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ontology updates for NIHVIVO-2543 and VIVOONT-342

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stellamit 2011-04-26 13:44:22 +00:00
parent 09701471a3
commit c081827941
5 changed files with 2537 additions and 2518 deletions
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12
productMods/WEB-INF/filegraph/tbox/scires-1.2.owl
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@ -106,11 +106,6 @@ NOTE: For now we are not addressing whether this is a subclass of foaf:Agent</vi
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 1 Clinical Trial</vitro:shortDef>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000016"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A0">
<owl:allValuesFrom rdf:resource="http://purl.org/ontology/bibo/Document"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Restriction"/>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ERO_0000460"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026">
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism is a material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment.</vitro:shortDef>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI: An organism is material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.
@ -135,10 +130,15 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In Phase 3 trials, an experimental study drug or treatment is given to large groups of people (1,000-3,000) to confirm its effectiveness, monitor side effects, compare it to commonly used treatments, and collect information that will allow the experimental drug or treatment to be used safely.
</vitro:descriptionAnnot>
</rdf:Description>
<rdf:Description rdf:nodeID="A0">
<owl:allValuesFrom rdf:resource="http://purl.org/ontology/bibo/Document"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Restriction"/>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ERO_0000460"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000004">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
<rdfs:subClassOf rdf:nodeID="A0"/>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:descriptionAnnot>
<rdfs:subClassOf rdf:nodeID="A0"/>
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Equipment"/>
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:shortDef>
</rdf:Description>

2500
productMods/WEB-INF/filegraph/tbox/vivo-core-1.2.owl
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31
productMods/WEB-INF/ontologies/user/vivo-core-1.2-annotations.rdf
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@ -1065,9 +1065,9 @@
<rdf:Description rdf:about="http://purl.org/ontology/bibo/lccn">
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The Library of Congress Control Number or LCCN is a serially based system of numbering cataloging records in the Library of Congress in the United States.</vitro:publicDescriptionAnnot>
<rdfs:label xml:lang="en-US">lccn</rdfs:label>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupidentifiers"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">Library of Congress Control Number (LCCN)</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#Authorship">
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
@ -1114,7 +1114,7 @@
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">10</vitro:displayRankAnnot>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">1</vitro:displayLimitAnnot>
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A PMID (PubMed Identifier or PubMed Unique Identifier) is a unique number assigned to each PubMed citation of life sciences and biomedical scientific journal articles.</vitro:publicDescriptionAnnot>
<rdfs:label xml:lang="en-US">pmid</rdfs:label>
<rdfs:label xml:lang="en-US">PubMed Identifier</rdfs:label>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupidentifiers"/>
@ -2180,16 +2180,16 @@
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupidentifiers"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">isbn-10</rdfs:label>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">10</vitro:displayRankAnnot>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">1</vitro:displayLimitAnnot>
<rdfs:label xml:lang="en-US">International Standard Book Number (ISBN) 10</rdfs:label>
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The International Standard Book Number (ISBN) is a unique[1][2] numeric commercial book identifier based upon the 9-digit Standard Book Numbering (SBN) code created by Gordon Foster. The 10-digit ISBN format was developed by the International Organization for Standardization and was published in 1970 as international standard ISO 2108.</vitro:publicDescriptionAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://purl.org/ontology/bibo/oclcnum">
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupidentifiers"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">1</vitro:displayLimitAnnot>
<rdfs:label xml:lang="en-US">oclcnum</rdfs:label>
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An oclcnum is a sequential accession number assigned by OCLC as bibliographic records are entered into OCLC WorldCat (the OCLC Online Union Catalog).</vitro:publicDescriptionAnnot>
<rdfs:label xml:lang="en-US">Online Computer Library Center (OCLC) number</rdfs:label>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">1</vitro:displayRankAnnot>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
@ -2375,8 +2375,8 @@
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupidentifiers"/>
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The International Standard Book Number (ISBN) is a unique[1][2] numeric commercial book identifier based upon the 9-digit Standard Book Numbering (SBN) code created by Gordon Foster.Since 1 January 2007, ISBNs have contained 13 digits, a format that is compatible with Bookland EAN-13s.</vitro:publicDescriptionAnnot>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">isbn-13</rdfs:label>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">International Standard Book Number (ISBN) 13</rdfs:label>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">1</vitro:displayLimitAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://aims.fao.org/aos/geopolitical.owl#hasNationality">
@ -2523,10 +2523,10 @@
</rdf:Description>
<rdf:Description rdf:about="http://purl.org/ontology/bibo/eanucc13">
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EAN International-Uniform Code Council (EAN-UCC) was a supply chain standards family name, formally the EAN.UCC System, that included product barcodes which are printed on the great majority of products available in stores worldwide and electronic commerce standards.</vitro:publicDescriptionAnnot>
<rdfs:label xml:lang="en-US">EAN International-Uniform Code Council (EAN-UCC) 13</rdfs:label>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupidentifiers"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">ean/ucc-13</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#hasCurrentMember">
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
@ -2547,9 +2547,9 @@
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://purl.org/ontology/bibo/doi">
<rdfs:label xml:lang="en-US">doi</rdfs:label>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<rdfs:label xml:lang="en-US">Digital Object Identifier (DOI)</rdfs:label>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">1</vitro:displayRankAnnot>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupidentifiers"/>
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The Digital Object Identifier (DOI) System provides for persistent identification of content objects in the digital environment. "DOI names are assigned to any entity for use on digital networks. They are used to provide current information, including where they (or information about them) can be found on the Internet. Information about a digital object may change over time, including where to find it, but its DOI name will not change."</vitro:publicDescriptionAnnot>
@ -2596,6 +2596,13 @@
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#eRACommonsId">
<rdfs:label xml:lang="en-US">eRA Commons id</rdfs:label>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupidentifiers"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">15</vitro:displayRankAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://purl.org/ontology/bibo/volume">
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A volume number.</vitro:publicDescriptionAnnot>
<rdfs:label xml:lang="en-US">volume</rdfs:label>
@ -2847,9 +2854,9 @@
<rdf:Description rdf:about="http://purl.org/ontology/bibo/issn">
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a periodical publication.</vitro:publicDescriptionAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">International Standard Serial Number (ISSN)</rdfs:label>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupidentifiers"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">issn</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#patentNumber">
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupidentifiers"/>
@ -2925,8 +2932,8 @@
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">false</vitro:selectFromExistingAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#PresenterRole">
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">Presenter Role</rdfs:label>
@ -3340,8 +3347,8 @@
</rdf:Description>
<rdf:Description rdf:about="http://purl.org/ontology/bibo/Website">
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<rdfs:label xml:lang="en-US">Website</rdfs:label>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGrouppublications"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
@ -4165,9 +4172,9 @@
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#NonFacultyAcademicPosition">
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">Non-Faculty Academic Position</rdfs:label>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://aims.fao.org/aos/geopolitical.owl#landAreaUnit">
@ -4413,7 +4420,7 @@
<rdf:Description rdf:about="http://purl.org/ontology/bibo/eissn">
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">eissn</rdfs:label>
<rdfs:label xml:lang="en-US">Electronic International Standard Serial Number (EISSN)</rdfs:label>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupidentifiers"/>
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a periodical publication. The eissn is an issn for electronic periodicals.</vitro:publicDescriptionAnnot>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">90</vitro:displayRankAnnot>

12
productMods/WEB-INF/submodels/scires-1.2.owl
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@ -106,11 +106,6 @@ NOTE: For now we are not addressing whether this is a subclass of foaf:Agent</vi
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 1 Clinical Trial</vitro:shortDef>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000016"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A0">
<owl:allValuesFrom rdf:resource="http://purl.org/ontology/bibo/Document"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Restriction"/>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ERO_0000460"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0100026">
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An organism is a material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment.</vitro:shortDef>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI: An organism is material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.
@ -135,10 +130,15 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In Phase 3 trials, an experimental study drug or treatment is given to large groups of people (1,000-3,000) to confirm its effectiveness, monitor side effects, compare it to commonly used treatments, and collect information that will allow the experimental drug or treatment to be used safely.
</vitro:descriptionAnnot>
</rdf:Description>
<rdf:Description rdf:nodeID="A0">
<owl:allValuesFrom rdf:resource="http://purl.org/ontology/bibo/Document"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Restriction"/>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ERO_0000460"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000004">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
<rdfs:subClassOf rdf:nodeID="A0"/>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:descriptionAnnot>
<rdfs:subClassOf rdf:nodeID="A0"/>
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Equipment"/>
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:shortDef>
</rdf:Description>

2500
productMods/WEB-INF/submodels/vivo-core-1.2.owl
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