diff --git a/rdf/tbox/filegraph/agent.owl b/rdf/tbox/filegraph/agent.owl
index ee0868ad..a8f938d4 100644
--- a/rdf/tbox/filegraph/agent.owl
+++ b/rdf/tbox/filegraph/agent.owl
@@ -7,7 +7,6 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:skos="http://www.w3.org/2004/02/skos/core#">
-
diff --git a/rdf/tbox/filegraph/bfo-bridge.owl b/rdf/tbox/filegraph/bfo-bridge.owl
index d3f42a1a..04732b54 100644
--- a/rdf/tbox/filegraph/bfo-bridge.owl
+++ b/rdf/tbox/filegraph/bfo-bridge.owl
@@ -5,7 +5,6 @@
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
-
diff --git a/rdf/tbox/filegraph/classes-additional.owl b/rdf/tbox/filegraph/classes-additional.owl
index b5388cad..ee0b1f7c 100644
--- a/rdf/tbox/filegraph/classes-additional.owl
+++ b/rdf/tbox/filegraph/classes-additional.owl
@@ -12,10 +12,6 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:core="http://vivoweb.org/ontology/core#">
-
- ${eaglei.ontology.version}
- A file to hold VIVO application specific entities, and original VIVO entities that are being considered to be application specific when merging into ARG.
-
diff --git a/rdf/tbox/filegraph/object-properties3.owl b/rdf/tbox/filegraph/object-properties3.owl
index d0870a7d..be14f490 100644
--- a/rdf/tbox/filegraph/object-properties3.owl
+++ b/rdf/tbox/filegraph/object-properties3.owl
@@ -12,10 +12,6 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:core="http://vivoweb.org/ontology/core#">
-
- ${eaglei.ontology.version}
- A file to hold VIVO application specific entities, and original VIVO entities that are being considered to be application specific when merging into ARG.
-
diff --git a/rdf/tbox/filegraph/ontologies.owl b/rdf/tbox/filegraph/ontologies.owl
new file mode 100644
index 00000000..342186e2
--- /dev/null
+++ b/rdf/tbox/filegraph/ontologies.owl
@@ -0,0 +1,16 @@
+
+
+
+
+
+
+
+
+
+
diff --git a/rdf/tbox/filegraph/other.owl b/rdf/tbox/filegraph/other.owl
index 576c1b38..7247dfcd 100644
--- a/rdf/tbox/filegraph/other.owl
+++ b/rdf/tbox/filegraph/other.owl
@@ -6,7 +6,6 @@
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
-
diff --git a/rdf/tbox/filegraph/outreach.owl b/rdf/tbox/filegraph/outreach.owl
index e0398e44..677c5a8e 100644
--- a/rdf/tbox/filegraph/outreach.owl
+++ b/rdf/tbox/filegraph/outreach.owl
@@ -6,7 +6,6 @@
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
-
diff --git a/rdf/tbox/filegraph/process.owl b/rdf/tbox/filegraph/process.owl
index 56a049ad..50cb2d93 100644
--- a/rdf/tbox/filegraph/process.owl
+++ b/rdf/tbox/filegraph/process.owl
@@ -6,7 +6,6 @@
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
-
diff --git a/rdf/tbox/filegraph/publication.owl b/rdf/tbox/filegraph/publication.owl
index 48fe902e..7c43ab8f 100644
--- a/rdf/tbox/filegraph/publication.owl
+++ b/rdf/tbox/filegraph/publication.owl
@@ -9,7 +9,6 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:core="http://vivoweb.org/ontology/core#">
-
diff --git a/rdf/tbox/filegraph/relationship.owl b/rdf/tbox/filegraph/relationship.owl
index 336ede56..4d71b04a 100644
--- a/rdf/tbox/filegraph/relationship.owl
+++ b/rdf/tbox/filegraph/relationship.owl
@@ -6,7 +6,6 @@
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
-
diff --git a/rdf/tbox/filegraph/research-resource-iao.owl b/rdf/tbox/filegraph/research-resource-iao.owl
index 2b748398..f2e0dd49 100644
--- a/rdf/tbox/filegraph/research-resource-iao.owl
+++ b/rdf/tbox/filegraph/research-resource-iao.owl
@@ -6,7 +6,6 @@
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
-
diff --git a/rdf/tbox/filegraph/research-resource.owl b/rdf/tbox/filegraph/research-resource.owl
index 796fdf84..5c65f646 100644
--- a/rdf/tbox/filegraph/research-resource.owl
+++ b/rdf/tbox/filegraph/research-resource.owl
@@ -6,7 +6,6 @@
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
-
diff --git a/rdf/tbox/filegraph/research.owl b/rdf/tbox/filegraph/research.owl
index 3d70f4b3..94f10ae3 100644
--- a/rdf/tbox/filegraph/research.owl
+++ b/rdf/tbox/filegraph/research.owl
@@ -7,7 +7,6 @@
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
-
diff --git a/rdf/tbox/filegraph/role.owl b/rdf/tbox/filegraph/role.owl
index e1eb21b0..4c6bc827 100644
--- a/rdf/tbox/filegraph/role.owl
+++ b/rdf/tbox/filegraph/role.owl
@@ -6,7 +6,6 @@
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
-
diff --git a/rdf/tbox/filegraph/service.owl b/rdf/tbox/filegraph/service.owl
index 9d88862d..2358cee7 100644
--- a/rdf/tbox/filegraph/service.owl
+++ b/rdf/tbox/filegraph/service.owl
@@ -5,7 +5,6 @@
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
-
diff --git a/rdf/tbox/filegraph/skos-vivo.owl b/rdf/tbox/filegraph/skos-vivo.owl
index 8d3d1b3e..cc614d32 100644
--- a/rdf/tbox/filegraph/skos-vivo.owl
+++ b/rdf/tbox/filegraph/skos-vivo.owl
@@ -7,10 +7,12 @@
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+
+