diff --git a/api/pom.xml b/api/pom.xml
index 5e15d44e..2dbf8485 100644
--- a/api/pom.xml
+++ b/api/pom.xml
@@ -56,11 +56,6 @@
2.5.6
-
- org.vivoweb.dependencies
- agrovocws
- 3.0
-
org.vivoweb.dependencies
oim.vivo.scimapcore
diff --git a/api/src/main/java/edu/cornell/mannlib/semservices/service/impl/AgrovocService.java b/api/src/main/java/edu/cornell/mannlib/semservices/service/impl/AgrovocService.java
index d111b645..17b719f6 100644
--- a/api/src/main/java/edu/cornell/mannlib/semservices/service/impl/AgrovocService.java
+++ b/api/src/main/java/edu/cornell/mannlib/semservices/service/impl/AgrovocService.java
@@ -17,6 +17,7 @@ import java.util.HashSet;
import java.util.Iterator;
import java.util.LinkedHashSet;
import java.util.List;
+import java.util.concurrent.TimeUnit;
import javax.xml.parsers.ParserConfigurationException;
import javax.xml.rpc.ServiceException;
@@ -28,8 +29,6 @@ import net.sf.json.JSONSerializer;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
-import org.fao.www.webservices.AgrovocWS.ACSWWebService;
-import org.fao.www.webservices.AgrovocWS.ACSWWebServiceServiceLocator;
import org.w3c.dom.Attr;
import org.w3c.dom.Document;
import org.w3c.dom.NamedNodeMap;
@@ -56,7 +55,6 @@ import edu.cornell.mannlib.vitro.webapp.web.URLEncoder;
public class AgrovocService implements ExternalConceptService {
protected final Log logger = LogFactory.getLog(getClass());
- private java.lang.String AgrovocWS_address = "http://agrovoc.fao.org/axis/services/SKOSWS";
private final String schemeUri = "http://aims.fao.org/aos/agrovoc/agrovocScheme";
private final String ontologyName = "agrovoc";
private final String format = "SKOS";
@@ -136,9 +134,8 @@ public class AgrovocService implements ExternalConceptService {
if (closeMatch.startsWith("http://dbpedia.org")) {
try {
- String description = getDbpediaDescription(closeMatch);
- // System.out.println("description: "+ description);
- c.setDefinition(description);
+ String description = getDbpediaDescription(closeMatch);
+ c.setDefinition(description);
} catch (Exception ex) {
logger.error("An error occurred in the process of retrieving dbpedia description", ex);
}
@@ -190,153 +187,6 @@ public class AgrovocService implements ExternalConceptService {
return concept;
}
- @Deprecated
- protected String getTermcodeByTerm(String term) throws Exception {
- String result = new String();
- ACSWWebServiceServiceLocator locator = new ACSWWebServiceServiceLocator();
- try {
- URL url = new URL(AgrovocWS_address);
- ACSWWebService agrovoc_service = locator.getACSWWebService(url);
- result = agrovoc_service.getTermcodeByTerm(term);
- } catch (ServiceException e) {
- logger.error("service exception", e);
- throw e;
- } catch (RemoteException e) {
- logger.error("remote exception", e);
- throw e;
- } catch (MalformedURLException e) {
- logger.error("malformed URL exception", e);
- throw e;
- }
- return result;
- }
-
- protected String getTermCodeByTermAndLangXML(String ontologyName,
- String searchString, String lang, String codeName, String format) {
- String result = new String();
- ACSWWebServiceServiceLocator locator = new ACSWWebServiceServiceLocator();
- try {
- URL url = new URL(AgrovocWS_address);
- ACSWWebService agrovoc_service = locator.getACSWWebService(url);
- result = agrovoc_service.getTermCodeByTermAndLangXML(ontologyName,
- searchString, lang, codeName, format);
- } catch (ServiceException e) {
- logger.error("service exception", e);
- e.printStackTrace();
- } catch (RemoteException e) {
- e.printStackTrace();
- } catch (MalformedURLException e) {
- e.printStackTrace();
- }
- return result;
- }
-
- protected String getURIByTermAndLangXML(String ontologyName, String term,
- String searchMode, String format, String lang) {
- String result = new String();
- ACSWWebServiceServiceLocator locator = new ACSWWebServiceServiceLocator();
- try {
- URL url = new URL(AgrovocWS_address);
- ACSWWebService agrovoc_service = locator.getACSWWebService(url);
- result = agrovoc_service.getURIByTermAndLangXML(ontologyName, term,
- searchMode, format, lang);
- } catch (ServiceException e) {
- e.printStackTrace();
- } catch (RemoteException e) {
- e.printStackTrace();
- } catch (MalformedURLException e) {
- e.printStackTrace();
- }
-
- return result;
- }
-
- // Creating method for term expansion
- protected String getTermExpansion(String ontologyName, String term,
- String searchMode, String format, String lang) {
- String result = new String();
- ACSWWebServiceServiceLocator locator = new ACSWWebServiceServiceLocator();
- try {
- URL url = new URL(AgrovocWS_address);
- ACSWWebService agrovoc_service = locator.getACSWWebService(url);
- result = agrovoc_service.getTermExpansion(ontologyName, term,
- format, searchMode, lang); // the actual call has this order
- // for parameters
- } catch (ServiceException e) {
- e.printStackTrace();
- } catch (RemoteException e) {
- e.printStackTrace();
- } catch (MalformedURLException e) {
- e.printStackTrace();
- }
-
- return result;
- }
-
- protected String getConceptInfoByTermcodeXML(String termcode, String format) {
- String result = new String();
- ACSWWebServiceServiceLocator locator = new ACSWWebServiceServiceLocator();
- try {
- URL url = new URL(AgrovocWS_address);
- ACSWWebService agrovoc_service = locator.getACSWWebService(url);
- result = agrovoc_service.getConceptInfoByTermcodeXML(termcode,
- format);
- } catch (ServiceException e) {
- logger.error("service exception", e);
- e.printStackTrace();
- } catch (RemoteException e) {
- e.printStackTrace();
- } catch (MalformedURLException e) {
- e.printStackTrace();
- }
-
- return result;
- }
-
- protected String getConceptByKeyword(String ontologyName,
- String searchString, String format, String searchMode, String lang) {
- String result = new String();
- ACSWWebServiceServiceLocator locator = new ACSWWebServiceServiceLocator();
- try {
- URL url = new URL(AgrovocWS_address);
- ACSWWebService agrovoc_service = locator.getACSWWebService(url);
- result = agrovoc_service.getConceptByKeyword(ontologyName,
- searchString, format, searchMode, lang);
- } catch (ServiceException e) {
- logger.error("service exception", e);
- e.printStackTrace();
- } catch (RemoteException e) {
- e.printStackTrace();
- } catch (MalformedURLException e) {
- e.printStackTrace();
- }
-
- return result;
- }
-
- protected String getWsdl() {
- String result = new String();
- try {
-
- StringWriter sw = new StringWriter();
- URL rss = new URL(this.AgrovocWS_address + "?wsdl");
-
- BufferedReader in = new BufferedReader(new InputStreamReader(
- rss.openStream()));
- String inputLine;
- while ((inputLine = in.readLine()) != null) {
- sw.write(inputLine);
- }
- in.close();
-
- result = sw.toString();
-
- } catch (Exception ex) {
- logger.error("error occurred in servlet", ex);
- }
- return result;
- }
-
public List getConceptsByURIWithSparql(String uri)
throws Exception {
// deprecating this method...just return an empty list
@@ -440,8 +290,8 @@ public class AgrovocService implements ExternalConceptService {
try {
Query query = QueryFactory.create(qs);
- qexec = QueryExecutionFactory.sparqlService(this.dbpedia_endpoint,
- query);
+ qexec = QueryExecutionFactory.sparqlService(this.dbpedia_endpoint, query);
+ qexec.setTimeout(5000, TimeUnit.MILLISECONDS);
resultList = new ArrayList();
ResultSet resultSet = qexec.execSelect();
int resultSetSize = 0;
@@ -501,28 +351,6 @@ public class AgrovocService implements ExternalConceptService {
}
}
- // Get concept using agrovoc service
- protected String getConceptInfoByURI(String ontologyName,
- String conceptURI, String format) {
- String result = new String();
- ACSWWebServiceServiceLocator locator = new ACSWWebServiceServiceLocator();
- try {
- URL url = new URL(AgrovocWS_address);
- ACSWWebService agrovoc_service = locator.getACSWWebService(url);
- result = agrovoc_service.getConceptByURI(ontologyName, conceptURI,
- format);
- } catch (ServiceException e) {
- logger.error("service exception", e);
- e.printStackTrace();
- } catch (RemoteException e) {
- e.printStackTrace();
- } catch (MalformedURLException e) {
- e.printStackTrace();
- }
-
- return result;
- }
-
/**
* The code here utilizes the SKOSMOS REST API for Agrovoc
* This returns JSON LD so we would parse JSON instead of RDF