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Paper revision (#131)

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* minor fix in Acknowledgement

* Added references

* Added 2 ORCIDs
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hauschke 2019-07-13 05:40:52 +02:00 • committed by hudajkhan
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@ -78,8 +78,10 @@ authors:
Orcid: 0000-0001-5059-4132 Orcid: 0000-0001-5059-4132
affiliation: 17 affiliation: 17
- name: Stefan Wolff - name: Stefan Wolff
Orcid: 0000-0003-0015-9671
affiliation: 18 affiliation: 18
- name: Rebecca Younes - name: Rebecca Younes
Orcid: 0000-0002-5105-1401
affiliation: 4 affiliation: 4
affiliations: affiliations:
- name: University of Florida, Gainesville, Florida, US - name: University of Florida, Gainesville, Florida, US
@ -125,20 +127,20 @@ bibliography: paper.bib
# Summary # Summary
VIVO [Pronunciation: vee-voh] is member-supported, enterprise open source VIVO [Pronunciation: vee-voh] is member-supported, enterprise open source
software and an ontology for representing scholarship. VIVO supports recording, editing, software and an ontology for representing scholarship. VIVO supports recording, editing,
searching, browsing and visualizing scholarly activity. VIVO encourages research searching, browsing and visualizing scholarly activity. VIVO encourages research
discovery, expert finding, network analysis and assessment of research impact. discovery, expert finding, network analysis and assessment of research impact.
VIVO is easily extended to support additional domains of scholarly activity. VIVO is easily extended to support additional domains of scholarly activity [@borner_vivo:_2012].
VIVO uses an ontology to represent people, papers, grants, projects, datasets, resources, VIVO uses an ontology to represent people, papers, grants, projects, datasets, resources,
and other elements of research and scholarship as linked open data. The ontology can and other elements of research and scholarship as linked open data. The ontology can
be used to create RDF that can be loaded into VIVO. VIVO RDF data is easily exported for be used to create RDF that can be loaded into VIVO. VIVO RDF data is easily exported for
use in other applications. use in other applications.
VIVO includes Vitro, a domain-free engine for managing linked open data, the JFact VIVO includes Vitro [@about_vitro:2018], a domain-free engine for managing linked open data, the JFact
reasoner, SolR for search, SPARQL query, Jena as a triple store, supporting both TDB reasoner [@jfact_2018], SolR [@solr_2018] for search, SPARQL query [@sparql_2018], Jena as a triple store [@jena_2018], supporting both TDB [@jena_tdb_2018]
and SDB on MySQL, uses D3 for visualizations, and provides multiple APIs, including and SDB [@jena_sdb_2018] on MySQL [@mysql_2018], uses D3 [@bostock_d3_2018] for visualizations, and provides multiple APIs, including
Triple Pattern Fragments for rapid remote access to specified data. Triple Pattern Fragments [@verborgh_triple_2016] for rapid remote access to specified data.
Using VIVO, organizations can represent the activities and accomplishments of their Using VIVO, organizations can represent the activities and accomplishments of their
scholars as linked open data, and share that data with others. scholars as linked open data, and share that data with others.
@ -146,12 +148,12 @@ scholars as linked open data, and share that data with others.
# Acknowledgements # Acknowledgements
The authors wish to acknowledge the foundational work done on VIVO, and VIVO concepts by The authors wish to acknowledge the foundational work done on VIVO, and VIVO concepts by
the team at the Mann Agricultural Library, Cornell University, led by Jon Corson-Rikert. the team at the Mann Agricultural Library, Cornell University, led by Jon Corson-Rikert.
The authors also wish to acknowledge NIH grant 1U24RR029822-01 to the first author, which The authors also wish to acknowledge NIH grant 1U24RR029822-01 to the first author, which
funded the work of more than 120 co-investigators in the further development of the funded the work of more than 120 co-investigators in the further development of the
VIVO software, and NIH grant xxxxxxx to Dr. Melissa Haendel of Oregon Health Science VIVO software, and to Dr. Melissa Haendel of Oregon Health Science
University which funded significant advances in the VIVO Integrated Semantic Framework, University for her significant advances in the VIVO Integrated Semantic Framework [@vivo-isf-ontology:_2018],
which VIVO uses to represent scholarship. Finally, the authors wish to acknowledge the which VIVO uses to represent scholarship. Finally, the authors wish to acknowledge the
many hundreds of members of the VIVO community around the world, who volunteer their many hundreds of members of the VIVO community around the world, who volunteer their
time and effort to advance the art of representing scholarship as linked open data. The time and effort to advance the art of representing scholarship as linked open data. The
work described here builds on the work of many others. work described here builds on the work of many others.