diff --git a/doc/upgrade-1.1.txt b/doc/upgrade-1.1.txt index f290125a..6a0cec92 100644 --- a/doc/upgrade-1.1.txt +++ b/doc/upgrade-1.1.txt @@ -46,9 +46,9 @@ exceptions: with the revised ontology. See the section on "Ontology Changes" below for more information. * The first time Apache Tomcat starts up after the upgrade, it will - initiate a process that modifies the uploads directory (images), to align - the uploaded files with the revised file storage scheme. See the section - on "File Storage Changes" below for more information. + initiate a process that modifies the uploaded files directory (images), to + align the uploaded files with the revised file storage scheme. See the + section on "File Storage Changes" below for more information. ------------------------------------------------------------------------------- @@ -141,19 +141,19 @@ the automated upgrade process was executed successfully. The ontology alignment process will create the following files in the Tomcat webapps/vivo/WEB-INF directory: ontologies/update/logs/knowledgeBaseUpdate.log - a log of a summary of updates that were made to the knowledge base and notes + A log of a summary of updates that were made to the knowledge base and notes about some recommended manual reviews. This file should end with "Successfully finished processing ontology changes". ontologies/update/logs/knowledgeBaseUpdate.error.log - a log of errors that were encountered during the upgrade process. This file + A log of errors that were encountered during the upgrade process. This file should be empty if the upgrade was successful. ontologies/update/changedData/removedData.n3 - an N3 file containing all the statements that were removed from the knowledge base. + An N3 file containing all the statements that were removed from the knowledge base. ontologies/update/changedData/addedData.n3 - an N3 file containing all the statements that were added to the knowledge base. + An N3 file containing all the statements that were added to the knowledge base. B. Ontology knowledge base manual review @@ -195,7 +195,7 @@ the following types of changes: should be reasserted using the newly added property. Annotation property default values - It a site has modified the value of a vitro annotation (such as + If a site has modified the value of a vitro annotation (such as displayRankAnnot or displayLimitAnnot) so that it is no longer using the default, then that setting will be left unchanged. If a site is using the default value of a vitro annotation, and the @@ -211,7 +211,7 @@ A. Verifying the File Storage upgrade If the File Storage upgrade process is not successful, Tomcat's "vivo.all.log" log file will contain an exception listing with more information. -The File Storage upgrade process will create these files in the Vivo upload +The File Storage upgrade process will create these files in the VIVO upload directory: upgrade/upgradeLog.2010-00-00T00-00-00.txt @@ -282,7 +282,7 @@ which makes the required changes: Each image file will be copied to its new location in the upload directory. - Cleaning the old image directory. + Cleaning the old image directory All image files are removed from their old locations in the upload directory.