainer.empty().append(this);
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},
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function(){
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// For performing any action on failure to
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// find the image.
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imageContainer.empty();
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}
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);
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}
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function setProfileMoniker(monikerContainerID, moniker, doEllipsis) {
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if (monikerContainerID == "") {
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return;
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}
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if (!moniker) {
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$("#" + monikerContainerID).empty();
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return;
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}
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var finalDisplayMoniker;
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if (moniker.length > 30 && doEllipsis) {
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finalDisplayMoniker = moniker.substr(0,30) + "...";
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} else {
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finalDisplayMoniker = moniker;
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}
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$("#" + monikerContainerID).empty().text(finalDisplayMoniker);
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$("#" + monikerContainerID).attr('title', moniker);
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}
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function setProfileName(nameContainerID, name, doNameEllipsis) {
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if (nameContainerID == "") {
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return;
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}
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if (!name) {
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$("#" + nameContainerID).empty();
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return;
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}
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var finalDisplayName;
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if (name.length > 30 && doNameEllipsis) {
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finalDisplayName = name.substr(0,30) + "...";
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} else {
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finalDisplayName = name;
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}
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$("#" + nameContainerID).empty().text(finalDisplayName);
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$("#" + nameContainerID).attr('title', name);
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}
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function processProfileInformation(nameContainerID,
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monikerContainerID,
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imageContainerID,
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profileInfoJSON,
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doMonikerEllipsis,
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doNameEllipsis) {
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var name, mainImageURL, imageContextPath, moniker;
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if (jQuery.isEmptyObject(profileInfoJSON)) {
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return;
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}
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$.each(profileInfoJSON, function(key, set){
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if (key.search(/mainImage/i) > -1) {
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mainImageURL = set[0];
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} else if (key.search(/imageContextPath/i) > -1) {
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imageContextPath = set[0];
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} else if (key.search(/moniker/i) > -1) {
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moniker = set[0];
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} else if (key.search(/label/i) > -1) {
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name = set[0];
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}
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});
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setProfileName(nameContainerID, name, doNameEllipsis);
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setProfileMoniker(monikerContainerID, moniker, doMonikerEllipsis);
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setProfileImage(imageContainerID, mainImageURL, imageContextPath);
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}
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function visLoaded(nodes){
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var jsonedNodes = jQuery.parseJSON(nodes);
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var tableID = "";
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var tableContainer = "";
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if(visMode == "coauthorship"){
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tableID = "coauthorships_table";
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tableContainer = "coauth_table_container";
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} else{
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tableID = "copis_table";
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tableContainer = "copi_table_container";
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}
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$(document).ready(function() {
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createTable("coauthorships_table" , "coauth_table_container" , jsonedNodes.slice(1));
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});
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}
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function createTable(tableID, tableContainer, tableData) {
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var number_of_works = "";
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var tableCaption = "";
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var tableColumnTitle1 = "";
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var tableColumnTitle2 = "";
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if(visMode == "coauthorship"){
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tableCaption = "Co-authors ";
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tableColumnTitle1 = "Author";
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tableColumnTitle2 = "Publications with <br />";
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}else{
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tableCaption = "Co-pis ";
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tableColumnTitle1 = "Principal Investigator";
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tableColumnTitle2 = "Grants with <br />";
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}
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var table = $('<table>');
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table.attr('id', tableID);
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table.append($('<caption>').html(tableCaption + "<a href=\"" + egoCoAuthorsListDataFileURL + "\">(.CSV File)</a>"));
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var header = $('<thead>');
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var row = $('<tr>');
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var authorTH = $('<th>');
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authorTH.html(tableColumnTitle1);
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row.append(authorTH);
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row.append($('<th>').html(tableColumnTitle2 + "" + $('#ego_label').text()));
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header.append(row);
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table.append(header);
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$.each(tableData, function(i, item){
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if(visMode == "coauthorship"){
|
||||
number_of_works = item.number_of_authored_works;
|
||||
}else{
|
||||
number_of_works = item.number_of_investigated_grants;
|
||||
}
|
||||
var row = $('<tr>');
|
||||
|
||||
row.append($('<td>').html(item.label));
|
||||
row.append($('<td>').html(number_of_works));
|
||||
|
||||
table.append(row);
|
||||
|
||||
});
|
||||
|
||||
table.prependTo('#' + tableContainer);
|
||||
$('#' + tableContainer + " #loadingData").remove();
|
||||
}
|
||||
|
||||
//renderStatsOnNodeClicked, CoRelations, noOfCoRelations
|
||||
//function nodeClickedJS(json){
|
||||
function renderStatsOnNodeClicked(json){
|
||||
|
||||
//console.log(json);
|
||||
var obj = jQuery.parseJSON(json);
|
||||
|
||||
var works = "";
|
||||
var persons = "";
|
||||
var relation = "";
|
||||
var earliest_work = "";
|
||||
var latest_work = "";
|
||||
var number_of_works = "";
|
||||
|
||||
if(visMode == "coauthorship"){
|
||||
works = "Publication(s)";
|
||||
persons = "Co-author(s)";
|
||||
relation = "coauthorship"
|
||||
earliest_work = obj.earliest_publication;
|
||||
latest_work = obj.latest_publication;
|
||||
number_of_works = obj.number_of_authored_works;
|
||||
}else{
|
||||
works = "Grant(s)";
|
||||
persons = "Co-PI(s)";
|
||||
relation = "copi";
|
||||
earliest_work = obj.earliest_grant;
|
||||
latest_work = obj.latest_grant;
|
||||
number_of_works = obj.number_of_investigated_grants;
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
$("#dataPanel").attr("style","visibility:visible");
|
||||
$("#works").empty().append(number_of_works);
|
||||
|
||||
/*
|
||||
* Here obj.url points to the uri of that individual
|
||||
*/
|
||||
if(obj.url){
|
||||
|
||||
if (obj.url == egoURI) {
|
||||
|
||||
$("#authorName").addClass('author_name').removeClass('neutral_author_name');
|
||||
$('#num_works > .author_stats_text').text(works);
|
||||
$('#num_authors > .author_stats_text').text(persons);
|
||||
|
||||
} else {
|
||||
|
||||
$("#authorName").addClass('neutral_author_name').removeClass('author_name');
|
||||
$('#num_works > .author_stats_text').text('Joint ' + works);
|
||||
$('#num_authors > .author_stats_text').text('Joint ' + persons);
|
||||
|
||||
}
|
||||
|
||||
$("#profileUrl").attr("href", getWellFormedURLs(obj.url, "profile"));
|
||||
$("#coAuthorshipVisUrl").attr("href", getWellFormedURLs(obj.url, relation));
|
||||
processProfileInformation("authorName",
|
||||
"profileMoniker",
|
||||
"profileImage",
|
||||
jQuery.parseJSON(getWellFormedURLs(obj.url, "profile_info")),
|
||||
true,
|
||||
true);
|
||||
|
||||
|
||||
|
||||
} else{
|
||||
$("#profileUrl").attr("href","#");
|
||||
$("#coAuthorshipVisUrl").attr("href","#");
|
||||
}
|
||||
|
||||
$("#coAuthors").empty().append(obj.noOfCorelations);
|
||||
|
||||
$("#firstPublication").empty().append(earliest_work);
|
||||
(earliest_work)?$("#fPub").attr("style","visibility:visible"):$("#fPub").attr("style","visibility:hidden");
|
||||
$("#lastPublication").empty().append(latest_work);
|
||||
(latest_work)?$("#lPub").attr("style","visibility:visible"):$("#lPub").attr("style","visibility:hidden");
|
||||
|
||||
// obj.url:the url parameter for node
|
||||
|
||||
}
|
||||
|
||||
/*
|
||||
* Inside both of these functions, '&' are replaced with '%26' because we are externally
|
||||
* passing two parameters to the flash code using flashvars (see renderCoAuthorshipVisualization())
|
||||
* and they are delimited using '&' too.
|
||||
*/
|
||||
|
||||
function getEncodedCoAuthorURL(){
|
||||
|
||||
var queryString = "uri="+ egoURI + "&vis=coauthorship&render_mode=data";
|
||||
// console.log('domainParam is '+ domainParam);
|
||||
// console.log('CoAuthorURL is ' + domainParam + '?' + queryString.replace(/&/g, '%26'));
|
||||
return domainParam + '?' + queryString.replace(/&/g, '%26');
|
||||
}
|
||||
|
||||
function getEncodedCoPIURL(){
|
||||
|
||||
var queryString = "uri="+ egoURI+ "&vis=coprincipalinvestigator&render_mode=data";
|
||||
// console.log('CoPIURL is ' + domainParam + '?' + queryString.replace(/&/g, '%26') );
|
||||
return domainParam + '?' + queryString.replace(/&/g, '%26');
|
||||
}
|
||||
|
||||
function renderCoAuthorshipVisualization() {
|
||||
|
||||
var visualization = "";
|
||||
var encodedURL = "";
|
||||
|
||||
if(visMode == "coauthorship"){
|
||||
visualization = "CoAuthor";
|
||||
encodedURL = getEncodedCoAuthorURL();
|
||||
} else {
|
||||
visualization = "CoPI";
|
||||
encodedURL = getEncodedCoPIURL();
|
||||
}
|
||||
|
||||
// console.log('visualization is ' + visualization + ' and encodedURL is '+ encodedURL);
|
||||
// Version check for the Flash Player that has the ability to start Player
|
||||
// Product Install (6.0r65)
|
||||
var hasProductInstall = DetectFlashVer(6, 0, 65);
|
||||
|
||||
// Version check based upon the values defined in globals
|
||||
var hasRequestedVersion = DetectFlashVer(requiredMajorVersion, requiredMinorVersion, requiredRevision);
|
||||
|
||||
if ( hasProductInstall && !hasRequestedVersion ) {
|
||||
// DO NOT MODIFY THE FOLLOWING FOUR LINES
|
||||
// Location visited after installation is complete if installation is
|
||||
// required
|
||||
var MMPlayerType = (isIE == true) ? "ActiveX" : "PlugIn";
|
||||
var MMredirectURL = window.location;
|
||||
document.title = document.title.slice(0, 47) + " - Flash Player Installation";
|
||||
var MMdoctitle = document.title;
|
||||
|
||||
AC_FL_RunContent(
|
||||
"src", "playerProductInstall",
|
||||
"FlashVars", "MMredirectURL="+MMredirectURL+'&MMplayerType='+MMPlayerType+'&MMdoctitle='+MMdoctitle+"",
|
||||
"width", "800",
|
||||
"height", "840",
|
||||
"align", "middle",
|
||||
"id", "EgoCentric",
|
||||
"quality", "high",
|
||||
"bgcolor", "#ffffff",
|
||||
"name", "EgoCentric",
|
||||
"allowScriptAccess","sameDomain",
|
||||
"type", "application/x-shockwave-flash",
|
||||
"pluginspage", "http://www.adobe.com/go/getflashplayer"
|
||||
);
|
||||
} else if (hasRequestedVersion) {
|
||||
// if we've detected an acceptable version
|
||||
// embed the Flash Content SWF when all tests are passed
|
||||
//coAuthorUrl=/vivo1/visualization?vis=coauthorship%26render_mode=data%26uri=http%3A%2F%2Fvivo.iu.edu%2Findividual%2FBrnerKaty&labelField=label&coPIUrl=/vivo1/visualization?vis=coprincipalinvestigator%26render_mode=data%26uri=http%3A%2F%2Fvivo.iu.edu%2Findividual%2FBrnerKaty&labelField=label
|
||||
AC_FL_RunContent(
|
||||
"src", swfLink,
|
||||
// "flashVars", 'coAuthorUrl='+ encodeURL(egoCoAuthorshipDataFeederURL) + '&coPIUrl=' + encodeURL(egoCoPIDataFeederURL) ,
|
||||
// "flashVars", 'coAuthorUrl='+ getEncodedCoAuthorURL() + '&coPIUrl=' + getEncodedCoPIURL() ,
|
||||
// "flashVars", 'graphmlUrl=' + getEncodedCoAuthorURL() + '&labelField=label&visType=CoAuthor',
|
||||
"flashVars", 'graphmlUrl=' + encodedURL + '&labelField=label&visType='+visualization,
|
||||
"width", "600",
|
||||
"height", "850",
|
||||
"align", "top",
|
||||
"id", "EgoCentric",
|
||||
"quality", "high",
|
||||
"bgcolor", "#ffffff",
|
||||
"name", "EgoCentric",
|
||||
"allowScriptAccess","sameDomain",
|
||||
"type", "application/x-shockwave-flash",
|
||||
"pluginspage", "http://www.adobe.com/go/getflashplayer"
|
||||
);
|
||||
} else { // flash is too old or we can't detect the plugin
|
||||
var alternateContent = '<br /><h3 style="color: red;">'
|
||||
+ 'This content requires the Adobe Flash Player. '
|
||||
+ '<a href=http://www.adobe.com/go/getflash/>Get Flash</a></h3>';
|
||||
document.write(alternateContent); // insert non-flash content
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -66,7 +66,7 @@ public class UtilitiesRequestHandler implements VisualizationRequestHandler {
|
|||
|
||||
|
||||
String filterRule = "?predicate = j.2:mainImage "
|
||||
+ "|| ?predicate = vitro:moniker "
|
||||
+ "|| ?predicate = core:preferredTitle "
|
||||
+ "|| ?predicate = rdfs:label";
|
||||
|
||||
QueryRunner<GenericQueryMap> profileQueryHandler =
|
||||
|
|
|
|||
Loading…
Add table
Reference in a new issue