1. Development related to a prototype of Temporal vis for publications that will leverage the caching feature. Currently it uses the temporary cached models that are saved in a map.
This commit is contained in:
cdtank
parent
88aafb7dec
commit
af0f3e5a3a
26 changed files with 1732 additions and 50 deletions
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@ -31,6 +31,9 @@
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<bean id="entity_comparison"
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class="edu.cornell.mannlib.vitro.webapp.visualization.freemarker.entitycomparison.EntityPublicationCountRequestHandler" />
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<bean id="pub_temporal"
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class="edu.cornell.mannlib.vitro.webapp.visualization.freemarker.entitycomparison.cached.EntityPublicationRequestHandler" />
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<bean id="entity_grant_count"
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class="edu.cornell.mannlib.vitro.webapp.visualization.freemarker.entitygrantcount.EntityGrantCountRequestHandler" />
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@ -58,10 +61,21 @@
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<entry key="person_level">
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<ref bean="person_level"></ref>
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</entry>
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<entry key="entity_comparison">
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<ref bean="entity_comparison"></ref>
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</entry>
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<entry key="entity_comparison">
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<ref bean="entity_comparison"></ref>
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</entry>
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<!--
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<entry key="entity_comparison">
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<ref bean="pub_temporal"></ref>
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</entry>
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-->
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<entry key="pub_temporal">
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<ref bean="pub_temporal"></ref>
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</entry>
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<entry key="coprincipalinvestigator">
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<ref bean="coprincipalinvestigator"></ref>
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@ -0,0 +1,220 @@
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/* $This file is distributed under the terms of the license in /doc/license.txt$ */
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package edu.cornell.mannlib.vitro.webapp.controller.visualization.cacheintercept;
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import java.io.File;
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import java.io.FileNotFoundException;
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import java.io.FileOutputStream;
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import java.io.FileWriter;
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import java.io.InputStream;
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import java.io.OutputStream;
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import java.util.Iterator;
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import java.util.Scanner;
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import java.util.regex.Matcher;
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import com.hp.hpl.jena.query.ARQ;
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import com.hp.hpl.jena.query.Dataset;
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import com.hp.hpl.jena.query.Query;
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import com.hp.hpl.jena.query.QueryExecution;
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import com.hp.hpl.jena.query.QueryExecutionFactory;
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import com.hp.hpl.jena.query.QueryFactory;
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import com.hp.hpl.jena.query.QuerySolution;
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import com.hp.hpl.jena.query.ResultSet;
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import com.hp.hpl.jena.query.ResultSetFormatter;
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import com.hp.hpl.jena.rdf.model.Model;
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import com.hp.hpl.jena.rdf.model.Property;
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import com.hp.hpl.jena.rdf.model.RDFNode;
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import com.hp.hpl.jena.rdf.model.Resource;
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import com.hp.hpl.jena.rdf.model.Statement;
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import com.hp.hpl.jena.rdf.model.StmtIterator;
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import com.hp.hpl.jena.sparql.ARQConstants;
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import com.hp.hpl.jena.tdb.TDB;
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import com.hp.hpl.jena.tdb.TDBFactory;
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import com.hp.hpl.jena.util.FileManager;
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import com.hp.hpl.jena.vocabulary.VCARD;
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public class TDBResearch {
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static final String directory = "testdb/" ;
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public static void getModelInformation() {
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// Direct way: Make a TDB-back Jena model in the named directory.
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// String inputFileName = "query/entitygrants/select-all-grants.sparql";
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// String inputFileName = "query/entitypublications/select-all-publications-f.sparql";
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// String inputFileName = "query/organization/select-org-suborg.sparql";
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String inputFileName = "query/test.sparql";
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// String inputFileName = "query/subentitytypes/select-all-types.sparql";
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InputStream in = FileManager.get().open( inputFileName );
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if (in == null) {
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throw new IllegalArgumentException( "File: " + inputFileName + " not found");
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}
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Scanner scanner =
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new Scanner(FileManager.get().open( inputFileName )).useDelimiter("\\Z");
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String contents = scanner.next();
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// System.out.println(contents);
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scanner.close();
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Dataset ds = TDBFactory.createDataset(directory);
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Model model = ds.getNamedModel("publication");
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// organization publication
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// Model model = ds.getDefaultModel();
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// List<Statement> listStatements = model.listStatements().toList();
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//
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// for (Statement stmt : listStatements) {
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//
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// System.out.println(stmt);
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//
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// }
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// System.out.println(listStatements);
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// Potentially expensive query.
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String sparqlQueryString;
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// sparqlQueryString = "SELECT (count(*) AS ?count) { ?s ?p ?o }" ;
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sparqlQueryString = contents.replaceAll(Matcher.quoteReplacement("$URI$"), "http://vivo.ufl.edu/individual/CollegeofDentistry");
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// String sparqlQueryString = "SELECT * { GRAPH ?g { ?s ?p ?o } }" ;
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// See http://www.openjena.org/ARQ/app_api.html
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// String sparqlQueryString = "SELECT ?sub ?pre ?obj " + " { ?sub ?pre ?obj . }" ;
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Query query = QueryFactory.create(sparqlQueryString) ;
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// QueryExecution qexec = QueryExecutionFactory.create(query, ds);
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QueryExecution qexec = QueryExecutionFactory.create(query, model);
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ResultSet results = qexec.execSelect() ;
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// try {
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// OutputStream outputStream = new FileOutputStream("output/test.txt");
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// ResultSetFormatter.out(outputStream, results) ;
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// } catch (FileNotFoundException e) {
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// e.printStackTrace();
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// }
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//
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ResultSetFormatter.out(results) ;
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//
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// while (results.hasNext()) {
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////
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// QuerySolution solution = results.nextSolution();
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//
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// System.out.println("solution: " + solution.toString());
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//// System.out.println("------");
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// //System.out.println(solution.get("count"));
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//// System.out.println(solution.getResource("sub"));
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//// System.out.println(solution.get("pre"));
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//// System.out.println(solution.get("obj"));
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// }
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//
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qexec.close() ;
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ds.close();
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}
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public static void createModel() {
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// String commonFilePath = "data/entitygrants/"; entitypublications organization
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String commonFilePath = "data/organization/";
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String ontologyFilePath = "data/common/prefixes.n3";
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String[] inputFileName = {
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commonFilePath + "test-custom-props.n3",
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// commonFilePath + "college-education-pubs.n3",
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// commonFilePath + "college-pediatric-dentistry-pubs.n3",
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// commonFilePath + "college-dentistry-pubs.n3",
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// college-education-pubs.n3 test-custom-props.n3 ufl-orgs-types.n3
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};
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String organizationModel = "";
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Dataset ds = TDBFactory.createDataset(directory) ;
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// Model model = ds.getDefaultModel();
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// Model model = ds.getNamedModel("entitygrants"); organization publication
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Model model = ds.getNamedModel("publication");
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long before, after;
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// Iterator it = model.listStatements();
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//
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// while (it.hasNext()) {
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// System.out.println("org - " + it.next());
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// }
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//
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System.out.println("model size " + model.size());
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before = System.currentTimeMillis();
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InputStream in = FileManager.get().open(ontologyFilePath);
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if (in == null) {
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throw new IllegalArgumentException( "File: " + ontologyFilePath + " not found");
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}
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// read the RDF/XML file
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// model.read(in, null, "N3");
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for (String nm : inputFileName) {
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in = FileManager.get().open( nm );
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if (in == null) {
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throw new IllegalArgumentException( "File: " + nm + " not found");
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}
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// read the RDF/XML file
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model.read(in, null, "N3");
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// Resource johnSmith = model.createResource(personURI)
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// .addProperty(VCARD.FN, fullName)
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// .addProperty(VCARD.N,
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// model.createResource()
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// .addProperty(VCARD.Given, givenName)
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// .addProperty(VCARD.Family, familyName));
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//
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// System.out.println("create model: " + johnSmith);
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model.commit();
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}
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model.close();
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// it = model.listStatements();
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//
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// while (it.hasNext()) {
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// System.out.println("org deux - " + it.next());
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// }
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//
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System.out.println("model empty - " + model.isEmpty());
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System.out.println("read in model in tdb - " + (System.currentTimeMillis() - before));
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ds.close();
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}
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public static void printCurrentModels() {
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Dataset ds = TDBFactory.createDataset(directory) ;
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Iterator<String> listNames = ds.listNames();
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for (;listNames.hasNext();) {
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System.out.println(listNames.next());
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}
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ds.close();
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}
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}
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@ -4,6 +4,7 @@ package edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker;
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import java.io.IOException;
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import javax.servlet.ServletContext;
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import javax.servlet.ServletException;
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import javax.servlet.http.HttpServletRequest;
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import javax.servlet.http.HttpServletResponse;
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@ -38,6 +39,8 @@ public class AjaxVisualizationController extends FreemarkerHttpServlet {
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private static final Log log = LogFactory.getLog(AjaxVisualizationController.class.getName());
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protected static final Syntax SYNTAX = Syntax.syntaxARQ;
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public static ServletContext servletContext;
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@Override
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public void doGet(HttpServletRequest request, HttpServletResponse response)
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@ -2,6 +2,8 @@
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package edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker;
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import javax.servlet.ServletContext;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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@ -31,6 +33,8 @@ public class StandardVisualizationController extends FreemarkerHttpServlet {
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private static final Log log = LogFactory.getLog(StandardVisualizationController.class.getName());
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protected static final Syntax SYNTAX = Syntax.syntaxARQ;
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public static ServletContext servletContext;
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@Override
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protected ResponseValues processRequest(VitroRequest vreq) {
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@ -42,6 +46,8 @@ public class StandardVisualizationController extends FreemarkerHttpServlet {
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VisualizationRequestHandler visRequestHandler =
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getVisualizationRequestHandler(vreq);
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servletContext = getServletContext();
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if (visRequestHandler != null) {
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/*
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@ -58,7 +64,6 @@ public class StandardVisualizationController extends FreemarkerHttpServlet {
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vreq);
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}
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}
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@ -41,7 +41,9 @@ public class QueryConstants {
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put("vivo", "http://vivo.library.cornell.edu/ns/0.1#");
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put("j.1", "http://aims.fao.org/aos/geopolitical.owl#");
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put("j.2", "http://vitro.mannlib.cornell.edu/ns/vitro/public#");
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put("afn", "http://jena.hpl.hp.com/ARQ/function#");
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put("vivosocnet", "http://vivo.cns.iu.edu/ns/#");
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} };
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public static String getSparqlPrefixQuery() {
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@ -172,7 +172,7 @@ public class EntityPublicationCountQueryRunner implements QueryRunner<Entity> {
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}
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entity.addActivity(biboDocument);
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// entity.addActivity(biboDocument);
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}
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if (subentityURLToVO.size() == 0 && personURLToVO.size() == 0) {
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@ -53,6 +53,7 @@ public class EntityPublicationCountRequestHandler implements
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vitroRequest);
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}
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return prepareStandaloneMarkupResponse(vitroRequest, entityURI);
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}
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@ -282,7 +283,7 @@ public class EntityPublicationCountRequestHandler implements
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}
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entityJson.setYearToActivityCount(yearPubCount);
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entityJson.getOrganizationType().addAll(
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entityJson.getOrganizationTypes().addAll(
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subOrganizationTypesResult.get(entityJson.getLabel()));
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entityJson.setEntityURI(subentity.getIndividualURI());
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@ -0,0 +1,633 @@
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/* $This file is distributed under the terms of the license in /doc/license.txt$ */
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package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.entitycomparison.cached;
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import java.util.ArrayList;
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import java.util.Collection;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import org.apache.commons.lang.StringEscapeUtils;
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import org.apache.commons.lang.StringUtils;
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import org.apache.commons.logging.Log;
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import com.google.gson.Gson;
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import com.hp.hpl.jena.query.Dataset;
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import com.hp.hpl.jena.query.QuerySolution;
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import com.hp.hpl.jena.query.ResultSet;
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import com.hp.hpl.jena.rdf.model.Model;
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import com.hp.hpl.jena.rdf.model.RDFNode;
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import edu.cornell.mannlib.vitro.webapp.beans.Portal;
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import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
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import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
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import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
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import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.DataVisualizationController;
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import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
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import edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels;
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import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
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import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.entitycomparison.EntityComparisonUtilityFunctions;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.ModelConstructorUtilities;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationAssociatedPeopleModelWithTypesConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationModelWithTypesConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationToPublicationsForSubOrganizationsModelConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.PersonToPublicationsModelConstructor;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Activity;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.ConstructedModelTracker;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Entity;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.JsonObject;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.SubEntity;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.GenericQueryRunnerOnModel;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.QueryRunner;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.UtilityFunctions;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.VisualizationRequestHandler;
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public class EntityPublicationRequestHandler implements
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VisualizationRequestHandler {
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public enum DataVisMode {
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CSV, JSON
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};
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@Override
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public ResponseValues generateStandardVisualization(
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VitroRequest vitroRequest, Log log, Dataset dataset)
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throws MalformedQueryParametersException {
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String entityURI = vitroRequest
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.getParameter(VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY);
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if (StringUtils.isBlank(entityURI)) {
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entityURI = EntityComparisonUtilityFunctions
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.getStaffProvidedOrComputedHighestLevelOrganization(
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log,
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dataset,
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vitroRequest);
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}
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System.out.println("current models in the system are");
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for (Map.Entry<String, Model> entry : ConstructedModelTracker.getAllModels().entrySet()) {
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System.out.println(entry.getKey() + " -> " + entry.getValue().size());
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}
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return prepareStandaloneMarkupResponse(vitroRequest, entityURI);
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}
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private Map<String, String> getSubjectEntityAndGenerateDataResponse(
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VitroRequest vitroRequest, Log log, Dataset dataset,
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String subjectEntityURI, DataVisMode visMode)
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throws MalformedQueryParametersException {
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Entity organizationEntity = getSubjectOrganizationHierarchy(dataset,
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subjectEntityURI);
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if (organizationEntity.getSubEntities() == null) {
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if (DataVisMode.JSON.equals(visMode)) {
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return prepareStandaloneDataErrorResponse();
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} else {
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return prepareDataErrorResponse();
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}
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}
|
||||
|
||||
Map<String, Activity> documentURIForAssociatedPeopleTOVO = new HashMap<String, Activity>();
|
||||
Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
|
||||
|
||||
allDocumentURIToVOs = getPublicationsForAllSubOrganizations(dataset, organizationEntity);
|
||||
|
||||
Collection<SubEntity> associatedPeople = getSubjectOrganizationAssociatedPeople(dataset, subjectEntityURI);
|
||||
|
||||
if (!associatedPeople.isEmpty()) {
|
||||
|
||||
documentURIForAssociatedPeopleTOVO = getPublicationsForAssociatedPeople(dataset, associatedPeople);
|
||||
organizationEntity.addSubEntitities(associatedPeople);
|
||||
}
|
||||
|
||||
if (allDocumentURIToVOs.isEmpty() && documentURIForAssociatedPeopleTOVO.isEmpty()) {
|
||||
|
||||
if (DataVisMode.JSON.equals(visMode)) {
|
||||
return prepareStandaloneDataErrorResponse();
|
||||
} else {
|
||||
return prepareDataErrorResponse();
|
||||
}
|
||||
|
||||
} else {
|
||||
|
||||
if (DataVisMode.JSON.equals(visMode)) {
|
||||
return prepareStandaloneDataResponse(vitroRequest, organizationEntity);
|
||||
} else {
|
||||
return prepareDataResponse(organizationEntity);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Provides response when json file containing the publication count over the
|
||||
* years is requested.
|
||||
*
|
||||
* @param entity
|
||||
* @param subentities
|
||||
* @param subOrganizationTypesResult
|
||||
*/
|
||||
private Map<String, String> prepareDataResponse(Entity entity) {
|
||||
|
||||
String entityLabel = entity.getEntityLabel();
|
||||
|
||||
/*
|
||||
* To make sure that null/empty records for entity names do not cause any mischief.
|
||||
* */
|
||||
if (StringUtils.isBlank(entityLabel)) {
|
||||
entityLabel = "no-organization";
|
||||
}
|
||||
|
||||
String outputFileName = UtilityFunctions.slugify(entityLabel)
|
||||
+ "_publications-per-year" + ".csv";
|
||||
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_NAME_KEY,
|
||||
outputFileName);
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
|
||||
getEntityPublicationsPerYearCSVContent(entity));
|
||||
return fileData;
|
||||
}
|
||||
|
||||
private Map<String, String> prepareDataErrorResponse() {
|
||||
|
||||
String outputFileName = "no-organization_publications-per-year.csv";
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_NAME_KEY,
|
||||
outputFileName);
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY, "");
|
||||
return fileData;
|
||||
}
|
||||
|
||||
|
||||
private Map<String, Activity> getPublicationsForAllSubOrganizations(
|
||||
Dataset dataset, Entity organizationEntity)
|
||||
throws MalformedQueryParametersException {
|
||||
Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
|
||||
|
||||
for (SubEntity subOrganization : organizationEntity.getSubEntities()) {
|
||||
|
||||
Model subOrganizationPublicationsModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
subOrganization.getIndividualURI(),
|
||||
OrganizationToPublicationsForSubOrganizationsModelConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
System.out.println("getting publications for " + subOrganization.getIndividualLabel());
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("document", QueryFieldLabels.DOCUMENT_URL);
|
||||
fieldLabelToOutputFieldLabel.put("documentLabel", QueryFieldLabels.DOCUMENT_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("documentPublicationDate", QueryFieldLabels.DOCUMENT_PUBLICATION_DATE);
|
||||
|
||||
String whereClause = ""
|
||||
+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasPersonWithPublication ?document . "
|
||||
+ " ?document rdfs:label ?documentLabel . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?document core:dateTimeValue ?dateTimeValue . "
|
||||
+ " ?dateTimeValue core:dateTime ?documentPublicationDate } . ";
|
||||
|
||||
QueryRunner<ResultSet> subOrganizationPublicationsQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
subOrganizationPublicationsModel);
|
||||
|
||||
subOrganization.addActivities(getPublicationForEntity(
|
||||
subOrganizationPublicationsQuery.getQueryResult(),
|
||||
allDocumentURIToVOs));
|
||||
|
||||
}
|
||||
return allDocumentURIToVOs;
|
||||
}
|
||||
|
||||
|
||||
private Map<String, Activity> getPublicationsForAssociatedPeople(
|
||||
Dataset dataset, Collection<SubEntity> people)
|
||||
throws MalformedQueryParametersException {
|
||||
Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
|
||||
|
||||
for (SubEntity person : people) {
|
||||
|
||||
Model personPublicationsModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
person.getIndividualURI(),
|
||||
PersonToPublicationsModelConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
System.out.println("getting publications for " + person.getIndividualLabel());
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("document", QueryFieldLabels.DOCUMENT_URL);
|
||||
fieldLabelToOutputFieldLabel.put("documentLabel", QueryFieldLabels.DOCUMENT_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("documentPublicationDate", QueryFieldLabels.DOCUMENT_PUBLICATION_DATE);
|
||||
|
||||
String whereClause = ""
|
||||
+ " <" + person.getIndividualURI() + "> vivosocnet:hasPublication ?document . "
|
||||
+ " ?document rdfs:label ?documentLabel . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?document core:dateTimeValue ?dateTimeValue . "
|
||||
+ " ?dateTimeValue core:dateTime ?documentPublicationDate } . ";
|
||||
|
||||
QueryRunner<ResultSet> personPublicationsQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
personPublicationsModel);
|
||||
|
||||
person.addActivities(getPublicationForEntity(
|
||||
personPublicationsQuery.getQueryResult(),
|
||||
allDocumentURIToVOs));
|
||||
|
||||
}
|
||||
return allDocumentURIToVOs;
|
||||
}
|
||||
|
||||
private Entity getSubjectOrganizationHierarchy(Dataset dataset,
|
||||
String subjectEntityURI) throws MalformedQueryParametersException {
|
||||
Model organizationModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
null,
|
||||
OrganizationModelWithTypesConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("organizationLabel", QueryFieldLabels.ORGANIZATION_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("subOrganization", QueryFieldLabels.SUBORGANIZATION_URL);
|
||||
fieldLabelToOutputFieldLabel.put("subOrganizationLabel", QueryFieldLabels.SUBORGANIZATION_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("subOrganizationTypeLabel", QueryFieldLabels.SUBORGANIZATION_TYPE_LABEL);
|
||||
|
||||
String whereClause = ""
|
||||
+ " <" + subjectEntityURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + subjectEntityURI + "> core:hasSubOrganization ?subOrganization . "
|
||||
+ " ?subOrganization rdfs:label ?subOrganizationLabel . "
|
||||
+ " ?subOrganization rdf:type ?subOrgType . "
|
||||
+ " ?subOrgType rdfs:label ?subOrganizationTypeLabel . ";
|
||||
|
||||
QueryRunner<ResultSet> subOrganizationsWithTypesQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
organizationModel);
|
||||
|
||||
Entity organizationEntity = generateEntity(subjectEntityURI,
|
||||
subOrganizationsWithTypesQuery.getQueryResult());
|
||||
return organizationEntity;
|
||||
}
|
||||
|
||||
private Collection<SubEntity> getSubjectOrganizationAssociatedPeople(Dataset dataset,
|
||||
String subjectEntityURI) throws MalformedQueryParametersException {
|
||||
Model associatedPeopleModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
subjectEntityURI,
|
||||
OrganizationAssociatedPeopleModelWithTypesConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("organizationLabel", QueryFieldLabels.ORGANIZATION_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("person", QueryFieldLabels.PERSON_URL);
|
||||
fieldLabelToOutputFieldLabel.put("personLabel", QueryFieldLabels.PERSON_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("personTypeLabel", QueryFieldLabels.PERSON_TYPE_LABEL);
|
||||
|
||||
String whereClause = ""
|
||||
+ " <" + subjectEntityURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + subjectEntityURI + "> vivosocnet:hasPersonWithActivity ?person . "
|
||||
+ " ?person rdfs:label ?personLabel . "
|
||||
+ " ?person rdf:type ?personType . "
|
||||
+ " ?personType rdfs:label ?personTypeLabel . ";
|
||||
|
||||
QueryRunner<ResultSet> associatedPeopleWithTypesQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
associatedPeopleModel);
|
||||
|
||||
return getAssociatedPeopleSubEntitities(associatedPeopleWithTypesQuery.getQueryResult());
|
||||
}
|
||||
|
||||
private Collection<SubEntity> getAssociatedPeopleSubEntitities(
|
||||
ResultSet queryResult) {
|
||||
|
||||
Map<String, SubEntity> associatedPeopleURIToVO = new HashMap<String, SubEntity>();
|
||||
|
||||
while (queryResult.hasNext()) {
|
||||
|
||||
QuerySolution solution = queryResult.nextSolution();
|
||||
|
||||
RDFNode personNode = solution.get(QueryFieldLabels.PERSON_URL);
|
||||
|
||||
SubEntity subEntity;
|
||||
|
||||
if (associatedPeopleURIToVO.containsKey(personNode.toString())) {
|
||||
|
||||
subEntity = associatedPeopleURIToVO.get(personNode.toString());
|
||||
|
||||
} else {
|
||||
|
||||
subEntity = new SubEntity(personNode.toString());
|
||||
associatedPeopleURIToVO.put(personNode.toString(), subEntity);
|
||||
|
||||
RDFNode personLabelNode = solution.get(QueryFieldLabels.PERSON_LABEL);
|
||||
if (personLabelNode != null) {
|
||||
subEntity.setIndividualLabel(personLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
RDFNode personTypeLabelNode = solution.get(QueryFieldLabels.PERSON_TYPE_LABEL);
|
||||
if (personTypeLabelNode != null) {
|
||||
subEntity.addEntityTypeLabel(personTypeLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
return associatedPeopleURIToVO.values();
|
||||
}
|
||||
|
||||
private Collection<Activity> getPublicationForEntity(
|
||||
ResultSet queryResult,
|
||||
Map<String, Activity> allDocumentURIToVOs) {
|
||||
|
||||
Set<Activity> currentEntityPublications = new HashSet<Activity>();
|
||||
|
||||
while (queryResult.hasNext()) {
|
||||
|
||||
QuerySolution solution = queryResult.nextSolution();
|
||||
|
||||
RDFNode documentNode = solution.get(QueryFieldLabels.DOCUMENT_URL);
|
||||
Activity biboDocument;
|
||||
|
||||
if (allDocumentURIToVOs.containsKey(documentNode.toString())) {
|
||||
biboDocument = allDocumentURIToVOs.get(documentNode.toString());
|
||||
|
||||
} else {
|
||||
|
||||
biboDocument = new Activity(documentNode.toString());
|
||||
allDocumentURIToVOs.put(documentNode.toString(), biboDocument);
|
||||
|
||||
RDFNode publicationDateNode = solution.get(QueryFieldLabels
|
||||
.DOCUMENT_PUBLICATION_DATE);
|
||||
if (publicationDateNode != null) {
|
||||
biboDocument.setActivityDate(publicationDateNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
currentEntityPublications.add(biboDocument);
|
||||
|
||||
}
|
||||
|
||||
return currentEntityPublications;
|
||||
}
|
||||
|
||||
private Entity generateEntity(String subjectEntityURI, ResultSet queryResult) {
|
||||
|
||||
Entity entity = new Entity(subjectEntityURI);
|
||||
Map<String, SubEntity> subOrganizationURIToVO = new HashMap<String, SubEntity>();
|
||||
|
||||
while (queryResult.hasNext()) {
|
||||
|
||||
QuerySolution solution = queryResult.nextSolution();
|
||||
|
||||
if (StringUtils.isEmpty(entity.getEntityLabel())) {
|
||||
|
||||
RDFNode organizationLabelNode = solution.get(QueryFieldLabels.ORGANIZATION_LABEL);
|
||||
if (organizationLabelNode != null) {
|
||||
entity.setIndividualLabel(organizationLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
RDFNode subOrganizationNode = solution.get(QueryFieldLabels.SUBORGANIZATION_URL);
|
||||
|
||||
SubEntity subEntity;
|
||||
|
||||
if (subOrganizationURIToVO.containsKey(subOrganizationNode.toString())) {
|
||||
|
||||
subEntity = subOrganizationURIToVO.get(subOrganizationNode.toString());
|
||||
|
||||
} else {
|
||||
|
||||
subEntity = new SubEntity(subOrganizationNode.toString());
|
||||
subOrganizationURIToVO.put(subOrganizationNode.toString(), subEntity);
|
||||
|
||||
RDFNode subOrganizationLabelNode = solution.get(QueryFieldLabels.SUBORGANIZATION_LABEL);
|
||||
if (subOrganizationLabelNode != null) {
|
||||
subEntity.setIndividualLabel(subOrganizationLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
RDFNode subOrganizationTypeLabelNode = solution.get(QueryFieldLabels.SUBORGANIZATION_TYPE_LABEL);
|
||||
if (subOrganizationTypeLabelNode != null) {
|
||||
subEntity.addEntityTypeLabel(subOrganizationTypeLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
entity.addSubEntitities(subOrganizationURIToVO.values());
|
||||
|
||||
return entity;
|
||||
}
|
||||
|
||||
private Map<String, String> prepareStandaloneDataErrorResponse() {
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
|
||||
"{\"error\" : \"No Publications for this Organization found in VIVO.\"}");
|
||||
return fileData;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Map<String, String> generateDataVisualization(
|
||||
VitroRequest vitroRequest, Log log, Dataset dataset)
|
||||
throws MalformedQueryParametersException {
|
||||
|
||||
String entityURI = vitroRequest
|
||||
.getParameter(VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY);
|
||||
|
||||
/*
|
||||
* This will provide the data in json format mainly used for standalone tmeporal vis.
|
||||
* */
|
||||
if (VisualizationFrameworkConstants.TEMPORAL_GRAPH_JSON_DATA_VIS_MODE
|
||||
.equalsIgnoreCase(vitroRequest.getParameter(
|
||||
VisualizationFrameworkConstants.VIS_MODE_KEY))) {
|
||||
|
||||
if (StringUtils.isNotBlank(entityURI)) {
|
||||
|
||||
return getSubjectEntityAndGenerateDataResponse(
|
||||
vitroRequest,
|
||||
log,
|
||||
dataset,
|
||||
entityURI,
|
||||
DataVisMode.JSON);
|
||||
} else {
|
||||
|
||||
return getSubjectEntityAndGenerateDataResponse(
|
||||
vitroRequest,
|
||||
log,
|
||||
dataset,
|
||||
EntityComparisonUtilityFunctions
|
||||
.getStaffProvidedOrComputedHighestLevelOrganization(
|
||||
log,
|
||||
dataset,
|
||||
vitroRequest),
|
||||
DataVisMode.JSON);
|
||||
}
|
||||
|
||||
} else {
|
||||
/*
|
||||
* This provides csv download files for the content in the tables.
|
||||
* */
|
||||
|
||||
return getSubjectEntityAndGenerateDataResponse(
|
||||
vitroRequest,
|
||||
log,
|
||||
dataset,
|
||||
entityURI,
|
||||
DataVisMode.CSV);
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Override
|
||||
public Object generateAjaxVisualization(VitroRequest vitroRequest, Log log,
|
||||
Dataset dataset) throws MalformedQueryParametersException {
|
||||
throw new UnsupportedOperationException("Entity Pub Count does not provide Ajax Response.");
|
||||
}
|
||||
|
||||
private Map<String, String> prepareStandaloneDataResponse(
|
||||
VitroRequest vitroRequest,
|
||||
Entity entity) {
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
|
||||
writePublicationsOverTimeJSON(vitroRequest,
|
||||
entity.getSubEntities()));
|
||||
return fileData;
|
||||
}
|
||||
|
||||
private TemplateResponseValues prepareStandaloneMarkupResponse(VitroRequest vreq,
|
||||
String entityURI) {
|
||||
|
||||
Portal portal = vreq.getPortal();
|
||||
String standaloneTemplate = "entityComparisonOnPublicationsStandalone.ftl";
|
||||
|
||||
String organizationLabel = EntityComparisonUtilityFunctions
|
||||
.getEntityLabelFromDAO(vreq,
|
||||
entityURI);
|
||||
|
||||
Map<String, Object> body = new HashMap<String, Object>();
|
||||
body.put("portalBean", portal);
|
||||
body.put("title", organizationLabel + " - Temporal Graph Visualization");
|
||||
body.put("organizationURI", entityURI);
|
||||
body.put("organizationLabel", organizationLabel);
|
||||
|
||||
return new TemplateResponseValues(standaloneTemplate, body);
|
||||
}
|
||||
|
||||
/**
|
||||
* Function to generate a json file for year <-> publication count mapping.
|
||||
* @param vreq
|
||||
* @param subentities
|
||||
* @param subOrganizationTypesResult
|
||||
*/
|
||||
private String writePublicationsOverTimeJSON(VitroRequest vreq,
|
||||
Set<SubEntity> subentities) {
|
||||
|
||||
Gson json = new Gson();
|
||||
Set<JsonObject> subEntitiesJson = new HashSet<JsonObject>();
|
||||
|
||||
for (SubEntity subentity : subentities) {
|
||||
|
||||
System.out.println("in write json current sub entity " + subentity.getIndividualLabel());
|
||||
|
||||
JsonObject entityJson = new JsonObject(
|
||||
subentity.getIndividualLabel());
|
||||
|
||||
List<List<Integer>> yearPubCount = new ArrayList<List<Integer>>();
|
||||
|
||||
for (Map.Entry<String, Integer> pubEntry : UtilityFunctions
|
||||
.getYearToActivityCount(subentity.getActivities())
|
||||
.entrySet()) {
|
||||
|
||||
List<Integer> currentPubYear = new ArrayList<Integer>();
|
||||
if (pubEntry.getKey().equals(VOConstants.DEFAULT_PUBLICATION_YEAR)) {
|
||||
currentPubYear.add(-1);
|
||||
} else {
|
||||
currentPubYear.add(Integer.parseInt(pubEntry.getKey()));
|
||||
}
|
||||
|
||||
currentPubYear.add(pubEntry.getValue());
|
||||
yearPubCount.add(currentPubYear);
|
||||
}
|
||||
|
||||
entityJson.setYearToActivityCount(yearPubCount);
|
||||
|
||||
entityJson.setOrganizationTypes(subentity.getEntityTypeLabels());
|
||||
|
||||
|
||||
entityJson.setEntityURI(subentity.getIndividualURI());
|
||||
|
||||
boolean isPerson = UtilityFunctions.isEntityAPerson(vreq, subentity);
|
||||
|
||||
if (isPerson) {
|
||||
entityJson.setVisMode("PERSON");
|
||||
} else {
|
||||
entityJson.setVisMode("ORGANIZATION");
|
||||
}
|
||||
subEntitiesJson.add(entityJson);
|
||||
}
|
||||
return json.toJson(subEntitiesJson);
|
||||
}
|
||||
|
||||
private String getEntityPublicationsPerYearCSVContent(Entity entity) {
|
||||
|
||||
StringBuilder csvFileContent = new StringBuilder();
|
||||
|
||||
csvFileContent.append("Entity Name, Publication Count, Entity Type\n");
|
||||
|
||||
for (SubEntity subEntity : entity.getSubEntities()) {
|
||||
|
||||
csvFileContent.append(StringEscapeUtils.escapeCsv(subEntity.getIndividualLabel()));
|
||||
csvFileContent.append(", ");
|
||||
csvFileContent.append(subEntity.getActivities().size());
|
||||
csvFileContent.append(", ");
|
||||
|
||||
String allTypes = StringUtils.join(subEntity.getEntityTypeLabels(), "; ");
|
||||
|
||||
csvFileContent.append(StringEscapeUtils.escapeCsv(allTypes));
|
||||
csvFileContent.append("\n");
|
||||
}
|
||||
return csvFileContent.toString();
|
||||
}
|
||||
}
|
||||
|
|
@ -219,7 +219,7 @@ public class EntityGrantCountQueryRunner implements QueryRunner<Entity> {
|
|||
|
||||
}
|
||||
|
||||
entity.addActivity(grant);
|
||||
// entity.addActivity(grant);
|
||||
}
|
||||
|
||||
if (subentityURLToVO.size() == 0 && personURLToVO.size() == 0) {
|
||||
|
|
|
|||
|
|
@ -283,7 +283,7 @@ public class EntityGrantCountRequestHandler implements
|
|||
}
|
||||
|
||||
entityJson.setYearToActivityCount(yearGrantCount);
|
||||
entityJson.getOrganizationType().addAll(
|
||||
entityJson.getOrganizationTypes().addAll(
|
||||
subOrganizationTypesResult.get(entityJson.getLabel()));
|
||||
|
||||
entityJson.setEntityURI(subentity.getIndividualURI());
|
||||
|
|
|
|||
|
|
@ -0,0 +1,31 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor;
|
||||
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.ModelFactoryInterface;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.OrganizationAssociatedPeopleModelWithTypesFactory;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.OrganizationModelWithTypesFactory;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.OrganizationToPublicationsForSubOrganizationsFactory;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.PersonToPublicationsFactory;
|
||||
|
||||
public class ModelConstructorUtilities {
|
||||
|
||||
@SuppressWarnings("serial")
|
||||
private static final Map<String, ModelFactoryInterface> modelTypeIdentifierToFactory = new HashMap<String, ModelFactoryInterface>() {{
|
||||
put(PersonToPublicationsModelConstructor.MODEL_TYPE, new PersonToPublicationsFactory());
|
||||
put(OrganizationToPublicationsForSubOrganizationsModelConstructor.MODEL_TYPE, new OrganizationToPublicationsForSubOrganizationsFactory());
|
||||
put(OrganizationAssociatedPeopleModelWithTypesConstructor.MODEL_TYPE, new OrganizationAssociatedPeopleModelWithTypesFactory());
|
||||
put(OrganizationModelWithTypesConstructor.MODEL_TYPE, new OrganizationModelWithTypesFactory());
|
||||
}};
|
||||
|
||||
public static Model getOrConstructModel(String uri, String modelType, Dataset dataset)
|
||||
throws MalformedQueryParametersException {
|
||||
return modelTypeIdentifierToFactory.get(modelType).getOrCreateModel(uri, dataset);
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,111 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor;
|
||||
|
||||
import org.apache.commons.logging.Log;
|
||||
import org.apache.commons.logging.LogFactory;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.query.Query;
|
||||
import com.hp.hpl.jena.query.QueryExecution;
|
||||
import com.hp.hpl.jena.query.QueryExecutionFactory;
|
||||
import com.hp.hpl.jena.query.QueryFactory;
|
||||
import com.hp.hpl.jena.query.Syntax;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
import com.hp.hpl.jena.rdf.model.ModelFactory;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryConstants;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.ModelConstructor;
|
||||
|
||||
public class OrganizationAssociatedPeopleModelWithTypesConstructor implements ModelConstructor {
|
||||
|
||||
protected static final Syntax SYNTAX = Syntax.syntaxARQ;
|
||||
|
||||
public static final String MODEL_TYPE = "ORGANIZATION_ASSOCIATED_MODEL_WITH_TYPES";
|
||||
|
||||
private Dataset dataset;
|
||||
|
||||
private Model constructedModel;
|
||||
|
||||
private Log log = LogFactory.getLog(OrganizationAssociatedPeopleModelWithTypesConstructor.class.getName());
|
||||
|
||||
private long before, after;
|
||||
|
||||
private String organizationURI;
|
||||
|
||||
public OrganizationAssociatedPeopleModelWithTypesConstructor(String organizationURI, Dataset dataset) {
|
||||
this.dataset = dataset;
|
||||
this.organizationURI = organizationURI;
|
||||
}
|
||||
|
||||
private String constructAssociatedPeopleForOrganizationWithTypesQuery() {
|
||||
return ""
|
||||
+ " CONSTRUCT { "
|
||||
+ " <" + organizationURI + "> rdf:type foaf:Organization . "
|
||||
+ " <" + organizationURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + organizationURI + "> vivosocnet:hasPersonWithActivity ?Person . "
|
||||
+ " ?Person rdfs:label ?personLabel. "
|
||||
+ " ?Person rdf:type ?personType . "
|
||||
+ " ?personType rdfs:label ?personTypeLabel . "
|
||||
+ " } "
|
||||
+ " WHERE { "
|
||||
+ " <" + organizationURI + "> rdf:type foaf:Organization . "
|
||||
+ " <" + organizationURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " OPTIONAL { "
|
||||
+ " <" + organizationURI + "> core:organizationForPosition ?Position . "
|
||||
+ " ?Position core:positionForPerson ?Person . "
|
||||
+ " ?Person rdfs:label ?personLabel. "
|
||||
+ " ?Person rdf:type ?personType . "
|
||||
+ " ?personType rdfs:label ?personTypeLabel . "
|
||||
+ " } "
|
||||
+ " } ";
|
||||
|
||||
}
|
||||
|
||||
private Model executeQuery(String constructQuery) {
|
||||
|
||||
System.out.println("in constructed model for associated people for organization");
|
||||
|
||||
Model constructedModel = ModelFactory.createDefaultModel();
|
||||
|
||||
before = System.currentTimeMillis();
|
||||
log.debug("CONSTRUCT query string : " + constructQuery);
|
||||
|
||||
Query query = null;
|
||||
|
||||
try {
|
||||
query = QueryFactory.create(QueryConstants.getSparqlPrefixQuery()
|
||||
+ constructQuery, SYNTAX);
|
||||
} catch (Throwable th) {
|
||||
log.error("Could not create CONSTRUCT SPARQL query for query "
|
||||
+ "string. " + th.getMessage());
|
||||
log.error(constructQuery);
|
||||
}
|
||||
|
||||
QueryExecution qe = QueryExecutionFactory.create(query, dataset);
|
||||
|
||||
try {
|
||||
qe.execConstruct(constructedModel);
|
||||
} finally {
|
||||
qe.close();
|
||||
}
|
||||
|
||||
after = System.currentTimeMillis();
|
||||
log.debug("Time taken to execute the CONSTRUCT queries is in milliseconds: "
|
||||
+ (after - before));
|
||||
|
||||
return constructedModel;
|
||||
}
|
||||
|
||||
public Model getConstructedModel() throws MalformedQueryParametersException {
|
||||
|
||||
if (constructedModel != null && !constructedModel.isEmpty()) {
|
||||
return constructedModel;
|
||||
} else {
|
||||
constructedModel = executeQuery(constructAssociatedPeopleForOrganizationWithTypesQuery());
|
||||
return constructedModel;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,118 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor;
|
||||
|
||||
import org.apache.commons.logging.Log;
|
||||
import org.apache.commons.logging.LogFactory;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.query.Query;
|
||||
import com.hp.hpl.jena.query.QueryExecution;
|
||||
import com.hp.hpl.jena.query.QueryExecutionFactory;
|
||||
import com.hp.hpl.jena.query.QueryFactory;
|
||||
import com.hp.hpl.jena.query.Syntax;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
import com.hp.hpl.jena.rdf.model.ModelFactory;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryConstants;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.CachedModelConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.ModelConstructor;
|
||||
|
||||
public class OrganizationModelWithTypesConstructor implements ModelConstructor {
|
||||
|
||||
protected static final Syntax SYNTAX = Syntax.syntaxARQ;
|
||||
|
||||
public static final String MODEL_TYPE = "ORGANIZATION_MODEL_WITH_TYPES";
|
||||
|
||||
private Dataset dataset;
|
||||
|
||||
private Model constructedModel;
|
||||
|
||||
private Log log = LogFactory.getLog(OrganizationModelWithTypesConstructor.class.getName());
|
||||
|
||||
private long before, after;
|
||||
|
||||
public OrganizationModelWithTypesConstructor(Dataset dataset) {
|
||||
this.dataset = dataset;
|
||||
}
|
||||
|
||||
/**
|
||||
* This constructor is present so that we can abstract out the model construction process.
|
||||
* @param uri
|
||||
* @param dataset
|
||||
*/
|
||||
public OrganizationModelWithTypesConstructor(String uri, Dataset dataset) {
|
||||
this.dataset = dataset;
|
||||
}
|
||||
|
||||
private String constructAllSubOrganizationsWithTypesQuery() {
|
||||
return ""
|
||||
+ " CONSTRUCT { "
|
||||
+ " ?organization rdf:type foaf:Organization . "
|
||||
+ " ?organization rdfs:label ?organizationLabel . "
|
||||
+ " ?organization core:hasSubOrganization ?subOrganization . "
|
||||
+ " ?subOrganization rdfs:label ?subOrganizationLabel . "
|
||||
+ " ?subOrganization rdf:type ?subOrganizationType . "
|
||||
+ " ?subOrganizationType rdfs:label ?subOrganizationTypeLabel . "
|
||||
+ " } "
|
||||
+ " WHERE { "
|
||||
+ " ?organization rdf:type foaf:Organization . "
|
||||
+ " ?organization rdfs:label ?organizationLabel . "
|
||||
+ " "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?organization core:hasSubOrganization ?subOrganization . "
|
||||
+ " ?subOrganization rdfs:label ?subOrganizationLabel . "
|
||||
+ " ?subOrganization rdf:type ?subOrganizationType . "
|
||||
+ " ?subOrganizationType rdfs:label ?subOrganizationTypeLabel . "
|
||||
+ " } "
|
||||
+ " } ";
|
||||
|
||||
}
|
||||
|
||||
private Model executeQuery(String constructQuery) {
|
||||
|
||||
System.out.println("in constructed model fior organization");
|
||||
|
||||
Model constructedModel = ModelFactory.createDefaultModel();
|
||||
|
||||
before = System.currentTimeMillis();
|
||||
log.debug("CONSTRUCT query string : " + constructQuery);
|
||||
|
||||
Query query = null;
|
||||
|
||||
try {
|
||||
query = QueryFactory.create(QueryConstants.getSparqlPrefixQuery()
|
||||
+ constructQuery, SYNTAX);
|
||||
} catch (Throwable th) {
|
||||
log.error("Could not create CONSTRUCT SPARQL query for query "
|
||||
+ "string. " + th.getMessage());
|
||||
log.error(constructQuery);
|
||||
}
|
||||
|
||||
QueryExecution qe = QueryExecutionFactory.create(query, dataset);
|
||||
|
||||
try {
|
||||
qe.execConstruct(constructedModel);
|
||||
} finally {
|
||||
qe.close();
|
||||
}
|
||||
|
||||
after = System.currentTimeMillis();
|
||||
log.debug("Time taken to execute the CONSTRUCT queries is in milliseconds: "
|
||||
+ (after - before));
|
||||
|
||||
return constructedModel;
|
||||
}
|
||||
|
||||
public Model getConstructedModel() throws MalformedQueryParametersException {
|
||||
|
||||
if (constructedModel != null && !constructedModel.isEmpty()) {
|
||||
return constructedModel;
|
||||
} else {
|
||||
constructedModel = executeQuery(constructAllSubOrganizationsWithTypesQuery());
|
||||
return constructedModel;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,108 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor;
|
||||
|
||||
import org.apache.commons.logging.Log;
|
||||
import org.apache.commons.logging.LogFactory;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.query.Query;
|
||||
import com.hp.hpl.jena.query.QueryExecution;
|
||||
import com.hp.hpl.jena.query.QueryExecutionFactory;
|
||||
import com.hp.hpl.jena.query.QueryFactory;
|
||||
import com.hp.hpl.jena.query.Syntax;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
import com.hp.hpl.jena.rdf.model.ModelFactory;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryConstants;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.ModelConstructor;
|
||||
|
||||
public class OrganizationToPublicationsForSubOrganizationsModelConstructor implements ModelConstructor {
|
||||
|
||||
protected static final Syntax SYNTAX = Syntax.syntaxARQ;
|
||||
|
||||
private Dataset dataset;
|
||||
|
||||
public static final String MODEL_TYPE = "ORGANIZATION_TO_PUBLICATIONS_FOR_SUBORGANIZATIONS";
|
||||
|
||||
private String organizationURI;
|
||||
|
||||
private Log log = LogFactory.getLog(OrganizationToPublicationsForSubOrganizationsModelConstructor.class.getName());
|
||||
|
||||
private long before, after;
|
||||
|
||||
public OrganizationToPublicationsForSubOrganizationsModelConstructor(String organizationURI, Dataset dataset) {
|
||||
this.organizationURI = organizationURI;
|
||||
this.dataset = dataset;
|
||||
}
|
||||
|
||||
private String constructOrganizationToPublicationsPublicationInformationQuery() {
|
||||
|
||||
return ""
|
||||
+ " CONSTRUCT { "
|
||||
+ " <" + organizationURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + organizationURI + "> vivosocnet:lastCachedAt ?now . "
|
||||
+ " <" + organizationURI + "> vivosocnet:hasPersonWithPublication ?Document . "
|
||||
+ " ?Document rdf:type bibo:Document . "
|
||||
+ " ?Document rdfs:label ?DocumentLabel . "
|
||||
+ " ?Document core:dateTimeValue ?dateTimeValue . "
|
||||
+ " ?dateTimeValue core:dateTime ?publicationDate . "
|
||||
+ " } "
|
||||
+ " WHERE { "
|
||||
+ " <" + organizationURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + organizationURI + "> core:hasSubOrganization* ?subOrganization . "
|
||||
+ " ?subOrganization core:organizationForPosition ?Position . "
|
||||
+ " ?Position core:positionForPerson ?Person . "
|
||||
+ " ?Person core:authorInAuthorship ?Resource . "
|
||||
+ " ?Resource core:linkedInformationResource ?Document . "
|
||||
+ " ?Document rdfs:label ?DocumentLabel . "
|
||||
+ " "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?Document core:dateTimeValue ?dateTimeValue . "
|
||||
+ " ?dateTimeValue core:dateTime ?publicationDate . "
|
||||
+ " } "
|
||||
+ " "
|
||||
+ " LET(?now := afn:now()) "
|
||||
+ " } ";
|
||||
|
||||
}
|
||||
|
||||
private Model executeQuery(String constructQuery) {
|
||||
|
||||
System.out.println("in constructed model fior orgh to publications fo " + organizationURI);
|
||||
|
||||
Model constructedModel = ModelFactory.createDefaultModel();
|
||||
|
||||
before = System.currentTimeMillis();
|
||||
log.debug("CONSTRUCT query string : " + constructQuery);
|
||||
|
||||
Query query = null;
|
||||
|
||||
try {
|
||||
query = QueryFactory.create(QueryConstants.getSparqlPrefixQuery()
|
||||
+ constructQuery, SYNTAX);
|
||||
} catch (Throwable th) {
|
||||
log.error("Could not create CONSTRUCT SPARQL query for query "
|
||||
+ "string. " + th.getMessage());
|
||||
log.error(constructQuery);
|
||||
}
|
||||
|
||||
QueryExecution qe = QueryExecutionFactory.create(query, dataset);
|
||||
|
||||
try {
|
||||
qe.execConstruct(constructedModel);
|
||||
} finally {
|
||||
qe.close();
|
||||
}
|
||||
|
||||
after = System.currentTimeMillis();
|
||||
log.debug("Time taken to execute the CONSTRUCT queries is in milliseconds: "
|
||||
+ (after - before));
|
||||
|
||||
return constructedModel;
|
||||
}
|
||||
|
||||
public Model getConstructedModel() throws MalformedQueryParametersException {
|
||||
return executeQuery(constructOrganizationToPublicationsPublicationInformationQuery());
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,102 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor;
|
||||
|
||||
import org.apache.commons.logging.Log;
|
||||
import org.apache.commons.logging.LogFactory;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.query.Query;
|
||||
import com.hp.hpl.jena.query.QueryExecution;
|
||||
import com.hp.hpl.jena.query.QueryExecutionFactory;
|
||||
import com.hp.hpl.jena.query.QueryFactory;
|
||||
import com.hp.hpl.jena.query.Syntax;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
import com.hp.hpl.jena.rdf.model.ModelFactory;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryConstants;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.ModelConstructor;
|
||||
|
||||
public class PersonToPublicationsModelConstructor implements ModelConstructor {
|
||||
|
||||
protected static final Syntax SYNTAX = Syntax.syntaxARQ;
|
||||
|
||||
private Dataset dataset;
|
||||
|
||||
public static final String MODEL_TYPE = "PERSON_TO_PUBLICATIONS";
|
||||
|
||||
private String personURI;
|
||||
|
||||
private Log log = LogFactory.getLog(PersonToPublicationsModelConstructor.class.getName());
|
||||
|
||||
private long before, after;
|
||||
|
||||
public PersonToPublicationsModelConstructor(String personURI, Dataset dataset) {
|
||||
this.personURI = personURI;
|
||||
this.dataset = dataset;
|
||||
}
|
||||
|
||||
private String constructPersonToPublicationsWithPublicationInformationQuery() {
|
||||
|
||||
return ""
|
||||
+ " CONSTRUCT { "
|
||||
+ " <" + personURI + "> vivosocnet:lastCachedAt ?now . "
|
||||
+ " <" + personURI + "> vivosocnet:hasPublication ?Document . "
|
||||
+ " ?Document rdf:type bibo:Document . "
|
||||
+ " ?Document rdfs:label ?DocumentLabel . "
|
||||
+ " ?Document core:dateTimeValue ?dateTimeValue . "
|
||||
+ " ?dateTimeValue core:dateTime ?publicationDate . "
|
||||
+ " } "
|
||||
+ " WHERE { "
|
||||
+ " <" + personURI + "> core:authorInAuthorship ?Resource . "
|
||||
+ " ?Resource core:linkedInformationResource ?Document . "
|
||||
+ " ?Document rdfs:label ?DocumentLabel . "
|
||||
+ " "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?Document core:dateTimeValue ?dateTimeValue . "
|
||||
+ " ?dateTimeValue core:dateTime ?publicationDate . "
|
||||
+ " } "
|
||||
+ " "
|
||||
+ " LET(?now := afn:now()) "
|
||||
+ " } ";
|
||||
}
|
||||
|
||||
private Model executeQuery(String constructQuery) {
|
||||
|
||||
System.out.println("in constructed model for person to publications " + personURI);
|
||||
|
||||
Model constructedModel = ModelFactory.createDefaultModel();
|
||||
|
||||
before = System.currentTimeMillis();
|
||||
log.debug("CONSTRUCT query string : " + constructQuery);
|
||||
|
||||
Query query = null;
|
||||
|
||||
try {
|
||||
query = QueryFactory.create(QueryConstants.getSparqlPrefixQuery()
|
||||
+ constructQuery, SYNTAX);
|
||||
} catch (Throwable th) {
|
||||
log.error("Could not create CONSTRUCT SPARQL query for query "
|
||||
+ "string. " + th.getMessage());
|
||||
log.error(constructQuery);
|
||||
}
|
||||
|
||||
QueryExecution qe = QueryExecutionFactory.create(query, dataset);
|
||||
|
||||
try {
|
||||
qe.execConstruct(constructedModel);
|
||||
} finally {
|
||||
qe.close();
|
||||
}
|
||||
|
||||
after = System.currentTimeMillis();
|
||||
log.debug("Time taken to execute the CONSTRUCT queries is in milliseconds: "
|
||||
+ (after - before));
|
||||
|
||||
return constructedModel;
|
||||
}
|
||||
|
||||
public Model getConstructedModel() throws MalformedQueryParametersException {
|
||||
return executeQuery(constructPersonToPublicationsWithPublicationInformationQuery());
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,13 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
|
||||
public interface ModelFactoryInterface {
|
||||
|
||||
public Model getOrCreateModel(String uri, Dataset dataset) throws MalformedQueryParametersException;
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,46 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationAssociatedPeopleModelWithTypesConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.ConstructedModelTracker;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.ModelConstructor;
|
||||
|
||||
public class OrganizationAssociatedPeopleModelWithTypesFactory implements
|
||||
ModelFactoryInterface {
|
||||
|
||||
@Override
|
||||
public Model getOrCreateModel(String uri, Dataset dataset)
|
||||
throws MalformedQueryParametersException {
|
||||
|
||||
Model candidateModel = ConstructedModelTracker.getModel(
|
||||
ConstructedModelTracker
|
||||
.generateModelIdentifier(
|
||||
uri,
|
||||
OrganizationAssociatedPeopleModelWithTypesConstructor.MODEL_TYPE));
|
||||
|
||||
if (candidateModel != null) {
|
||||
|
||||
return candidateModel;
|
||||
|
||||
} else {
|
||||
|
||||
ModelConstructor model = new OrganizationAssociatedPeopleModelWithTypesConstructor(uri, dataset);
|
||||
|
||||
Model constructedModel = model.getConstructedModel();
|
||||
ConstructedModelTracker.trackModel(
|
||||
ConstructedModelTracker
|
||||
.generateModelIdentifier(
|
||||
uri,
|
||||
OrganizationAssociatedPeopleModelWithTypesConstructor.MODEL_TYPE),
|
||||
constructedModel);
|
||||
|
||||
return constructedModel;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,42 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationModelWithTypesConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.ConstructedModelTracker;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.ModelConstructor;
|
||||
|
||||
public class OrganizationModelWithTypesFactory implements ModelFactoryInterface {
|
||||
|
||||
@Override
|
||||
public Model getOrCreateModel(String uri, Dataset dataset) throws MalformedQueryParametersException {
|
||||
|
||||
Model candidateModel = ConstructedModelTracker.getModel(
|
||||
ConstructedModelTracker
|
||||
.generateModelIdentifier(
|
||||
null,
|
||||
OrganizationModelWithTypesConstructor.MODEL_TYPE));
|
||||
|
||||
if (candidateModel != null) {
|
||||
|
||||
return candidateModel;
|
||||
|
||||
} else {
|
||||
|
||||
ModelConstructor model = new OrganizationModelWithTypesConstructor(dataset);
|
||||
Model constructedModel = model.getConstructedModel();
|
||||
|
||||
ConstructedModelTracker.trackModel(
|
||||
ConstructedModelTracker
|
||||
.generateModelIdentifier(
|
||||
null,
|
||||
OrganizationModelWithTypesConstructor.MODEL_TYPE),
|
||||
constructedModel);
|
||||
|
||||
return constructedModel;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,46 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationToPublicationsForSubOrganizationsModelConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.ConstructedModelTracker;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.ModelConstructor;
|
||||
|
||||
public class OrganizationToPublicationsForSubOrganizationsFactory implements
|
||||
ModelFactoryInterface {
|
||||
|
||||
@Override
|
||||
public Model getOrCreateModel(String uri, Dataset dataset)
|
||||
throws MalformedQueryParametersException {
|
||||
|
||||
Model candidateModel = ConstructedModelTracker.getModel(
|
||||
ConstructedModelTracker
|
||||
.generateModelIdentifier(
|
||||
uri,
|
||||
OrganizationToPublicationsForSubOrganizationsModelConstructor.MODEL_TYPE));
|
||||
|
||||
if (candidateModel != null) {
|
||||
|
||||
return candidateModel;
|
||||
|
||||
} else {
|
||||
|
||||
ModelConstructor model = new OrganizationToPublicationsForSubOrganizationsModelConstructor(uri, dataset);
|
||||
|
||||
Model constructedModel = model.getConstructedModel();
|
||||
ConstructedModelTracker.trackModel(
|
||||
ConstructedModelTracker
|
||||
.generateModelIdentifier(
|
||||
uri,
|
||||
OrganizationToPublicationsForSubOrganizationsModelConstructor.MODEL_TYPE),
|
||||
constructedModel);
|
||||
|
||||
return constructedModel;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,45 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.PersonToPublicationsModelConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.ConstructedModelTracker;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.ModelConstructor;
|
||||
|
||||
public class PersonToPublicationsFactory implements ModelFactoryInterface {
|
||||
|
||||
@Override
|
||||
public Model getOrCreateModel(String uri, Dataset dataset)
|
||||
throws MalformedQueryParametersException {
|
||||
|
||||
Model candidateModel = ConstructedModelTracker.getModel(
|
||||
ConstructedModelTracker
|
||||
.generateModelIdentifier(
|
||||
uri,
|
||||
PersonToPublicationsModelConstructor.MODEL_TYPE));
|
||||
|
||||
if (candidateModel != null) {
|
||||
|
||||
return candidateModel;
|
||||
|
||||
} else {
|
||||
|
||||
ModelConstructor model = new PersonToPublicationsModelConstructor(uri, dataset);
|
||||
|
||||
Model constructedModel = model.getConstructedModel();
|
||||
ConstructedModelTracker.trackModel(
|
||||
ConstructedModelTracker
|
||||
.generateModelIdentifier(
|
||||
uri,
|
||||
PersonToPublicationsModelConstructor.MODEL_TYPE),
|
||||
constructedModel);
|
||||
|
||||
return constructedModel;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,33 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects;
|
||||
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
|
||||
public class ConstructedModelTracker {
|
||||
|
||||
private static Map<String, Model> modelIdentifierToConstructedModel = new HashMap<String, Model>();
|
||||
|
||||
public static void trackModel(String identifier, Model model) {
|
||||
modelIdentifierToConstructedModel.put(identifier, model);
|
||||
}
|
||||
|
||||
public static Model getModel(String identifier) {
|
||||
return modelIdentifierToConstructedModel.get(identifier);
|
||||
}
|
||||
|
||||
public static String generateModelIdentifier(String uri, String modelType) {
|
||||
|
||||
if (uri == null) {
|
||||
uri = "";
|
||||
}
|
||||
return modelType + "$" + uri;
|
||||
}
|
||||
|
||||
public static Map<String, Model> getAllModels() {
|
||||
return modelIdentifierToConstructedModel;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -2,36 +2,29 @@
|
|||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects;
|
||||
|
||||
import java.util.Collection;
|
||||
import java.util.HashSet;
|
||||
import java.util.Set;
|
||||
import java.util.LinkedHashSet;
|
||||
import java.util.Set;
|
||||
|
||||
/**
|
||||
* @author bkoniden
|
||||
* Deepak Konidena
|
||||
*
|
||||
* original @author bkoniden (Deepak Konidena)
|
||||
* modified by @author cdtank (Chintan Tank)
|
||||
*/
|
||||
public class Entity extends Individual {
|
||||
|
||||
private Set<Activity> activities = new HashSet<Activity>();
|
||||
private Set<SubEntity> children = new LinkedHashSet<SubEntity>();
|
||||
|
||||
public Entity(String departmentURI, String departmentLabel) {
|
||||
super(departmentURI, departmentLabel);
|
||||
public Entity(String entityURI, String entityLabel) {
|
||||
super(entityURI, entityLabel);
|
||||
}
|
||||
|
||||
public void setDepartmentLabel(String departmentURI) {
|
||||
this.setIndividualLabel(departmentURI);
|
||||
public Entity(String entityURI) {
|
||||
super(entityURI);
|
||||
}
|
||||
|
||||
public String getEntityURI() {
|
||||
return this.getIndividualURI();
|
||||
}
|
||||
|
||||
public Set<Activity> getActivities() {
|
||||
return activities;
|
||||
}
|
||||
|
||||
public String getEntityLabel() {
|
||||
return this.getIndividualLabel();
|
||||
}
|
||||
|
|
@ -40,18 +33,12 @@ public class Entity extends Individual {
|
|||
return children;
|
||||
}
|
||||
|
||||
public void addActivity(Activity activity) {
|
||||
this.activities.add(activity);
|
||||
}
|
||||
|
||||
public void addSubEntity(SubEntity subEntity) {
|
||||
this.children.add(subEntity);
|
||||
|
||||
}
|
||||
|
||||
public void addSubEntitities(Collection<SubEntity> subEntities) {
|
||||
this.children.addAll(subEntities);
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -2,7 +2,10 @@
|
|||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.Collection;
|
||||
import java.util.Collections;
|
||||
import java.util.List;
|
||||
import java.util.Set;
|
||||
|
||||
/**
|
||||
* JsonObject is used for creating data in JSON format,
|
||||
|
|
@ -27,13 +30,19 @@ public class JsonObject {
|
|||
this.stopWords = stopWords;
|
||||
}
|
||||
|
||||
public List<String> getOrganizationType() {
|
||||
public List<String> getOrganizationTypes() {
|
||||
return organizationType;
|
||||
}
|
||||
|
||||
public void setOrganizationType(List<String> organizationType) {
|
||||
public void setOrganizationTypes(List<String> organizationType) {
|
||||
this.organizationType = organizationType;
|
||||
}
|
||||
|
||||
public void setOrganizationTypes(Set<String> givenOrganizationType) {
|
||||
for (String type : givenOrganizationType) {
|
||||
this.organizationType.add(type);
|
||||
}
|
||||
}
|
||||
|
||||
public String getEntityURI() {
|
||||
return entityURI;
|
||||
|
|
|
|||
|
|
@ -1,10 +1,9 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects;
|
||||
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.Collection;
|
||||
import java.util.HashSet;
|
||||
import java.util.Set;
|
||||
|
||||
/**
|
||||
* @author bkoniden
|
||||
|
|
@ -13,26 +12,12 @@ import java.util.HashSet;
|
|||
public class SubEntity extends Individual {
|
||||
|
||||
private Set<Activity> activities = new HashSet<Activity>();
|
||||
private Map<String, Map<String, String>> personToPositionAndStartYear =
|
||||
new HashMap<String, Map<String, String>>();
|
||||
private Set<String> entityTypes = new HashSet<String>();
|
||||
|
||||
public SubEntity(String individualURI) {
|
||||
super(individualURI);
|
||||
}
|
||||
|
||||
public Map<String, Map<String, String>> getPersonToPositionAndStartYear() {
|
||||
return personToPositionAndStartYear;
|
||||
}
|
||||
|
||||
public void setPersonToPositionAndStartYear(
|
||||
Map<String, Map<String, String>> personToPositionAndStartYear) {
|
||||
this.personToPositionAndStartYear = personToPositionAndStartYear;
|
||||
}
|
||||
|
||||
public Set<Activity> getActivities() {
|
||||
return activities;
|
||||
}
|
||||
|
||||
public SubEntity(String individualURI, String individualLabel) {
|
||||
super(individualURI, individualLabel);
|
||||
}
|
||||
|
|
@ -45,5 +30,21 @@ public class SubEntity extends Individual {
|
|||
public void addActivity(Activity activity) {
|
||||
this.activities.add(activity);
|
||||
}
|
||||
|
||||
public void addActivities(Collection<Activity> activities) {
|
||||
this.activities.addAll(activities);
|
||||
}
|
||||
|
||||
public Set<Activity> getActivities() {
|
||||
return activities;
|
||||
}
|
||||
|
||||
public void addEntityTypeLabel(String typeLabel) {
|
||||
this.entityTypes.add(typeLabel);
|
||||
}
|
||||
|
||||
public Set<String> getEntityTypeLabels() {
|
||||
return entityTypes;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,15 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils;
|
||||
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
|
||||
public interface CachedModelConstructor {
|
||||
|
||||
Model getConstructedModel() throws MalformedQueryParametersException;
|
||||
|
||||
String getModelType();
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,97 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils;
|
||||
|
||||
import java.util.Map;
|
||||
|
||||
import com.hp.hpl.jena.query.Query;
|
||||
import com.hp.hpl.jena.query.QueryExecution;
|
||||
import com.hp.hpl.jena.query.QueryExecutionFactory;
|
||||
import com.hp.hpl.jena.query.QueryFactory;
|
||||
import com.hp.hpl.jena.query.ResultSet;
|
||||
import com.hp.hpl.jena.query.Syntax;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryConstants;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
|
||||
|
||||
|
||||
/**
|
||||
* This query runner is used to run a generic sparql query based on the "select",
|
||||
* "where" & "filter" rules provided to it.
|
||||
*
|
||||
* @author cdtank
|
||||
*/
|
||||
public class GenericQueryRunnerOnModel implements QueryRunner<ResultSet> {
|
||||
|
||||
protected static final Syntax SYNTAX = Syntax.syntaxARQ;
|
||||
|
||||
private String whereClause;
|
||||
private Model model;
|
||||
|
||||
private Map<String, String> fieldLabelToOutputFieldLabel;
|
||||
|
||||
private String groupOrderClause;
|
||||
|
||||
private String aggregationRules;
|
||||
|
||||
public GenericQueryRunnerOnModel(Map<String, String> fieldLabelToOutputFieldLabel,
|
||||
String aggregationRules,
|
||||
String whereClause,
|
||||
String groupOrderClause,
|
||||
Model model) {
|
||||
|
||||
this.fieldLabelToOutputFieldLabel = fieldLabelToOutputFieldLabel;
|
||||
this.aggregationRules = aggregationRules;
|
||||
this.whereClause = whereClause;
|
||||
this.groupOrderClause = groupOrderClause;
|
||||
this.model = model;
|
||||
}
|
||||
|
||||
private ResultSet executeQuery(String queryText,
|
||||
Model dataset) {
|
||||
|
||||
QueryExecution queryExecution = null;
|
||||
Query query = QueryFactory.create(queryText, SYNTAX);
|
||||
queryExecution = QueryExecutionFactory.create(query, dataset);
|
||||
return queryExecution.execSelect();
|
||||
}
|
||||
|
||||
private String generateGenericSparqlQuery() {
|
||||
|
||||
StringBuilder sparqlQuery = new StringBuilder();
|
||||
sparqlQuery.append(QueryConstants.getSparqlPrefixQuery());
|
||||
|
||||
sparqlQuery.append("SELECT\n");
|
||||
|
||||
for (Map.Entry<String, String> currentfieldLabelToOutputFieldLabel
|
||||
: this.fieldLabelToOutputFieldLabel.entrySet()) {
|
||||
|
||||
sparqlQuery.append("\t(str(?" + currentfieldLabelToOutputFieldLabel.getKey() + ") as ?"
|
||||
+ currentfieldLabelToOutputFieldLabel.getValue() + ")\n");
|
||||
|
||||
}
|
||||
|
||||
sparqlQuery.append("\n" + this.aggregationRules + "\n");
|
||||
|
||||
sparqlQuery.append("WHERE {\n");
|
||||
|
||||
sparqlQuery.append(this.whereClause);
|
||||
|
||||
sparqlQuery.append("}\n");
|
||||
|
||||
sparqlQuery.append(this.groupOrderClause);
|
||||
|
||||
return sparqlQuery.toString();
|
||||
}
|
||||
|
||||
public ResultSet getQueryResult()
|
||||
throws MalformedQueryParametersException {
|
||||
|
||||
ResultSet resultSet = executeQuery(generateGenericSparqlQuery(),
|
||||
this.model);
|
||||
|
||||
return resultSet;
|
||||
}
|
||||
}
|
||||
Loading…
Add table
Reference in a new issue