NIHVIVO-3523 catch up with the trunk

2012-01-09 15:50:14 +00:00 · 2012-01-09 15:50:14 +00:00 · bb220015d7
commit bb220015d7
parent 1a54405cf1 225a254b71
16 changed files with 2717 additions and 2051 deletions
--- a/productMods/WEB-INF/filegraph/tbox/isDefinedBy-1.5.owl
+++ b/productMods/WEB-INF/filegraph/tbox/isDefinedBy-1.5.owl
--- a/productMods/WEB-INF/filegraph/tbox/scires-1.5.owl
+++ b/productMods/WEB-INF/filegraph/tbox/scires-1.5.owl
@ -1,16 +1,25 @@
 <rdf:RDF
+    xmlns:vitro-public="http://vitro.mannlib.cornell.edu/ns/vitro/public#"
    xmlns:geo="http://aims.fao.org/aos/geopolitical.owl#"
+    xmlns:skos="http://www.w3.org/2004/02/skos/core#"
+    xmlns:ero="http://purl.obolibrary.org/obo/"
+    xmlns:event="http://purl.org/NET/c4dm/event.owl#"
+    xmlns:pvs="http://vivoweb.org/ontology/provenance-support#"
    xmlns:dcelem="http://purl.org/dc/elements/1.1/"
    xmlns:j.0="http://www.w3.org/2006/12/owl2-xml#"
    xmlns:scirr="http://vivoweb.org/ontology/scientific-research-resource#"
+    xmlns:vivo="http://vivoweb.org/ontology/core#"
    xmlns:j.1="http://purl.org/vocab/vann/"
    xmlns:vitro="http://vitro.mannlib.cornell.edu/ns/vitro/0.7#"
    xmlns:j.2="http://www.w3.org/2008/05/skos#"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:afn="http://jena.hpl.hp.com/ARQ/function#"
+    xmlns:bibo="http://purl.org/ontology/bibo/"
+    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:j.3="http://www.w3.org/2003/06/sw-vocab-status/ns#"
    xmlns:owl="http://www.w3.org/2002/07/owl#"
    xmlns:dcterms="http://purl.org/dc/terms/"
+    xmlns:scires="http://vivoweb.org/ontology/scientific-research#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
    xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" > 
  <rdf:Description rdf:about="http://purl.obolibrary.org/obo/">
@ -27,11 +36,6 @@
    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/>
    <vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">number of human participants in the study (trial).</vitro:descriptionAnnot>
  </rdf:Description>
-  <rdf:Description rdf:nodeID="A0">
-    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Restriction"/>
-    <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ERO_0000460"/>
-    <owl:allValuesFrom rdf:resource="http://purl.org/ontology/bibo/Document"/>
-  </rdf:Description>
  <rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000272">
    <rdfs:subClassOf rdf:resource="http://purl.org/ontology/bibo/Document"/>
    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
@ -43,6 +47,11 @@
    <rdfs:domain rdf:resource="http://purl.org/ontology/bibo/Document"/>
    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
  </rdf:Description>
+  <rdf:Description rdf:nodeID="A0">
+    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Restriction"/>
+    <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ERO_0000460"/>
+    <owl:allValuesFrom rdf:resource="http://purl.org/ontology/bibo/Document"/>
+  </rdf:Description>
  <rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Phase4ClinicalTrial">
    <vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 4 Clinical Trial</vitro:shortDef>
    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
@ -130,14 +139,14 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a
  </rdf:Description>
  <rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Phase3ClinicalTrial">
    <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000016"/>
+    <vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In Phase 3 trials, an experimental study drug or treatment is given to large groups of people (1,000-3,000) to confirm its effectiveness, monitor side effects, compare it to commonly used treatments, and collect information that will allow the experimental drug or treatment to be used safely.
+</vitro:descriptionAnnot>
    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
    <vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 3 Clinical Trial</vitro:shortDef>
-    <vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In Phase 3 trials, an experimental study drug or treatment is given to large groups of people (1,000-3,000) to confirm its effectiveness, monitor side effects, compare it to commonly used treatments, and collect information that will allow the experimental drug or treatment to be used safely.
-</vitro:descriptionAnnot>
  </rdf:Description>
  <rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000004">
-    <rdfs:subClassOf rdf:nodeID="A0"/>
    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
+    <rdfs:subClassOf rdf:nodeID="A0"/>
    <vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:descriptionAnnot>
    <vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:shortDef>
    <rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Equipment"/>
--- a/productMods/WEB-INF/filegraph/tbox/vivo-core-1.5.owl
+++ b/productMods/WEB-INF/filegraph/tbox/vivo-core-1.5.owl
--- a/productMods/WEB-INF/ontologies/public/scires-public-1.5.owl
+++ b/productMods/WEB-INF/ontologies/public/scires-public-1.5.owl
@ -1,16 +1,25 @@
 <rdf:RDF
+    xmlns:vitro-public="http://vitro.mannlib.cornell.edu/ns/vitro/public#"
    xmlns:geo="http://aims.fao.org/aos/geopolitical.owl#"
+    xmlns:skos="http://www.w3.org/2004/02/skos/core#"
+    xmlns:ero="http://purl.obolibrary.org/obo/"
+    xmlns:event="http://purl.org/NET/c4dm/event.owl#"
+    xmlns:pvs="http://vivoweb.org/ontology/provenance-support#"
    xmlns:dcelem="http://purl.org/dc/elements/1.1/"
    xmlns:j.0="http://www.w3.org/2006/12/owl2-xml#"
    xmlns:scirr="http://vivoweb.org/ontology/scientific-research-resource#"
+    xmlns:vivo="http://vivoweb.org/ontology/core#"
    xmlns:j.1="http://purl.org/vocab/vann/"
    xmlns:vitro="http://vitro.mannlib.cornell.edu/ns/vitro/0.7#"
    xmlns:j.2="http://www.w3.org/2008/05/skos#"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:afn="http://jena.hpl.hp.com/ARQ/function#"
+    xmlns:bibo="http://purl.org/ontology/bibo/"
+    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:j.3="http://www.w3.org/2003/06/sw-vocab-status/ns#"
    xmlns:owl="http://www.w3.org/2002/07/owl#"
    xmlns:dcterms="http://purl.org/dc/terms/"
+    xmlns:scires="http://vivoweb.org/ontology/scientific-research#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
    xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" > 
  <rdf:Description rdf:about="http://purl.obolibrary.org/obo/">
@ -30,11 +39,6 @@
    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/>
    <vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">number of human participants in the study (trial).</vitro:descriptionAnnot>
  </rdf:Description>
-  <rdf:Description rdf:nodeID="A0">
-    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Restriction"/>
-    <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ERO_0000460"/>
-    <owl:allValuesFrom rdf:resource="http://purl.org/ontology/bibo/Document"/>
-  </rdf:Description>
  <rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000272">
    <rdfs:subClassOf rdf:resource="http://purl.org/ontology/bibo/Document"/>
    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
@ -48,6 +52,11 @@
    <rdfs:domain rdf:resource="http://purl.org/ontology/bibo/Document"/>
    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
  </rdf:Description>
+  <rdf:Description rdf:nodeID="A0">
+    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Restriction"/>
+    <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ERO_0000460"/>
+    <owl:allValuesFrom rdf:resource="http://purl.org/ontology/bibo/Document"/>
+  </rdf:Description>
  <rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Phase4ClinicalTrial">
    <vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 4 Clinical Trial</vitro:shortDef>
    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
@ -150,15 +159,15 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a
  </rdf:Description>
  <rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Phase3ClinicalTrial">
    <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000016"/>
+    <vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In Phase 3 trials, an experimental study drug or treatment is given to large groups of people (1,000-3,000) to confirm its effectiveness, monitor side effects, compare it to commonly used treatments, and collect information that will allow the experimental drug or treatment to be used safely.
+</vitro:descriptionAnnot>
    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
    <rdfs:label xml:lang="en-US">Phase 3 Clinical Trial</rdfs:label>
    <vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 3 Clinical Trial</vitro:shortDef>
-    <vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In Phase 3 trials, an experimental study drug or treatment is given to large groups of people (1,000-3,000) to confirm its effectiveness, monitor side effects, compare it to commonly used treatments, and collect information that will allow the experimental drug or treatment to be used safely.
-</vitro:descriptionAnnot>
  </rdf:Description>
  <rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000004">
-    <rdfs:subClassOf rdf:nodeID="A0"/>
    <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
+    <rdfs:subClassOf rdf:nodeID="A0"/>
    <rdfs:label xml:lang="en-US">Instrument</rdfs:label>
    <vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:descriptionAnnot>
    <vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:shortDef>
--- a/productMods/WEB-INF/ontologies/public/vivo-core-public-1.5.owl
+++ b/productMods/WEB-INF/ontologies/public/vivo-core-public-1.5.owl
--- a/productMods/WEB-INF/ontologies/user/tbox/geopolitical-ver1.1-11-18-11-annotations.rdf
+++ b/productMods/WEB-INF/ontologies/user/tbox/geopolitical-ver1.1-11-18-11-annotations.rdf
@ -1,15 +1,24 @@
 <rdf:RDF
+    xmlns:vitro-public="http://vitro.mannlib.cornell.edu/ns/vitro/public#"
    xmlns:geo="http://aims.fao.org/aos/geopolitical.owl#"
+    xmlns:skos="http://www.w3.org/2004/02/skos/core#"
+    xmlns:ero="http://purl.obolibrary.org/obo/"
+    xmlns:event="http://purl.org/NET/c4dm/event.owl#"
+    xmlns:pvs="http://vivoweb.org/ontology/provenance-support#"
    xmlns:dcelem="http://purl.org/dc/elements/1.1/"
    xmlns:j.0="http://www.w3.org/2006/12/owl2-xml#"
+    xmlns:vivo="http://vivoweb.org/ontology/core#"
    xmlns:j.1="http://purl.org/vocab/vann/"
    xmlns:vitro="http://vitro.mannlib.cornell.edu/ns/vitro/0.7#"
-    xmlns:j.2="http://www.w3.org/2008/05/skos#"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+    xmlns:j.2="http://www.w3.org/2008/05/skos#"
    xmlns:afn="http://jena.hpl.hp.com/ARQ/function#"
+    xmlns:bibo="http://purl.org/ontology/bibo/"
+    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:j.3="http://www.w3.org/2003/06/sw-vocab-status/ns#"
    xmlns:owl="http://www.w3.org/2002/07/owl#"
    xmlns:dcterms="http://purl.org/dc/terms/"
+    xmlns:scires="http://vivoweb.org/ontology/scientific-research#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
    xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" > 
  <rdf:Description rdf:about="http://aims.fao.org/aos/geopolitical.owl#hasCoordinate">
--- a/productMods/WEB-INF/ontologies/user/tbox/isDefinedBy-1.5-annotations.rdf
+++ b/productMods/WEB-INF/ontologies/user/tbox/isDefinedBy-1.5-annotations.rdf
--- a/productMods/WEB-INF/ontologies/user/tbox/scires-1.5-annotations.rdf
+++ b/productMods/WEB-INF/ontologies/user/tbox/scires-1.5-annotations.rdf
@ -1,15 +1,24 @@
 <rdf:RDF
+    xmlns:vitro-public="http://vitro.mannlib.cornell.edu/ns/vitro/public#"
    xmlns:geo="http://aims.fao.org/aos/geopolitical.owl#"
+    xmlns:skos="http://www.w3.org/2004/02/skos/core#"
+    xmlns:ero="http://purl.obolibrary.org/obo/"
+    xmlns:event="http://purl.org/NET/c4dm/event.owl#"
+    xmlns:pvs="http://vivoweb.org/ontology/provenance-support#"
    xmlns:dcelem="http://purl.org/dc/elements/1.1/"
    xmlns:j.0="http://www.w3.org/2006/12/owl2-xml#"
+    xmlns:vivo="http://vivoweb.org/ontology/core#"
    xmlns:j.1="http://purl.org/vocab/vann/"
    xmlns:vitro="http://vitro.mannlib.cornell.edu/ns/vitro/0.7#"
-    xmlns:j.2="http://www.w3.org/2008/05/skos#"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+    xmlns:j.2="http://www.w3.org/2008/05/skos#"
    xmlns:afn="http://jena.hpl.hp.com/ARQ/function#"
+    xmlns:bibo="http://purl.org/ontology/bibo/"
+    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:j.3="http://www.w3.org/2003/06/sw-vocab-status/ns#"
    xmlns:owl="http://www.w3.org/2002/07/owl#"
    xmlns:dcterms="http://purl.org/dc/terms/"
+    xmlns:scires="http://vivoweb.org/ontology/scientific-research#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
    xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" > 
  <rdf:Description rdf:about="http://purl.obolibrary.org/obo/">
--- a/productMods/WEB-INF/ontologies/user/tbox/vivo-core-1.5-annotations.rdf
+++ b/productMods/WEB-INF/ontologies/user/tbox/vivo-core-1.5-annotations.rdf
@ -1,15 +1,24 @@
 <rdf:RDF
+    xmlns:vitro-public="http://vitro.mannlib.cornell.edu/ns/vitro/public#"
    xmlns:geo="http://aims.fao.org/aos/geopolitical.owl#"
+    xmlns:skos="http://www.w3.org/2004/02/skos/core#"
+    xmlns:ero="http://purl.obolibrary.org/obo/"
+    xmlns:event="http://purl.org/NET/c4dm/event.owl#"
+    xmlns:pvs="http://vivoweb.org/ontology/provenance-support#"
    xmlns:dcelem="http://purl.org/dc/elements/1.1/"
    xmlns:j.0="http://www.w3.org/2006/12/owl2-xml#"
+    xmlns:vivo="http://vivoweb.org/ontology/core#"
    xmlns:j.1="http://purl.org/vocab/vann/"
    xmlns:vitro="http://vitro.mannlib.cornell.edu/ns/vitro/0.7#"
-    xmlns:j.2="http://www.w3.org/2008/05/skos#"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+    xmlns:j.2="http://www.w3.org/2008/05/skos#"
    xmlns:afn="http://jena.hpl.hp.com/ARQ/function#"
+    xmlns:bibo="http://purl.org/ontology/bibo/"
+    xmlns:foaf="http://xmlns.com/foaf/0.1/"
    xmlns:j.3="http://www.w3.org/2003/06/sw-vocab-status/ns#"
    xmlns:owl="http://www.w3.org/2002/07/owl#"
    xmlns:dcterms="http://purl.org/dc/terms/"
+    xmlns:scires="http://vivoweb.org/ontology/scientific-research#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
    xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" > 
  <rdf:Description rdf:about="http://vivoweb.org/ontology/core#pmcid">
@ -828,6 +837,13 @@
    <vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
    <vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
  </rdf:Description>
+  <rdf:Description rdf:about="http://vitro.mannlib.cornell.edu/ns/vitro/0.7#moniker">
+    <vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#editor"/>
+    <vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#editor"/>
+    <vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">3</vitro:displayLimitAnnot>
+    <vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">100</vitro:displayRankAnnot>
+    <rdfs:label xml:lang="en-US">moniker (deprecated)</rdfs:label>
+  </rdf:Description>
  <rdf:Description rdf:about="http://vivoweb.org/ontology/core#Address">
    <vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
    <vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
@ -886,8 +902,6 @@
 </vitro:publicDescriptionAnnot>
    <vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
    <vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
-    <vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This relates a geographic location to something within that geographic location, for example, an organization within that geographic location.
-</vitro:publicDescriptionAnnot>
    <rdfs:label xml:lang="en-US">geographic location of</rdfs:label>
    <vitro:fullPropertyNameAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nearestGeographicLocationFor</vitro:fullPropertyNameAnnot>
  </rdf:Description>
@ -979,11 +993,9 @@
    <rdfs:label xml:lang="en-US">contributes to</rdfs:label>
  </rdf:Description>
  <rdf:Description rdf:about="http://vitro.mannlib.cornell.edu/ns/vitro/0.7#additionalLink">
-    <rdfs:label xml:lang="en-US">Additional Link</rdfs:label>
-    <vitro:stubObjectPropertyAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:stubObjectPropertyAnnot>
+    <vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">false</vitro:selectFromExistingAnnot>
    <vitro:customEntryFormAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">defaultLinkForm.jsp</vitro:customEntryFormAnnot>
    <vitro:offerCreateNewOptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:offerCreateNewOptionAnnot>
-    <vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">false</vitro:selectFromExistingAnnot>
  </rdf:Description>
  <rdf:Description rdf:about="http://purl.org/ontology/bibo/pmid">
    <vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">10</vitro:displayRankAnnot>
@ -1232,14 +1244,6 @@
    <vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
    <vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
  </rdf:Description>
-  <rdf:Description rdf:about="http://vivoweb.org/ontology/core#Certification">
-    <vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">2</vitro:displayRankAnnot>
-    <vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
-    <rdfs:label xml:lang="en-US">Certification</rdfs:label>
-    <vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">2</vitro:displayLimitAnnot>
-    <vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGroupactivities"/>
-    <vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
-  </rdf:Description>
  <rdf:Description rdf:about="http://vivoweb.org/ontology/core#featuredIn">
    <rdfs:label xml:lang="en-US">featured in</rdfs:label>
    <vitro:offerCreateNewOptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:offerCreateNewOptionAnnot>
@ -1252,6 +1256,14 @@
    <vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
    <vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">50</vitro:displayRankAnnot>
  </rdf:Description>
+  <rdf:Description rdf:about="http://vivoweb.org/ontology/core#Certification">
+    <vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">2</vitro:displayRankAnnot>
+    <vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
+    <rdfs:label xml:lang="en-US">Certification</rdfs:label>
+    <vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">2</vitro:displayLimitAnnot>
+    <vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGroupactivities"/>
+    <vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
+  </rdf:Description>
  <rdf:Description rdf:about="http://purl.org/ontology/bibo/BookSection">
    <vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
    <vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
@ -1850,13 +1862,13 @@
  </rdf:Description>
  <rdf:Description rdf:about="http://vivoweb.org/ontology/core#iclCode">
    <rdfs:label xml:lang="en-US">International Classification (ICL) code</rdfs:label>
+    <vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The International classification(s) to which the published application has been assigned.
+</vitro:publicDescriptionAnnot>
    <vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">1</vitro:displayLimitAnnot>
    <vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">5</vitro:displayRankAnnot>
    <vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
    <vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
    <vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupbibobscure"/>
-    <vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The International classification(s) to which the published application has been assigned.
-</vitro:publicDescriptionAnnot>
  </rdf:Description>
  <rdf:Description rdf:about="http://purl.org/ontology/bibo/presentedAt">
    <vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
@ -2077,8 +2089,9 @@
    <vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
  </rdf:Description>
  <rdf:Description rdf:about="http://vitro.mannlib.cornell.edu/ns/vitro/public">
-    <rdfs:label>Vitro Public Ontology</rdfs:label>
+    <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Vitro public constructs</rdfs:label>
    <vitro:ontologyPrefixAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">vitro-public</vitro:ontologyPrefixAnnot>
+    <rdfs:label>Vitro Public Ontology</rdfs:label>
    <rdfs:label xml:lang="en-US">Vitro Public Ontology</rdfs:label>
  </rdf:Description>
  <rdf:Description rdf:about="http://purl.org/ontology/bibo/isbn10">
@ -2700,11 +2713,9 @@
    <vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
  </rdf:Description>
  <rdf:Description rdf:about="http://vitro.mannlib.cornell.edu/ns/vitro/0.7#primaryLink">
-    <rdfs:label xml:lang="en-US">Primary Link</rdfs:label>
-    <vitro:stubObjectPropertyAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:stubObjectPropertyAnnot>
+    <vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">false</vitro:selectFromExistingAnnot>
    <vitro:customEntryFormAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">defaultLinkForm.jsp</vitro:customEntryFormAnnot>
    <vitro:offerCreateNewOptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:offerCreateNewOptionAnnot>
-    <vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">false</vitro:selectFromExistingAnnot>
  </rdf:Description>
  <rdf:Description rdf:about="http://vivoweb.org/ontology/core#PresenterRole">
    <vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
@ -3554,8 +3565,8 @@
    <vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupaffiliation"/>
  </rdf:Description>
  <rdf:Description rdf:about="http://vivoweb.org/ontology/core#PrivateCompany">
-    <vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGrouporganizations"/>
    <rdfs:label xml:lang="en-US">Private Company</rdfs:label>
+    <vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGrouporganizations"/>
    <vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
    <vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
    <vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
@ -3655,6 +3666,13 @@
    <vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGrouplocations"/>
    <vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
  </rdf:Description>
+  <rdf:Description rdf:about="http://www.w3.org/2000/01/rdf-schema#isDefinedBy">
+    <vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
+    <vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
+    <vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupoverview"/>
+    <vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
+    <rdfs:label xml:lang="en-US">is defined by</rdfs:label>
+  </rdf:Description>
  <rdf:Description rdf:about="http://purl.org/ontology/bibo/pageEnd">
    <vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
    <vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
@ -3902,8 +3920,6 @@
    <vitro:offerCreateNewOptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:offerCreateNewOptionAnnot>
    <vitro:fullPropertyNameAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nearestGeographicLocation</vitro:fullPropertyNameAnnot>
    <vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This relates something to its geographic location, for example, an organization to its geographic location. 
-</vitro:publicDescriptionAnnot>
-    <vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This relates something to its geographic location, for example, an organization to its geographic location. 
 </vitro:publicDescriptionAnnot>
  </rdf:Description>
  <rdf:Description rdf:about="http://vivoweb.org/ontology/core#dateFiled">
--- a/productMods/WEB-INF/resources/startup_listeners.txt
+++ b/productMods/WEB-INF/resources/startup_listeners.txt
@ -27,7 +27,7 @@ edu.cornell.mannlib.vitro.webapp.servlet.setup.UpdatePermissionSetUris

 # Invokes process to perform updates to align with ontology changes if needed -->
 # Needs to run before submodels are attached and Pellet is set up -->
-edu.cornell.mannlib.vitro.webapp.servlet.setup.UpdateKnowledgeBase
+#edu.cornell.mannlib.vitro.webapp.servlet.setup.UpdateKnowledgeBase

 edu.cornell.mannlib.vitro.webapp.servlet.setup.FileGraphSetup