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updates for semantic services, temporarily commenting out concept semantic type which is still in progress

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This commit is contained in:
hudajkhan 2013-08-12 13:09:04 -04:00
parent a728d53c22
commit ad0ae3c09a
7 changed files with 165 additions and 40 deletions
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11
src/edu/cornell/mannlib/semservices/bo/Concept.java
View file

@ -17,7 +17,8 @@ public class Concept {
private List<String> narrowerURIList;
private List<String> exactMatchURIList;
private List<String> closeMatchURIList;
private List<String> altLabelList;
/**
* default constructor
*/
@ -149,4 +150,12 @@ public void setCloseMatchURIList(List<String> closeMatchURIList) {
this.closeMatchURIList = closeMatchURIList;
}
public List<String> getAltLabelList() {
return altLabelList;
}
public void setAltLabelList(List<String> altLabelList) {
this.altLabelList = altLabelList;
}
}

39
src/edu/cornell/mannlib/semservices/service/impl/AgrovocService.java
View file

@ -65,7 +65,6 @@ public class AgrovocService implements ExternalConceptService {
private final String codeName = "hasCodeAgrovoc";
private final String searchMode = "Exact Match";
protected final String dbpedia_endpoint = " http://dbpedia.org/sparql";
@Override
@ -94,16 +93,16 @@ public class AgrovocService implements ExternalConceptService {
return conceptList;
}
System.out.println("uri: "+uri);
//System.out.println("uri: "+uri);
SKOSDataset dataset = manager.loadDataset(uri);
for (SKOSConcept skosConcept : dataset.getSKOSConcepts()) {
Concept concept = new Concept();
System.out.println("Concept: " + skosConcept.getURI());
//System.out.println("Concept: " + skosConcept.getURI());
concept.setUri(skosConcept.getURI().toString());
concept.setConceptId(stripConceptId(skosConcept.getURI().toString()));
concept.setBestMatch("true");
concept.setDefinedBy(this.schemeUri);
concept.setDefinedBy(schemeUri);
concept.setSchemeURI(this.schemeUri);
concept.setType("");
String lang = "";
@ -126,6 +125,32 @@ public class AgrovocService implements ExternalConceptService {
}
}
// get altLabels
List<String> altLabelList = new ArrayList<String>();
for (SKOSLiteral literal : skosConcept
.getSKOSRelatedConstantByProperty(dataset, manager
.getSKOSDataFactory().getSKOSAltLabelProperty())) {
if (!literal.isTyped()) {
// if it has language
SKOSUntypedLiteral untypedLiteral = literal
.getAsSKOSUntypedLiteral();
if (untypedLiteral.hasLang()) {
lang = untypedLiteral.getLang();
} else {
lang = "";
}
}
//System.out.println("literal: "+ literal.getLiteral());
if (lang.equals("en")) {
//System.out.println("altLabel: " + literal.getLiteral());
altLabelList.add(literal.getLiteral());
}
}
concept.setAltLabelList(altLabelList);
// get the broader property URI
List<String> broaderURIList = new ArrayList<String>();
for (SKOSAnnotation annotation: skosConcept.getSKOSAnnotationsByURI(dataset, manager.getSKOSDataFactory().getSKOSBroaderProperty().getURI())) {
@ -347,9 +372,9 @@ public class AgrovocService implements ExternalConceptService {
public List<Concept> getConceptsByURIWithSparql(String uri) throws Exception {
//John Ferreira's original code has implementation
List<Concept> newConceptList = new ArrayList<Concept>();
return newConceptList;
// deprecating this method...just return an empty list
List<Concept> conceptList = new ArrayList<Concept>();
return conceptList;
}
protected String getAgrovocTermCode(String rdf) throws Exception {

35
src/edu/cornell/mannlib/semservices/service/impl/GemetService.java
View file

@ -34,8 +34,7 @@ public class GemetService implements ExternalConceptService {
private final String endpoint = "http://cr.eionet.europa.eu/sparql";
private final String schemeURI = "http://www.eionet.europa.eu/gemet/gemetThesaurus";
@Override
public List<Concept> getConcepts(String term) throws Exception {
List<Concept> conceptList = new ArrayList<Concept>();
@ -65,11 +64,12 @@ public class GemetService implements ExternalConceptService {
}
public List<Concept> getConceptsByURIWithSparql(String uri) throws Exception {
//John Ferreira's original code has implementation
List<Concept> newConceptList = new ArrayList<Concept>();
return newConceptList;
}
public List<Concept> getConceptsByURIWithSparql(String uri)
throws Exception {
// deprecating this method...just return an empty list
List<Concept> conceptList = new ArrayList<Concept>();
return conceptList;
}
/**
* @param results
@ -87,7 +87,7 @@ public class GemetService implements ExternalConceptService {
for (int i = 0; i < jsonArray.size(); i++) {
Concept concept = new Concept();
concept.setDefinedBy(this.schemeURI);
concept.setDefinedBy(schemeURI);
concept.setBestMatch("true");
JSONObject json = jsonArray.getJSONObject(i);
String uri = getJsonValue(json, "uri");
@ -124,7 +124,7 @@ public class GemetService implements ExternalConceptService {
for (String s: relatedURIList) {
System.out.println("related uri: "+s);
}*/
//String altLabels = getAllTranslationsForConcept(uri, "nonPreferredLabels");
conceptList.add(concept);
@ -218,9 +218,10 @@ public class GemetService implements ExternalConceptService {
"?concept_uri=" + concept_uri +
"&property_uri=" + property_uri +
"&language=en";
try {
result = getGemetResults(serviceUrl);
List<String> props = getPropertyFromJson(result);
} catch (Exception e) {
e.printStackTrace();
throw e;
@ -310,6 +311,7 @@ public class GemetService implements ExternalConceptService {
return results;
}
protected List<String> getRelatedUris(String json) {
List<String> uriList = new ArrayList<String>();
String uri = new String();
@ -327,6 +329,19 @@ public class GemetService implements ExternalConceptService {
}
protected List<String> getPropertyFromJson(String json) {
List<String> props = new ArrayList<String>();
JSONArray jsonArray = (JSONArray) JSONSerializer.toJSON(json);
if (jsonArray.size() == 0) {
return new ArrayList<String>();
}
for (int i = 0; i < jsonArray.size(); i++) {
JSONObject jsonObj = jsonArray.getJSONObject(i);
System.out.println(jsonObj.toString());
}
return props;
}
protected String stripConceptId(String uri) {
String conceptId = new String();
int lastslash = uri.lastIndexOf('/');

15
src/edu/cornell/mannlib/semservices/service/impl/UMLSService.java
View file

@ -29,14 +29,14 @@ public class UMLSService implements ExternalConceptService {
private static final String baseUri = "http://link.informatics.stonybrook.edu/umls/CUI/";
private static final String endpoint = "http://link.informatics.stonybrook.edu/sparql/";
private static final String schemeURI = "http://link.informatics.stonybrook.edu/umls";
@Override
public List<Concept> getConcepts(String term) throws Exception {
List<Concept> conceptList = new ArrayList<Concept>();
String results = null;
//Format in rdf/xml is possible but would require separate processing method
String dataUrl = submissionUrl + "textToProcess="
+ URLEncoder.encode(term, "UTF-8")
+ "&format=json";
@ -98,11 +98,12 @@ public class UMLSService implements ExternalConceptService {
* @param uri
* @return
*/
public List<Concept> getConceptsByURIWithSparql(String uri) throws Exception {
//John Ferreira's original code has implementation
List<Concept> newConceptList = new ArrayList<Concept>();
return newConceptList;
}
public List<Concept> getConceptsByURIWithSparql(String uri)
throws Exception {
// deprecating this method...just return an empty list
List<Concept> conceptList = new ArrayList<Concept>();
return conceptList;
}
/**
* @param results