VIVO-692 Restrict LOD by Publish level, not by Display level

Create a new annotation for properties and classes, HiddenFromPublishBelowRoleLevelAnnot.
Provide the means to initialize these annotations, edit them, and display them in the verbose property display.
Create a Permission and some requested actions so the policies can decide which statements must be filtered out, based on the user's role.
Add unit tests and improve acceptance tests

utilities/release1.6.1-scripts/addPublishTriplesTovivo-tbox2.rb

@@ -0,0 +1,78 @@
+=begin
+go through the lines of the file.
+
+If you find a line that matches
+vitro:hiddenFromDisplayBelowRoleLevelAnnot
+and followed by a line that matches 
+<http://vitro.mannlib.cornell.edu/ns/vitro/role#public> ;
+--where "public" may be any string
+Insert 2 lines after the second one, replacing Display by Publish on the first, and duplicating the second.
+
+If you find a line that contains 
+vitro:hiddenFromDisplayBelowRoleLevelAnnot
+and does not match it, or is not followed by a line that matches 
+<http://vitro.mannlib.cornell.edu/ns/vitro/role#public> ;
+Issue a warning and continue.
+
+<http://vitro.mannlib.cornell.edu/ns/vitro/0.7#hiddenFromDisplayBelowRoleLevelAnnot>
+        <http://vitro.mannlib.cornell.edu/ns/vitro/role#public> ;
+
+=end
+
+FILE_PATH = "/Users/jeb228/Documents/EclipseStuff/vivoWorkspace/vivoCornell/productMods/bjl23/ingest/weill/grants/submodels/vivo-tbox2.ttl"
+DISPLAY_URI = "<http://vitro.mannlib.cornell.edu/ns/vitro/0.7#hiddenFromDisplayBelowRoleLevelAnnot>"
+
+def read_the_file()
+  @lines = File.readlines(FILE_PATH);
+end
+
+def scan_the_lines()
+  @lines.each_index do |i|
+    @line1 = @lines[i]
+    @line2 = @lines[i+1]
+    @index = i
+    if linesContainMatch()
+      replicateProperty()
+    else
+      checkForMismatch()
+    end
+  end
+end
+
+def linesContainMatch()
+  return false unless @line1.strip() == DISPLAY_URI
+  return false unless @line2
+  return false unless m = @line2.match(/<http:\/\/vitro\.mannlib\.cornell\.edu\/ns\/vitro\/role#(.*)>/)
+  @role = m[1]
+end
+
+def replicateProperty()
+  newline1 = @line1.gsub(/Display/, "Publish")
+  newline2 = @line2.gsub(/#.*>/, "##{@role}>")
+  @lines.insert(@index + 2, newline1, newline2)
+end
+
+def checkForMismatch()
+  return false unless @line1.strip() == DISPLAY_URI
+  if !@line2
+    puts "Found display property at end of file"
+    return
+  end
+  if !@line2.match(/^\s*<http:\/\/vitro\.mannlib\.cornell\.edu\/ns\/vitro\/role#(.*)>\s*;\s*$/)
+    puts "Found bogus clutter in the second line (#{@index}) '#{@line2}'"
+    return
+  end
+end
+
+def write_the_file()
+  f = File.new(FILE_PATH+"-modified", "w") 
+  @lines.each() do |line|
+    f.write(line)
+  end
+  f.close()
+end
+
+read_the_file()
+scan_the_lines()
+write_the_file()
+