1. Fix for grants obtaining publication results
This commit is contained in:
cdtank
parent
81736350bb
commit
aee1d00801
1 changed files with 494 additions and 481 deletions
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@ -1,481 +1,494 @@
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/* $This file is distributed under the terms of the license in /doc/license.txt$ */
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/* $This file is distributed under the terms of the license in /doc/license.txt$ */
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package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils;
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package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils;
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import java.util.Collection;
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import java.util.Collection;
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import java.util.HashMap;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.HashSet;
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import java.util.Map;
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import java.util.Map;
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import java.util.Set;
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import java.util.Set;
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import org.apache.commons.lang.StringUtils;
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import org.apache.commons.lang.StringUtils;
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import com.hp.hpl.jena.query.Dataset;
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import com.hp.hpl.jena.query.Dataset;
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import com.hp.hpl.jena.query.QuerySolution;
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import com.hp.hpl.jena.query.QuerySolution;
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import com.hp.hpl.jena.query.ResultSet;
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import com.hp.hpl.jena.query.ResultSet;
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import com.hp.hpl.jena.rdf.model.Model;
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import com.hp.hpl.jena.rdf.model.Model;
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import com.hp.hpl.jena.rdf.model.RDFNode;
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import com.hp.hpl.jena.rdf.model.RDFNode;
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import edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels;
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import edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels;
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import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
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import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
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import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
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import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.ModelConstructorUtilities;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.ModelConstructorUtilities;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationAssociatedPeopleModelWithTypesConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationAssociatedPeopleModelWithTypesConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationModelWithTypesConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationModelWithTypesConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationToGrantsForSubOrganizationsModelConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationToGrantsForSubOrganizationsModelConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationToPublicationsForSubOrganizationsModelConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationToPublicationsForSubOrganizationsModelConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.PersonToGrantsModelConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.PersonToGrantsModelConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.PersonToPublicationsModelConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.PersonToPublicationsModelConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Activity;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Activity;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Entity;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Entity;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.SubEntity;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.SubEntity;
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public class SelectOnModelUtilities {
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public class SelectOnModelUtilities {
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public static Entity getSubjectOrganizationHierarchy(Dataset dataset,
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public static Entity getSubjectOrganizationHierarchy(Dataset dataset,
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String subjectEntityURI) throws MalformedQueryParametersException {
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String subjectEntityURI) throws MalformedQueryParametersException {
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Model organizationModel = ModelConstructorUtilities
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Model organizationModel = ModelConstructorUtilities
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.getOrConstructModel(
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.getOrConstructModel(
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null,
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null,
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OrganizationModelWithTypesConstructor.MODEL_TYPE,
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OrganizationModelWithTypesConstructor.MODEL_TYPE,
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dataset);
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dataset);
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Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
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Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
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fieldLabelToOutputFieldLabel.put("organizationLabel", QueryFieldLabels.ORGANIZATION_LABEL);
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fieldLabelToOutputFieldLabel.put("organizationLabel", QueryFieldLabels.ORGANIZATION_LABEL);
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fieldLabelToOutputFieldLabel.put("subOrganization", QueryFieldLabels.SUBORGANIZATION_URL);
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fieldLabelToOutputFieldLabel.put("subOrganization", QueryFieldLabels.SUBORGANIZATION_URL);
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fieldLabelToOutputFieldLabel.put("subOrganizationLabel", QueryFieldLabels.SUBORGANIZATION_LABEL);
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fieldLabelToOutputFieldLabel.put("subOrganizationLabel", QueryFieldLabels.SUBORGANIZATION_LABEL);
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fieldLabelToOutputFieldLabel.put("subOrganizationTypeLabel", QueryFieldLabels.SUBORGANIZATION_TYPE_LABEL);
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fieldLabelToOutputFieldLabel.put("subOrganizationTypeLabel", QueryFieldLabels.SUBORGANIZATION_TYPE_LABEL);
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String whereClause = ""
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String whereClause = ""
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+ " <" + subjectEntityURI + "> rdfs:label ?organizationLabel . "
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+ " <" + subjectEntityURI + "> rdfs:label ?organizationLabel . "
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+ " <" + subjectEntityURI + "> core:hasSubOrganization ?subOrganization . "
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+ " <" + subjectEntityURI + "> core:hasSubOrganization ?subOrganization . "
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+ " ?subOrganization rdfs:label ?subOrganizationLabel . "
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+ " ?subOrganization rdfs:label ?subOrganizationLabel . "
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+ " ?subOrganization rdf:type ?subOrgType . "
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+ " ?subOrganization rdf:type ?subOrgType . "
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+ " ?subOrgType rdfs:label ?subOrganizationTypeLabel . ";
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+ " ?subOrgType rdfs:label ?subOrganizationTypeLabel . ";
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QueryRunner<ResultSet> subOrganizationsWithTypesQuery =
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QueryRunner<ResultSet> subOrganizationsWithTypesQuery =
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new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
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new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
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"",
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"",
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whereClause,
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whereClause,
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"",
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"",
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organizationModel);
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organizationModel);
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return getEntityWithSubOrganizations(subjectEntityURI,
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return getEntityWithSubOrganizations(subjectEntityURI,
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subOrganizationsWithTypesQuery.getQueryResult());
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subOrganizationsWithTypesQuery.getQueryResult());
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}
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}
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private static Entity getEntityWithSubOrganizations(String subjectEntityURI, ResultSet queryResult) {
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private static Entity getEntityWithSubOrganizations(String subjectEntityURI, ResultSet queryResult) {
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Entity entity = new Entity(subjectEntityURI);
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Entity entity = new Entity(subjectEntityURI);
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Map<String, SubEntity> subOrganizationURIToVO = new HashMap<String, SubEntity>();
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Map<String, SubEntity> subOrganizationURIToVO = new HashMap<String, SubEntity>();
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while (queryResult.hasNext()) {
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while (queryResult.hasNext()) {
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QuerySolution solution = queryResult.nextSolution();
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QuerySolution solution = queryResult.nextSolution();
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if (StringUtils.isEmpty(entity.getEntityLabel())) {
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if (StringUtils.isEmpty(entity.getEntityLabel())) {
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RDFNode organizationLabelNode = solution.get(QueryFieldLabels.ORGANIZATION_LABEL);
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RDFNode organizationLabelNode = solution.get(QueryFieldLabels.ORGANIZATION_LABEL);
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if (organizationLabelNode != null) {
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if (organizationLabelNode != null) {
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entity.setIndividualLabel(organizationLabelNode.toString());
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entity.setIndividualLabel(organizationLabelNode.toString());
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}
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}
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}
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}
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RDFNode subOrganizationNode = solution.get(QueryFieldLabels.SUBORGANIZATION_URL);
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RDFNode subOrganizationNode = solution.get(QueryFieldLabels.SUBORGANIZATION_URL);
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SubEntity subEntity;
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SubEntity subEntity;
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if (subOrganizationURIToVO.containsKey(subOrganizationNode.toString())) {
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if (subOrganizationURIToVO.containsKey(subOrganizationNode.toString())) {
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subEntity = subOrganizationURIToVO.get(subOrganizationNode.toString());
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subEntity = subOrganizationURIToVO.get(subOrganizationNode.toString());
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} else {
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} else {
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subEntity = new SubEntity(subOrganizationNode.toString());
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subEntity = new SubEntity(subOrganizationNode.toString());
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subEntity.setEntityClass(VOConstants.EntityClassType.ORGANIZATION);
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subEntity.setEntityClass(VOConstants.EntityClassType.ORGANIZATION);
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subOrganizationURIToVO.put(subOrganizationNode.toString(), subEntity);
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subOrganizationURIToVO.put(subOrganizationNode.toString(), subEntity);
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RDFNode subOrganizationLabelNode = solution.get(QueryFieldLabels.SUBORGANIZATION_LABEL);
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RDFNode subOrganizationLabelNode = solution.get(QueryFieldLabels.SUBORGANIZATION_LABEL);
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if (subOrganizationLabelNode != null) {
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if (subOrganizationLabelNode != null) {
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subEntity.setIndividualLabel(subOrganizationLabelNode.toString());
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subEntity.setIndividualLabel(subOrganizationLabelNode.toString());
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}
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}
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}
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}
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RDFNode subOrganizationTypeLabelNode = solution.get(QueryFieldLabels.SUBORGANIZATION_TYPE_LABEL);
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RDFNode subOrganizationTypeLabelNode = solution.get(QueryFieldLabels.SUBORGANIZATION_TYPE_LABEL);
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if (subOrganizationTypeLabelNode != null) {
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if (subOrganizationTypeLabelNode != null) {
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subEntity.addEntityTypeLabel(subOrganizationTypeLabelNode.toString());
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subEntity.addEntityTypeLabel(subOrganizationTypeLabelNode.toString());
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}
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}
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}
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}
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entity.addSubEntitities(subOrganizationURIToVO.values());
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entity.addSubEntitities(subOrganizationURIToVO.values());
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return entity;
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return entity;
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}
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}
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public static Entity getSubjectOrganizationAssociatedPeople(Dataset dataset,
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public static Entity getSubjectOrganizationAssociatedPeople(Dataset dataset,
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String subjectEntityURI) throws MalformedQueryParametersException {
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String subjectEntityURI) throws MalformedQueryParametersException {
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Model associatedPeopleModel = ModelConstructorUtilities
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Model associatedPeopleModel = ModelConstructorUtilities
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.getOrConstructModel(
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.getOrConstructModel(
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subjectEntityURI,
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subjectEntityURI,
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OrganizationAssociatedPeopleModelWithTypesConstructor.MODEL_TYPE,
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OrganizationAssociatedPeopleModelWithTypesConstructor.MODEL_TYPE,
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dataset);
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dataset);
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Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
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Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
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fieldLabelToOutputFieldLabel.put("organizationLabel", QueryFieldLabels.ORGANIZATION_LABEL);
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fieldLabelToOutputFieldLabel.put("organizationLabel", QueryFieldLabels.ORGANIZATION_LABEL);
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fieldLabelToOutputFieldLabel.put("person", QueryFieldLabels.PERSON_URL);
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fieldLabelToOutputFieldLabel.put("person", QueryFieldLabels.PERSON_URL);
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fieldLabelToOutputFieldLabel.put("personLabel", QueryFieldLabels.PERSON_LABEL);
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fieldLabelToOutputFieldLabel.put("personLabel", QueryFieldLabels.PERSON_LABEL);
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fieldLabelToOutputFieldLabel.put("personTypeLabel", QueryFieldLabels.PERSON_TYPE_LABEL);
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fieldLabelToOutputFieldLabel.put("personTypeLabel", QueryFieldLabels.PERSON_TYPE_LABEL);
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String whereClause = ""
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String whereClause = ""
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+ " <" + subjectEntityURI + "> rdfs:label ?organizationLabel . "
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+ " <" + subjectEntityURI + "> rdfs:label ?organizationLabel . "
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+ " <" + subjectEntityURI + "> vivosocnet:hasPersonWithActivity ?person . "
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+ " <" + subjectEntityURI + "> vivosocnet:hasPersonWithActivity ?person . "
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+ " ?person rdfs:label ?personLabel . "
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+ " ?person rdfs:label ?personLabel . "
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+ " ?person rdf:type ?personType . "
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+ " ?person rdf:type ?personType . "
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+ " ?personType rdfs:label ?personTypeLabel . ";
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+ " ?personType rdfs:label ?personTypeLabel . ";
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QueryRunner<ResultSet> associatedPeopleWithTypesQuery =
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QueryRunner<ResultSet> associatedPeopleWithTypesQuery =
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new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
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new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
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"",
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"",
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whereClause,
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whereClause,
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"",
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"",
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associatedPeopleModel);
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associatedPeopleModel);
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return getEntityWithAssociatedPeopleSubEntitities(subjectEntityURI, associatedPeopleWithTypesQuery.getQueryResult());
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return getEntityWithAssociatedPeopleSubEntitities(subjectEntityURI, associatedPeopleWithTypesQuery.getQueryResult());
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}
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}
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private static Entity getEntityWithAssociatedPeopleSubEntitities(
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private static Entity getEntityWithAssociatedPeopleSubEntitities(
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String subjectEntityURI, ResultSet queryResult) {
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String subjectEntityURI, ResultSet queryResult) {
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Entity entity = new Entity(subjectEntityURI);
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Entity entity = new Entity(subjectEntityURI);
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Map<String, SubEntity> associatedPeopleURIToVO = new HashMap<String, SubEntity>();
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Map<String, SubEntity> associatedPeopleURIToVO = new HashMap<String, SubEntity>();
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while (queryResult.hasNext()) {
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while (queryResult.hasNext()) {
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QuerySolution solution = queryResult.nextSolution();
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QuerySolution solution = queryResult.nextSolution();
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if (StringUtils.isEmpty(entity.getEntityLabel())) {
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if (StringUtils.isEmpty(entity.getEntityLabel())) {
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RDFNode organizationLabelNode = solution.get(QueryFieldLabels.ORGANIZATION_LABEL);
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RDFNode organizationLabelNode = solution.get(QueryFieldLabels.ORGANIZATION_LABEL);
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if (organizationLabelNode != null) {
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if (organizationLabelNode != null) {
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entity.setIndividualLabel(organizationLabelNode.toString());
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entity.setIndividualLabel(organizationLabelNode.toString());
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}
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}
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}
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}
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RDFNode personNode = solution.get(QueryFieldLabels.PERSON_URL);
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RDFNode personNode = solution.get(QueryFieldLabels.PERSON_URL);
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SubEntity subEntity;
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SubEntity subEntity;
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if (associatedPeopleURIToVO.containsKey(personNode.toString())) {
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if (associatedPeopleURIToVO.containsKey(personNode.toString())) {
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subEntity = associatedPeopleURIToVO.get(personNode.toString());
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subEntity = associatedPeopleURIToVO.get(personNode.toString());
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} else {
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} else {
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subEntity = new SubEntity(personNode.toString());
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subEntity = new SubEntity(personNode.toString());
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subEntity.setEntityClass(VOConstants.EntityClassType.PERSON);
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subEntity.setEntityClass(VOConstants.EntityClassType.PERSON);
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associatedPeopleURIToVO.put(personNode.toString(), subEntity);
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associatedPeopleURIToVO.put(personNode.toString(), subEntity);
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RDFNode personLabelNode = solution.get(QueryFieldLabels.PERSON_LABEL);
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RDFNode personLabelNode = solution.get(QueryFieldLabels.PERSON_LABEL);
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if (personLabelNode != null) {
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if (personLabelNode != null) {
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subEntity.setIndividualLabel(personLabelNode.toString());
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subEntity.setIndividualLabel(personLabelNode.toString());
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}
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}
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}
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}
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RDFNode personTypeLabelNode = solution.get(QueryFieldLabels.PERSON_TYPE_LABEL);
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RDFNode personTypeLabelNode = solution.get(QueryFieldLabels.PERSON_TYPE_LABEL);
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if (personTypeLabelNode != null) {
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if (personTypeLabelNode != null) {
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subEntity.addEntityTypeLabel(personTypeLabelNode.toString());
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subEntity.addEntityTypeLabel(personTypeLabelNode.toString());
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}
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}
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}
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}
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entity.addSubEntitities(associatedPeopleURIToVO.values());
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entity.addSubEntitities(associatedPeopleURIToVO.values());
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return entity;
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return entity;
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}
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}
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public static Map<String, Activity> getPublicationsForAllSubOrganizations(
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public static Map<String, Activity> getPublicationsForAllSubOrganizations(
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Dataset dataset, Entity organizationEntity)
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Dataset dataset, Entity organizationEntity)
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throws MalformedQueryParametersException {
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throws MalformedQueryParametersException {
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Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
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Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
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for (SubEntity subOrganization : organizationEntity.getSubEntities()) {
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for (SubEntity subOrganization : organizationEntity.getSubEntities()) {
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Model subOrganizationPublicationsModel = ModelConstructorUtilities
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Model subOrganizationPublicationsModel = ModelConstructorUtilities
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.getOrConstructModel(
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.getOrConstructModel(
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subOrganization.getIndividualURI(),
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subOrganization.getIndividualURI(),
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OrganizationToPublicationsForSubOrganizationsModelConstructor.MODEL_TYPE,
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OrganizationToPublicationsForSubOrganizationsModelConstructor.MODEL_TYPE,
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dataset);
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dataset);
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System.out.println("getting publications for " + subOrganization.getIndividualLabel());
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System.out.println("getting publications for " + subOrganization.getIndividualLabel());
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Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
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Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
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fieldLabelToOutputFieldLabel.put("document", QueryFieldLabels.DOCUMENT_URL);
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fieldLabelToOutputFieldLabel.put("document", QueryFieldLabels.DOCUMENT_URL);
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fieldLabelToOutputFieldLabel.put("documentLabel", QueryFieldLabels.DOCUMENT_LABEL);
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fieldLabelToOutputFieldLabel.put("documentLabel", QueryFieldLabels.DOCUMENT_LABEL);
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fieldLabelToOutputFieldLabel.put("documentPublicationDate", QueryFieldLabels.DOCUMENT_PUBLICATION_DATE);
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fieldLabelToOutputFieldLabel.put("documentPublicationDate", QueryFieldLabels.DOCUMENT_PUBLICATION_DATE);
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fieldLabelToOutputFieldLabel.put("lastCachedDateTime", QueryFieldLabels.LAST_CACHED_AT_DATETIME);
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String whereClause = ""
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+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasPersonWithPublication ?document . "
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String whereClause = ""
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+ " ?document rdfs:label ?documentLabel . "
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+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasPersonWithPublication ?document . "
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+ " OPTIONAL { "
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+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:lastCachedAt ?lastCachedDateTime . "
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+ " ?document core:dateTimeValue ?dateTimeValue . "
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+ " ?document rdfs:label ?documentLabel . "
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+ " ?dateTimeValue core:dateTime ?documentPublicationDate } . ";
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+ " OPTIONAL { "
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+ " ?document core:dateTimeValue ?dateTimeValue . "
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QueryRunner<ResultSet> subOrganizationPublicationsQuery =
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+ " ?dateTimeValue core:dateTime ?documentPublicationDate } . ";
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new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
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"",
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QueryRunner<ResultSet> subOrganizationPublicationsQuery =
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whereClause,
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new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
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"",
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"",
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subOrganizationPublicationsModel);
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whereClause,
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"",
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subOrganization.addActivities(getPublicationForEntity(
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subOrganizationPublicationsModel);
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subOrganizationPublicationsQuery.getQueryResult(),
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allDocumentURIToVOs));
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subOrganization.addActivities(getPublicationForEntity(
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||||||
|
subOrganizationPublicationsQuery.getQueryResult(),
|
||||||
}
|
allDocumentURIToVOs));
|
||||||
return allDocumentURIToVOs;
|
|
||||||
}
|
}
|
||||||
|
return allDocumentURIToVOs;
|
||||||
private static Collection<Activity> getPublicationForEntity(
|
}
|
||||||
ResultSet queryResult,
|
|
||||||
Map<String, Activity> allDocumentURIToVOs) {
|
private static Collection<Activity> getPublicationForEntity(
|
||||||
|
ResultSet queryResult,
|
||||||
Set<Activity> currentEntityPublications = new HashSet<Activity>();
|
Map<String, Activity> allDocumentURIToVOs) {
|
||||||
|
|
||||||
while (queryResult.hasNext()) {
|
Set<Activity> currentEntityPublications = new HashSet<Activity>();
|
||||||
|
|
||||||
QuerySolution solution = queryResult.nextSolution();
|
while (queryResult.hasNext()) {
|
||||||
|
|
||||||
RDFNode documentNode = solution.get(QueryFieldLabels.DOCUMENT_URL);
|
QuerySolution solution = queryResult.nextSolution();
|
||||||
Activity biboDocument;
|
|
||||||
|
RDFNode documentNode = solution.get(QueryFieldLabels.DOCUMENT_URL);
|
||||||
if (allDocumentURIToVOs.containsKey(documentNode.toString())) {
|
Activity biboDocument;
|
||||||
biboDocument = allDocumentURIToVOs.get(documentNode.toString());
|
|
||||||
|
if (allDocumentURIToVOs.containsKey(documentNode.toString())) {
|
||||||
} else {
|
biboDocument = allDocumentURIToVOs.get(documentNode.toString());
|
||||||
|
|
||||||
biboDocument = new Activity(documentNode.toString());
|
} else {
|
||||||
allDocumentURIToVOs.put(documentNode.toString(), biboDocument);
|
|
||||||
|
biboDocument = new Activity(documentNode.toString());
|
||||||
RDFNode publicationDateNode = solution.get(QueryFieldLabels
|
allDocumentURIToVOs.put(documentNode.toString(), biboDocument);
|
||||||
.DOCUMENT_PUBLICATION_DATE);
|
|
||||||
if (publicationDateNode != null) {
|
RDFNode publicationDateNode = solution.get(QueryFieldLabels
|
||||||
biboDocument.setActivityDate(publicationDateNode.toString());
|
.DOCUMENT_PUBLICATION_DATE);
|
||||||
}
|
if (publicationDateNode != null) {
|
||||||
}
|
biboDocument.setActivityDate(publicationDateNode.toString());
|
||||||
|
}
|
||||||
currentEntityPublications.add(biboDocument);
|
}
|
||||||
|
|
||||||
}
|
currentEntityPublications.add(biboDocument);
|
||||||
|
|
||||||
return currentEntityPublications;
|
}
|
||||||
}
|
|
||||||
|
return currentEntityPublications;
|
||||||
|
}
|
||||||
private static Collection<Activity> getGrantForEntity(
|
|
||||||
ResultSet queryResult,
|
|
||||||
Map<String, Activity> allGrantURIToVO) {
|
private static Collection<Activity> getGrantForEntity(
|
||||||
|
ResultSet queryResult,
|
||||||
Set<Activity> currentEntityGrants = new HashSet<Activity>();
|
Map<String, Activity> allGrantURIToVO) {
|
||||||
|
|
||||||
while (queryResult.hasNext()) {
|
Set<Activity> currentEntityGrants = new HashSet<Activity>();
|
||||||
|
|
||||||
QuerySolution solution = queryResult.nextSolution();
|
while (queryResult.hasNext()) {
|
||||||
|
|
||||||
RDFNode grantNode = solution.get(QueryFieldLabels.GRANT_URL);
|
QuerySolution solution = queryResult.nextSolution();
|
||||||
Activity coreGrant;
|
|
||||||
|
RDFNode grantNode = solution.get(QueryFieldLabels.GRANT_URL);
|
||||||
if (allGrantURIToVO.containsKey(grantNode.toString())) {
|
Activity coreGrant;
|
||||||
coreGrant = allGrantURIToVO.get(grantNode.toString());
|
|
||||||
|
if (allGrantURIToVO.containsKey(grantNode.toString())) {
|
||||||
} else {
|
coreGrant = allGrantURIToVO.get(grantNode.toString());
|
||||||
|
|
||||||
coreGrant = new Activity(grantNode.toString());
|
} else {
|
||||||
allGrantURIToVO.put(grantNode.toString(), coreGrant);
|
|
||||||
|
coreGrant = new Activity(grantNode.toString());
|
||||||
RDFNode grantStartDateNode = solution.get(QueryFieldLabels.ROLE_START_DATE);
|
allGrantURIToVO.put(grantNode.toString(), coreGrant);
|
||||||
|
|
||||||
if (grantStartDateNode != null) {
|
RDFNode grantStartDateNode = solution.get(QueryFieldLabels.ROLE_START_DATE);
|
||||||
coreGrant.setActivityDate(grantStartDateNode.toString());
|
|
||||||
} else {
|
if (grantStartDateNode != null) {
|
||||||
grantStartDateNode = solution
|
coreGrant.setActivityDate(grantStartDateNode.toString());
|
||||||
.get(QueryFieldLabels.GRANT_START_DATE);
|
} else {
|
||||||
if (grantStartDateNode != null) {
|
grantStartDateNode = solution
|
||||||
coreGrant.setActivityDate(grantStartDateNode.toString());
|
.get(QueryFieldLabels.GRANT_START_DATE);
|
||||||
}
|
if (grantStartDateNode != null) {
|
||||||
}
|
coreGrant.setActivityDate(grantStartDateNode.toString());
|
||||||
}
|
}
|
||||||
currentEntityGrants.add(coreGrant);
|
}
|
||||||
}
|
}
|
||||||
return currentEntityGrants;
|
currentEntityGrants.add(coreGrant);
|
||||||
}
|
}
|
||||||
|
return currentEntityGrants;
|
||||||
public static Map<String, Activity> getGrantsForAllSubOrganizations(
|
}
|
||||||
Dataset dataset, Entity organizationEntity)
|
|
||||||
throws MalformedQueryParametersException {
|
public static Map<String, Activity> getGrantsForAllSubOrganizations(
|
||||||
Map<String, Activity> allGrantURIToVO = new HashMap<String, Activity>();
|
Dataset dataset, Entity organizationEntity)
|
||||||
|
throws MalformedQueryParametersException {
|
||||||
for (SubEntity subOrganization : organizationEntity.getSubEntities()) {
|
Map<String, Activity> allGrantURIToVO = new HashMap<String, Activity>();
|
||||||
|
|
||||||
System.out.println("constructing grants for " + subOrganization.getIndividualLabel() + " :: " + subOrganization.getIndividualURI());
|
for (SubEntity subOrganization : organizationEntity.getSubEntities()) {
|
||||||
|
|
||||||
Model subOrganizationGrantsModel = ModelConstructorUtilities
|
System.out.println("constructing grants for " + subOrganization.getIndividualLabel() + " :: " + subOrganization.getIndividualURI());
|
||||||
.getOrConstructModel(
|
|
||||||
subOrganization.getIndividualURI(),
|
Model subOrganizationGrantsModel = ModelConstructorUtilities
|
||||||
OrganizationToGrantsForSubOrganizationsModelConstructor.MODEL_TYPE,
|
.getOrConstructModel(
|
||||||
dataset);
|
subOrganization.getIndividualURI(),
|
||||||
|
OrganizationToGrantsForSubOrganizationsModelConstructor.MODEL_TYPE,
|
||||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
dataset);
|
||||||
fieldLabelToOutputFieldLabel.put("grant", QueryFieldLabels.GRANT_URL);
|
|
||||||
fieldLabelToOutputFieldLabel.put("grantLabel", QueryFieldLabels.GRANT_LABEL);
|
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||||
fieldLabelToOutputFieldLabel.put("grantStartDate", QueryFieldLabels.GRANT_START_DATE);
|
fieldLabelToOutputFieldLabel.put("grant", QueryFieldLabels.GRANT_URL);
|
||||||
fieldLabelToOutputFieldLabel.put("roleStartDate", QueryFieldLabels.ROLE_START_DATE);
|
fieldLabelToOutputFieldLabel.put("grantLabel", QueryFieldLabels.GRANT_LABEL);
|
||||||
|
fieldLabelToOutputFieldLabel.put("grantStartDate", QueryFieldLabels.GRANT_START_DATE);
|
||||||
String whereClause = ""
|
fieldLabelToOutputFieldLabel.put("roleStartDate", QueryFieldLabels.ROLE_START_DATE);
|
||||||
+ "{"
|
|
||||||
+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasInvestigatorWithGrant ?grant . "
|
String whereClause = ""
|
||||||
+ " ?grant rdfs:label ?grantLabel . "
|
+ "{"
|
||||||
+ " OPTIONAL { "
|
+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasInvestigatorWithGrant ?grant . "
|
||||||
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
+ " ?grant rdfs:label ?grantLabel . "
|
||||||
+ " OPTIONAL { "
|
+ " OPTIONAL { "
|
||||||
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
||||||
+ "}"
|
+ " OPTIONAL { "
|
||||||
+ "UNION"
|
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
||||||
+ "{"
|
+ "}"
|
||||||
+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasPIWithGrant ?grant . "
|
+ "UNION"
|
||||||
+ " ?grant rdfs:label ?grantLabel . "
|
+ "{"
|
||||||
+ " OPTIONAL { "
|
+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasPIWithGrant ?grant . "
|
||||||
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
+ " ?grant rdfs:label ?grantLabel . "
|
||||||
+ " OPTIONAL { "
|
+ " OPTIONAL { "
|
||||||
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
||||||
+ "}"
|
+ " OPTIONAL { "
|
||||||
+ "UNION"
|
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
||||||
+ "{"
|
+ "}"
|
||||||
+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hascoPIWithGrant ?grant . "
|
+ "UNION"
|
||||||
+ " ?grant rdfs:label ?grantLabel . "
|
+ "{"
|
||||||
+ " OPTIONAL { "
|
+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hascoPIWithGrant ?grant . "
|
||||||
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
+ " ?grant rdfs:label ?grantLabel . "
|
||||||
+ " OPTIONAL { "
|
+ " OPTIONAL { "
|
||||||
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
||||||
+ "}";
|
+ " OPTIONAL { "
|
||||||
|
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
||||||
QueryRunner<ResultSet> subOrganizationGrantsQuery =
|
+ "}";
|
||||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
|
||||||
"",
|
QueryRunner<ResultSet> subOrganizationGrantsQuery =
|
||||||
whereClause,
|
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||||
"",
|
"",
|
||||||
subOrganizationGrantsModel);
|
whereClause,
|
||||||
|
"",
|
||||||
subOrganization.addActivities(getGrantForEntity(
|
subOrganizationGrantsModel);
|
||||||
subOrganizationGrantsQuery.getQueryResult(),
|
|
||||||
allGrantURIToVO));
|
subOrganization.addActivities(getGrantForEntity(
|
||||||
|
subOrganizationGrantsQuery.getQueryResult(),
|
||||||
}
|
allGrantURIToVO));
|
||||||
return allGrantURIToVO;
|
|
||||||
}
|
}
|
||||||
|
return allGrantURIToVO;
|
||||||
public static Map<String, Activity> getGrantForAssociatedPeople(
|
}
|
||||||
Dataset dataset, Collection<SubEntity> people)
|
|
||||||
throws MalformedQueryParametersException {
|
public static Map<String, Activity> getGrantsForAssociatedPeople(
|
||||||
Map<String, Activity> allGrantURIToVOs = new HashMap<String, Activity>();
|
Dataset dataset, Collection<SubEntity> people)
|
||||||
|
throws MalformedQueryParametersException {
|
||||||
for (SubEntity person : people) {
|
Map<String, Activity> allGrantURIToVOs = new HashMap<String, Activity>();
|
||||||
|
|
||||||
System.out.println("constructing grants for " + person.getIndividualLabel() + " :: " + person.getIndividualURI());
|
System.out.println("peopel for grants under consideration are ");
|
||||||
|
for (SubEntity person : people) {
|
||||||
Model personGrantsModel = ModelConstructorUtilities
|
System.out.println(person.getIndividualURI() + " -- " + person.getIndividualLabel());
|
||||||
.getOrConstructModel(
|
}
|
||||||
person.getIndividualURI(),
|
|
||||||
PersonToGrantsModelConstructor.MODEL_TYPE,
|
for (SubEntity person : people) {
|
||||||
dataset);
|
|
||||||
|
System.out.println("constructing grants for " + person.getIndividualLabel() + " :: " + person.getIndividualURI());
|
||||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
|
||||||
fieldLabelToOutputFieldLabel.put("grant", QueryFieldLabels.GRANT_URL);
|
long before = System.currentTimeMillis();
|
||||||
fieldLabelToOutputFieldLabel.put("grantLabel", QueryFieldLabels.GRANT_LABEL);
|
|
||||||
fieldLabelToOutputFieldLabel.put("grantStartDate", QueryFieldLabels.GRANT_START_DATE);
|
Model personGrantsModel = ModelConstructorUtilities
|
||||||
fieldLabelToOutputFieldLabel.put("roleStartDate", QueryFieldLabels.ROLE_START_DATE);
|
.getOrConstructModel(
|
||||||
|
person.getIndividualURI(),
|
||||||
String whereClause = ""
|
PersonToGrantsModelConstructor.MODEL_TYPE,
|
||||||
+ "{"
|
dataset);
|
||||||
+ " <" + person.getIndividualURI() + "> vivosocnet:hasGrantAsAnInvestigator ?grant . "
|
|
||||||
+ " ?grant rdfs:label ?grantLabel . "
|
System.out.print("\t construct took " + (System.currentTimeMillis() - before));
|
||||||
+ " OPTIONAL { "
|
|
||||||
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
before = System.currentTimeMillis();
|
||||||
+ " OPTIONAL { "
|
|
||||||
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||||
+ "}"
|
fieldLabelToOutputFieldLabel.put("grant", QueryFieldLabels.GRANT_URL);
|
||||||
+ "UNION"
|
fieldLabelToOutputFieldLabel.put("grantLabel", QueryFieldLabels.GRANT_LABEL);
|
||||||
+ "{"
|
fieldLabelToOutputFieldLabel.put("grantStartDate", QueryFieldLabels.GRANT_START_DATE);
|
||||||
+ " <" + person.getIndividualURI() + "> vivosocnet:hasGrantAsPI ?grant . "
|
fieldLabelToOutputFieldLabel.put("roleStartDate", QueryFieldLabels.ROLE_START_DATE);
|
||||||
+ " ?grant rdfs:label ?grantLabel . "
|
|
||||||
+ " OPTIONAL { "
|
String whereClause = ""
|
||||||
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
+ "{"
|
||||||
+ " OPTIONAL { "
|
+ " <" + person.getIndividualURI() + "> vivosocnet:hasGrantAsAnInvestigator ?grant . "
|
||||||
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
+ " ?grant rdfs:label ?grantLabel . "
|
||||||
+ "}"
|
+ " OPTIONAL { "
|
||||||
+ "UNION"
|
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
||||||
+ "{"
|
+ " OPTIONAL { "
|
||||||
+ " <" + person.getIndividualURI() + "> vivosocnet:hasGrantAsCoPI ?grant . "
|
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
||||||
+ " ?grant rdfs:label ?grantLabel . "
|
+ "}"
|
||||||
+ " OPTIONAL { "
|
+ "UNION"
|
||||||
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
+ "{"
|
||||||
+ " OPTIONAL { "
|
+ " <" + person.getIndividualURI() + "> vivosocnet:hasGrantAsPI ?grant . "
|
||||||
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
+ " ?grant rdfs:label ?grantLabel . "
|
||||||
+ "}";
|
+ " OPTIONAL { "
|
||||||
|
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
||||||
QueryRunner<ResultSet> personGrantsQuery =
|
+ " OPTIONAL { "
|
||||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
||||||
"",
|
+ "}"
|
||||||
whereClause,
|
+ "UNION"
|
||||||
"",
|
+ "{"
|
||||||
personGrantsModel);
|
+ " <" + person.getIndividualURI() + "> vivosocnet:hasGrantAsCoPI ?grant . "
|
||||||
|
+ " ?grant rdfs:label ?grantLabel . "
|
||||||
person.addActivities(getGrantForEntity(
|
+ " OPTIONAL { "
|
||||||
personGrantsQuery.getQueryResult(),
|
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
||||||
allGrantURIToVOs));
|
+ " OPTIONAL { "
|
||||||
|
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
||||||
}
|
+ "}";
|
||||||
return allGrantURIToVOs;
|
|
||||||
}
|
QueryRunner<ResultSet> personGrantsQuery =
|
||||||
|
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||||
public static Map<String, Activity> getPublicationsForAssociatedPeople(
|
"",
|
||||||
Dataset dataset, Collection<SubEntity> people)
|
whereClause,
|
||||||
throws MalformedQueryParametersException {
|
"",
|
||||||
Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
|
personGrantsModel);
|
||||||
|
|
||||||
for (SubEntity person : people) {
|
person.addActivities(getGrantForEntity(
|
||||||
|
personGrantsQuery.getQueryResult(),
|
||||||
Model personPublicationsModel = ModelConstructorUtilities
|
allGrantURIToVOs));
|
||||||
.getOrConstructModel(
|
|
||||||
person.getIndividualURI(),
|
System.out.println("\t || select took " + (System.currentTimeMillis() - before));
|
||||||
PersonToPublicationsModelConstructor.MODEL_TYPE,
|
|
||||||
dataset);
|
}
|
||||||
|
return allGrantURIToVOs;
|
||||||
System.out.println("getting publications for " + person.getIndividualLabel());
|
}
|
||||||
|
|
||||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
public static Map<String, Activity> getPublicationsForAssociatedPeople(
|
||||||
fieldLabelToOutputFieldLabel.put("document", QueryFieldLabels.DOCUMENT_URL);
|
Dataset dataset, Collection<SubEntity> people)
|
||||||
fieldLabelToOutputFieldLabel.put("documentLabel", QueryFieldLabels.DOCUMENT_LABEL);
|
throws MalformedQueryParametersException {
|
||||||
fieldLabelToOutputFieldLabel.put("documentPublicationDate", QueryFieldLabels.DOCUMENT_PUBLICATION_DATE);
|
Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
|
||||||
|
|
||||||
String whereClause = ""
|
for (SubEntity person : people) {
|
||||||
+ " <" + person.getIndividualURI() + "> vivosocnet:hasPublication ?document . "
|
|
||||||
+ " ?document rdfs:label ?documentLabel . "
|
Model personPublicationsModel = ModelConstructorUtilities
|
||||||
+ " OPTIONAL { "
|
.getOrConstructModel(
|
||||||
+ " ?document core:dateTimeValue ?dateTimeValue . "
|
person.getIndividualURI(),
|
||||||
+ " ?dateTimeValue core:dateTime ?documentPublicationDate } . ";
|
PersonToPublicationsModelConstructor.MODEL_TYPE,
|
||||||
|
dataset);
|
||||||
QueryRunner<ResultSet> personPublicationsQuery =
|
|
||||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
System.out.println("getting publications for " + person.getIndividualLabel());
|
||||||
"",
|
|
||||||
whereClause,
|
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||||
"",
|
fieldLabelToOutputFieldLabel.put("document", QueryFieldLabels.DOCUMENT_URL);
|
||||||
personPublicationsModel);
|
fieldLabelToOutputFieldLabel.put("documentLabel", QueryFieldLabels.DOCUMENT_LABEL);
|
||||||
|
fieldLabelToOutputFieldLabel.put("documentPublicationDate", QueryFieldLabels.DOCUMENT_PUBLICATION_DATE);
|
||||||
person.addActivities(getPublicationForEntity(
|
|
||||||
personPublicationsQuery.getQueryResult(),
|
String whereClause = ""
|
||||||
allDocumentURIToVOs));
|
+ " <" + person.getIndividualURI() + "> vivosocnet:hasPublication ?document . "
|
||||||
|
+ " ?document rdfs:label ?documentLabel . "
|
||||||
}
|
+ " OPTIONAL { "
|
||||||
return allDocumentURIToVOs;
|
+ " ?document core:dateTimeValue ?dateTimeValue . "
|
||||||
}
|
+ " ?dateTimeValue core:dateTime ?documentPublicationDate } . ";
|
||||||
|
|
||||||
}
|
QueryRunner<ResultSet> personPublicationsQuery =
|
||||||
|
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||||
|
"",
|
||||||
|
whereClause,
|
||||||
|
"",
|
||||||
|
personPublicationsModel);
|
||||||
|
|
||||||
|
person.addActivities(getPublicationForEntity(
|
||||||
|
personPublicationsQuery.getQueryResult(),
|
||||||
|
allDocumentURIToVOs));
|
||||||
|
}
|
||||||
|
return allDocumentURIToVOs;
|
||||||
|
}
|
||||||
|
}
|
||||||
Loading…
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Reference in a new issue