1. Completed the caching-like version for temporal graph for grants.
2. Changed the timeout for front-end getter for temporal vis data since the first time a user requests grant comparison it might take a long time.
This commit is contained in:
cdtank
parent
b1950352e8
commit
c49e8d1d75
8 changed files with 1906 additions and 1530 deletions
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@ -1,332 +1,354 @@
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/* $This file is distributed under the terms of the license in /doc/license.txt$ */
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package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.entitycomparison.cached;
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import java.util.ArrayList;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import org.apache.commons.lang.StringEscapeUtils;
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import org.apache.commons.lang.StringUtils;
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import org.apache.commons.logging.Log;
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import com.google.gson.Gson;
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import com.hp.hpl.jena.query.Dataset;
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import com.hp.hpl.jena.rdf.model.Model;
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import edu.cornell.mannlib.vitro.webapp.beans.Portal;
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import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
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import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
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import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
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import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.DataVisualizationController;
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import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
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import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
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import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.entitycomparison.EntityComparisonUtilityFunctions;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Activity;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.ConstructedModelTracker;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Entity;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.JsonObject;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.SubEntity;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.SelectOnModelUtilities;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.UtilityFunctions;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.VisualizationRequestHandler;
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public class TemporalGrantVisualizationRequestHandler implements
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VisualizationRequestHandler {
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@Override
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public ResponseValues generateStandardVisualization(
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VitroRequest vitroRequest, Log log, Dataset dataset)
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throws MalformedQueryParametersException {
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String entityURI = vitroRequest
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.getParameter(VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY);
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if (StringUtils.isBlank(entityURI)) {
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entityURI = EntityComparisonUtilityFunctions
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.getStaffProvidedOrComputedHighestLevelOrganization(
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log,
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dataset,
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vitroRequest);
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}
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System.out.println("current models in the system are");
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for (Map.Entry<String, Model> entry : ConstructedModelTracker.getAllModels().entrySet()) {
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System.out.println(entry.getKey() + " -> " + entry.getValue().size());
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}
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return prepareStandaloneMarkupResponse(vitroRequest, entityURI);
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}
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@Override
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public Map<String, String> generateDataVisualization(
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VitroRequest vitroRequest, Log log, Dataset dataset)
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throws MalformedQueryParametersException {
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String entityURI = vitroRequest
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.getParameter(VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY);
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/*
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* This will provide the data in json format mainly used for standalone temporal vis.
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* */
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if (VisualizationFrameworkConstants.TEMPORAL_GRAPH_JSON_DATA_VIS_MODE
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.equalsIgnoreCase(vitroRequest
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.getParameter(VisualizationFrameworkConstants.VIS_MODE_KEY))) {
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if (StringUtils.isNotBlank(entityURI)) {
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return getSubjectEntityAndGenerateDataResponse(
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vitroRequest,
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log,
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dataset,
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entityURI,
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EntityComparisonConstants.DataVisMode.JSON);
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} else {
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return getSubjectEntityAndGenerateDataResponse(
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vitroRequest,
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log,
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dataset,
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EntityComparisonUtilityFunctions
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.getStaffProvidedOrComputedHighestLevelOrganization(
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log,
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dataset,
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vitroRequest),
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EntityComparisonConstants.DataVisMode.JSON);
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}
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} else {
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/*
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* This provides csv download files for the content in the tables.
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* */
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return getSubjectEntityAndGenerateDataResponse(
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vitroRequest,
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log,
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dataset,
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entityURI,
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EntityComparisonConstants.DataVisMode.CSV);
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}
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}
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private Map<String, String> prepareDataErrorResponse() {
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String outputFileName = "no-organization_grants-per-year.csv";
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Map<String, String> fileData = new HashMap<String, String>();
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fileData.put(DataVisualizationController.FILE_NAME_KEY,
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outputFileName);
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fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
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"application/octet-stream");
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fileData.put(DataVisualizationController.FILE_CONTENT_KEY, "");
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return fileData;
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}
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@Override
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public Object generateAjaxVisualization(VitroRequest vitroRequest, Log log,
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Dataset dataset) throws MalformedQueryParametersException {
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throw new UnsupportedOperationException("Entity Grant Count "
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+ "does not provide Ajax response.");
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}
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private Map<String, String> getSubjectEntityAndGenerateDataResponse(
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VitroRequest vitroRequest, Log log, Dataset dataset,
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String subjectEntityURI, EntityComparisonConstants.DataVisMode visMode)
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throws MalformedQueryParametersException {
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Entity organizationEntity = SelectOnModelUtilities
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.getSubjectOrganizationHierarchy(dataset, subjectEntityURI);
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if (organizationEntity.getSubEntities() == null) {
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if (EntityComparisonConstants.DataVisMode.JSON.equals(visMode)) {
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return prepareStandaloneDataErrorResponse();
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} else {
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return prepareDataErrorResponse();
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}
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}
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Map<String, Activity> grantURIForAssociatedPeopleToVO = new HashMap<String, Activity>();
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Map<String, Activity> allGrantURIToVO = new HashMap<String, Activity>();
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allGrantURIToVO = SelectOnModelUtilities.getGrantsForAllSubOrganizations(dataset, organizationEntity);
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if (allGrantURIToVO.isEmpty() && grantURIForAssociatedPeopleToVO.isEmpty()) {
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if (EntityComparisonConstants.DataVisMode.JSON.equals(visMode)) {
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return prepareStandaloneDataErrorResponse();
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} else {
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return prepareDataErrorResponse();
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}
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} else {
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if (EntityComparisonConstants.DataVisMode.JSON.equals(visMode)) {
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return prepareStandaloneDataResponse(vitroRequest, organizationEntity);
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} else {
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return prepareDataResponse(organizationEntity);
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}
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}
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}
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private Map<String, String> prepareStandaloneDataErrorResponse() {
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Map<String, String> fileData = new HashMap<String, String>();
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fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
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"application/octet-stream");
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fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
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"{\"error\" : \"No Grants for this Organization found in VIVO.\"}");
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return fileData;
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}
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private Map<String, String> prepareStandaloneDataResponse(
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VitroRequest vitroRequest,
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Entity entity) {
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Map<String, String> fileData = new HashMap<String, String>();
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fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
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"application/octet-stream");
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fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
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writeGrantsOverTimeJSON(vitroRequest,
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entity.getSubEntities()));
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return fileData;
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}
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/**
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* Provides response when json file containing the grant count over the
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* years is requested.
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*
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* @param entity
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* @param subentities
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* @param subOrganizationTypesResult
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*/
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private Map<String, String> prepareDataResponse(Entity entity) {
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String entityLabel = entity.getEntityLabel();
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/*
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* To make sure that null/empty records for entity names do not cause any mischief.
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* */
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if (StringUtils.isBlank(entityLabel)) {
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entityLabel = "no-organization";
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}
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String outputFileName = UtilityFunctions.slugify(entityLabel)
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+ "_grants-per-year" + ".csv";
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Map<String, String> fileData = new HashMap<String, String>();
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fileData.put(DataVisualizationController.FILE_NAME_KEY,
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outputFileName);
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fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
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"application/octet-stream");
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fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
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getEntityGrantsPerYearCSVContent(entity));
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return fileData;
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}
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private TemplateResponseValues prepareStandaloneMarkupResponse(VitroRequest vreq,
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String entityURI) {
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Portal portal = vreq.getPortal();
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String standaloneTemplate = "entityComparisonOnGrantsStandalone.ftl";
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String organizationLabel = EntityComparisonUtilityFunctions.getEntityLabelFromDAO(vreq,
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entityURI);
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Map<String, Object> body = new HashMap<String, Object>();
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body.put("portalBean", portal);
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body.put("title", organizationLabel + " - Temporal Graph Visualization");
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body.put("organizationURI", entityURI);
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body.put("organizationLabel", organizationLabel);
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return new TemplateResponseValues(standaloneTemplate, body);
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}
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/**
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* Function to generate a json file for year <-> grant count mapping.
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* @param vreq
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* @param subentities
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* @param subOrganizationTypesResult
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*/
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private String writeGrantsOverTimeJSON(VitroRequest vreq,
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Set<SubEntity> subentities) {
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Gson json = new Gson();
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Set<JsonObject> subEntitiesJson = new HashSet<JsonObject>();
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for (SubEntity subentity : subentities) {
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JsonObject entityJson = new JsonObject(
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subentity.getIndividualLabel());
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List<List<Integer>> yearGrantCount = new ArrayList<List<Integer>>();
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for (Map.Entry<String, Integer> grantEntry : UtilityFunctions
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.getYearToActivityCount(subentity.getActivities())
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.entrySet()) {
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List<Integer> currentGrantYear = new ArrayList<Integer>();
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if (grantEntry.getKey().equals(
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VOConstants.DEFAULT_GRANT_YEAR)) {
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currentGrantYear.add(-1);
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} else {
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currentGrantYear.add(Integer.parseInt(grantEntry.getKey()));
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}
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currentGrantYear.add(grantEntry.getValue());
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yearGrantCount.add(currentGrantYear);
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}
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entityJson.setYearToActivityCount(yearGrantCount);
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entityJson.setOrganizationTypes(subentity.getEntityTypeLabels());
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entityJson.setEntityURI(subentity.getIndividualURI());
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if (subentity.getEntityClass().equals(VOConstants.EntityClassType.PERSON)) {
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entityJson.setVisMode("PERSON");
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} else if (subentity.getEntityClass().equals(VOConstants.EntityClassType.ORGANIZATION)) {
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entityJson.setVisMode("ORGANIZATION");
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}
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subEntitiesJson.add(entityJson);
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}
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return json.toJson(subEntitiesJson);
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}
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private String getEntityGrantsPerYearCSVContent(Entity entity) {
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StringBuilder csvFileContent = new StringBuilder();
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csvFileContent.append("Entity Name, Grant Count, Entity Type\n");
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for (SubEntity subEntity : entity.getSubEntities()) {
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csvFileContent.append(StringEscapeUtils.escapeCsv(subEntity.getIndividualLabel()));
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csvFileContent.append(", ");
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csvFileContent.append(subEntity.getActivities().size());
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csvFileContent.append(", ");
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String allTypes = StringUtils.join(subEntity.getEntityTypeLabels(), "; ");
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csvFileContent.append(StringEscapeUtils.escapeCsv(allTypes));
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csvFileContent.append("\n");
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}
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return csvFileContent.toString();
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}
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}
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/* $This file is distributed under the terms of the license in /doc/license.txt$ */
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package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.entitycomparison.cached;
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import java.util.ArrayList;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import org.apache.commons.lang.StringEscapeUtils;
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import org.apache.commons.lang.StringUtils;
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import org.apache.commons.logging.Log;
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import com.google.gson.Gson;
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import com.hp.hpl.jena.query.Dataset;
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import com.hp.hpl.jena.rdf.model.Model;
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import edu.cornell.mannlib.vitro.webapp.beans.Portal;
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import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
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import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
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import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
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import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.DataVisualizationController;
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import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
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import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
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import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.entitycomparison.EntityComparisonUtilityFunctions;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Activity;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.ConstructedModelTracker;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Entity;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.JsonObject;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.SubEntity;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.SelectOnModelUtilities;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.UtilityFunctions;
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import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.VisualizationRequestHandler;
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public class TemporalGrantVisualizationRequestHandler implements
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VisualizationRequestHandler {
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@Override
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public ResponseValues generateStandardVisualization(
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VitroRequest vitroRequest, Log log, Dataset dataset)
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throws MalformedQueryParametersException {
|
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|
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String entityURI = vitroRequest
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.getParameter(VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY);
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if (StringUtils.isBlank(entityURI)) {
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entityURI = EntityComparisonUtilityFunctions
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.getStaffProvidedOrComputedHighestLevelOrganization(
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log,
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dataset,
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vitroRequest);
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|
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}
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|
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System.out.println("current models in the system are");
|
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for (Map.Entry<String, Model> entry : ConstructedModelTracker.getAllModels().entrySet()) {
|
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System.out.println(entry.getKey() + " -> " + entry.getValue().size());
|
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}
|
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|
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return prepareStandaloneMarkupResponse(vitroRequest, entityURI);
|
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}
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|
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@Override
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public Map<String, String> generateDataVisualization(
|
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VitroRequest vitroRequest, Log log, Dataset dataset)
|
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throws MalformedQueryParametersException {
|
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|
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String entityURI = vitroRequest
|
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.getParameter(VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY);
|
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|
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/*
|
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* This will provide the data in json format mainly used for standalone temporal vis.
|
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* */
|
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if (VisualizationFrameworkConstants.TEMPORAL_GRAPH_JSON_DATA_VIS_MODE
|
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.equalsIgnoreCase(vitroRequest
|
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.getParameter(VisualizationFrameworkConstants.VIS_MODE_KEY))) {
|
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|
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if (StringUtils.isNotBlank(entityURI)) {
|
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|
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return getSubjectEntityAndGenerateDataResponse(
|
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vitroRequest,
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log,
|
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dataset,
|
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entityURI,
|
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EntityComparisonConstants.DataVisMode.JSON);
|
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} else {
|
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|
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return getSubjectEntityAndGenerateDataResponse(
|
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vitroRequest,
|
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log,
|
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dataset,
|
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EntityComparisonUtilityFunctions
|
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.getStaffProvidedOrComputedHighestLevelOrganization(
|
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log,
|
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dataset,
|
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vitroRequest),
|
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EntityComparisonConstants.DataVisMode.JSON);
|
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}
|
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|
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} else {
|
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/*
|
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* This provides csv download files for the content in the tables.
|
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* */
|
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return getSubjectEntityAndGenerateDataResponse(
|
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vitroRequest,
|
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log,
|
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dataset,
|
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entityURI,
|
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EntityComparisonConstants.DataVisMode.CSV);
|
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}
|
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}
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private Map<String, String> prepareDataErrorResponse() {
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|
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String outputFileName = "no-organization_grants-per-year.csv";
|
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|
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Map<String, String> fileData = new HashMap<String, String>();
|
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|
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fileData.put(DataVisualizationController.FILE_NAME_KEY,
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outputFileName);
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fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
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"application/octet-stream");
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fileData.put(DataVisualizationController.FILE_CONTENT_KEY, "");
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return fileData;
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}
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|
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@Override
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public Object generateAjaxVisualization(VitroRequest vitroRequest, Log log,
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Dataset dataset) throws MalformedQueryParametersException {
|
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|
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throw new UnsupportedOperationException("Entity Grant Count "
|
||||
+ "does not provide Ajax response.");
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||||
}
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|
||||
private Map<String, String> getSubjectEntityAndGenerateDataResponse(
|
||||
VitroRequest vitroRequest, Log log, Dataset dataset,
|
||||
String subjectEntityURI, EntityComparisonConstants.DataVisMode visMode)
|
||||
throws MalformedQueryParametersException {
|
||||
|
||||
Entity organizationEntity = SelectOnModelUtilities
|
||||
.getSubjectOrganizationHierarchy(dataset, subjectEntityURI);
|
||||
|
||||
if (organizationEntity.getSubEntities() == null) {
|
||||
|
||||
if (EntityComparisonConstants.DataVisMode.JSON.equals(visMode)) {
|
||||
return prepareStandaloneDataErrorResponse();
|
||||
} else {
|
||||
return prepareDataErrorResponse();
|
||||
}
|
||||
}
|
||||
|
||||
Map<String, Activity> grantURIForAssociatedPeopleToVO = new HashMap<String, Activity>();
|
||||
Map<String, Activity> allGrantURIToVO = new HashMap<String, Activity>();
|
||||
|
||||
/**
|
||||
* TODO: Change this to use DataSet when an optimum solution is reached. Currently grant constructs are causing
|
||||
* endless wait times on a large dataset like UFl. When I tried to add all the datasets manually to the Datasource
|
||||
* it responded in an order of magnitude higher than with just the defaultOntModel.
|
||||
* Brian Lowe is looking into this weird behavior see http://issues.library.cornell.edu/browse/NIHVIVO-2275
|
||||
*/
|
||||
// DataSource dataSource = DatasetFactory.create();
|
||||
// dataSource.setDefaultModel(vitroRequest.getJenaOntModel());
|
||||
|
||||
allGrantURIToVO = SelectOnModelUtilities.getGrantsForAllSubOrganizations(dataset, organizationEntity);
|
||||
|
||||
Entity organizationWithAssociatedPeople = SelectOnModelUtilities
|
||||
.getSubjectOrganizationAssociatedPeople(dataset, subjectEntityURI);
|
||||
|
||||
if (organizationWithAssociatedPeople.getSubEntities() != null) {
|
||||
|
||||
grantURIForAssociatedPeopleToVO = SelectOnModelUtilities
|
||||
.getPublicationsForAssociatedPeople(dataset, organizationWithAssociatedPeople.getSubEntities());
|
||||
|
||||
organizationEntity = EntityComparisonUtilityFunctions.mergeEntityIfShareSameURI(
|
||||
organizationEntity,
|
||||
organizationWithAssociatedPeople);
|
||||
}
|
||||
|
||||
if (allGrantURIToVO.isEmpty() && grantURIForAssociatedPeopleToVO.isEmpty()) {
|
||||
|
||||
if (EntityComparisonConstants.DataVisMode.JSON.equals(visMode)) {
|
||||
return prepareStandaloneDataErrorResponse();
|
||||
} else {
|
||||
return prepareDataErrorResponse();
|
||||
}
|
||||
|
||||
} else {
|
||||
|
||||
if (EntityComparisonConstants.DataVisMode.JSON.equals(visMode)) {
|
||||
return prepareStandaloneDataResponse(vitroRequest, organizationEntity);
|
||||
} else {
|
||||
return prepareDataResponse(organizationEntity);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
private Map<String, String> prepareStandaloneDataErrorResponse() {
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
|
||||
"{\"error\" : \"No Grants for this Organization found in VIVO.\"}");
|
||||
return fileData;
|
||||
}
|
||||
|
||||
|
||||
private Map<String, String> prepareStandaloneDataResponse(
|
||||
VitroRequest vitroRequest,
|
||||
Entity entity) {
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
|
||||
writeGrantsOverTimeJSON(vitroRequest,
|
||||
entity.getSubEntities()));
|
||||
return fileData;
|
||||
}
|
||||
|
||||
/**
|
||||
* Provides response when json file containing the grant count over the
|
||||
* years is requested.
|
||||
*
|
||||
* @param entity
|
||||
* @param subentities
|
||||
* @param subOrganizationTypesResult
|
||||
*/
|
||||
private Map<String, String> prepareDataResponse(Entity entity) {
|
||||
|
||||
String entityLabel = entity.getEntityLabel();
|
||||
|
||||
/*
|
||||
* To make sure that null/empty records for entity names do not cause any mischief.
|
||||
* */
|
||||
if (StringUtils.isBlank(entityLabel)) {
|
||||
entityLabel = "no-organization";
|
||||
}
|
||||
|
||||
String outputFileName = UtilityFunctions.slugify(entityLabel)
|
||||
+ "_grants-per-year" + ".csv";
|
||||
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_NAME_KEY,
|
||||
outputFileName);
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
|
||||
getEntityGrantsPerYearCSVContent(entity));
|
||||
return fileData;
|
||||
}
|
||||
|
||||
|
||||
private TemplateResponseValues prepareStandaloneMarkupResponse(VitroRequest vreq,
|
||||
String entityURI) {
|
||||
|
||||
Portal portal = vreq.getPortal();
|
||||
String standaloneTemplate = "entityComparisonOnGrantsStandalone.ftl";
|
||||
|
||||
String organizationLabel = EntityComparisonUtilityFunctions.getEntityLabelFromDAO(vreq,
|
||||
entityURI);
|
||||
|
||||
Map<String, Object> body = new HashMap<String, Object>();
|
||||
body.put("portalBean", portal);
|
||||
body.put("title", organizationLabel + " - Temporal Graph Visualization");
|
||||
body.put("organizationURI", entityURI);
|
||||
body.put("organizationLabel", organizationLabel);
|
||||
|
||||
return new TemplateResponseValues(standaloneTemplate, body);
|
||||
}
|
||||
|
||||
/**
|
||||
* Function to generate a json file for year <-> grant count mapping.
|
||||
* @param vreq
|
||||
* @param subentities
|
||||
* @param subOrganizationTypesResult
|
||||
*/
|
||||
private String writeGrantsOverTimeJSON(VitroRequest vreq,
|
||||
Set<SubEntity> subentities) {
|
||||
|
||||
Gson json = new Gson();
|
||||
Set<JsonObject> subEntitiesJson = new HashSet<JsonObject>();
|
||||
|
||||
for (SubEntity subentity : subentities) {
|
||||
JsonObject entityJson = new JsonObject(
|
||||
subentity.getIndividualLabel());
|
||||
|
||||
List<List<Integer>> yearGrantCount = new ArrayList<List<Integer>>();
|
||||
|
||||
for (Map.Entry<String, Integer> grantEntry : UtilityFunctions
|
||||
.getYearToActivityCount(subentity.getActivities())
|
||||
.entrySet()) {
|
||||
|
||||
List<Integer> currentGrantYear = new ArrayList<Integer>();
|
||||
if (grantEntry.getKey().equals(
|
||||
VOConstants.DEFAULT_GRANT_YEAR)) {
|
||||
currentGrantYear.add(-1);
|
||||
} else {
|
||||
currentGrantYear.add(Integer.parseInt(grantEntry.getKey()));
|
||||
}
|
||||
|
||||
currentGrantYear.add(grantEntry.getValue());
|
||||
yearGrantCount.add(currentGrantYear);
|
||||
}
|
||||
|
||||
entityJson.setYearToActivityCount(yearGrantCount);
|
||||
|
||||
entityJson.setOrganizationTypes(subentity.getEntityTypeLabels());
|
||||
|
||||
entityJson.setEntityURI(subentity.getIndividualURI());
|
||||
|
||||
if (subentity.getEntityClass().equals(VOConstants.EntityClassType.PERSON)) {
|
||||
entityJson.setVisMode("PERSON");
|
||||
} else if (subentity.getEntityClass().equals(VOConstants.EntityClassType.ORGANIZATION)) {
|
||||
entityJson.setVisMode("ORGANIZATION");
|
||||
}
|
||||
|
||||
subEntitiesJson.add(entityJson);
|
||||
}
|
||||
|
||||
return json.toJson(subEntitiesJson);
|
||||
}
|
||||
|
||||
private String getEntityGrantsPerYearCSVContent(Entity entity) {
|
||||
|
||||
StringBuilder csvFileContent = new StringBuilder();
|
||||
|
||||
csvFileContent.append("Entity Name, Grant Count, Entity Type\n");
|
||||
|
||||
for (SubEntity subEntity : entity.getSubEntities()) {
|
||||
|
||||
csvFileContent.append(StringEscapeUtils.escapeCsv(subEntity.getIndividualLabel()));
|
||||
csvFileContent.append(", ");
|
||||
csvFileContent.append(subEntity.getActivities().size());
|
||||
csvFileContent.append(", ");
|
||||
|
||||
String allTypes = StringUtils.join(subEntity.getEntityTypeLabels(), "; ");
|
||||
|
||||
csvFileContent.append(StringEscapeUtils.escapeCsv(allTypes));
|
||||
csvFileContent.append("\n");
|
||||
}
|
||||
|
||||
return csvFileContent.toString();
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,350 +1,347 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.entitycomparison.cached;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.HashMap;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
|
||||
import org.apache.commons.lang.StringEscapeUtils;
|
||||
import org.apache.commons.lang.StringUtils;
|
||||
import org.apache.commons.logging.Log;
|
||||
|
||||
import com.google.gson.Gson;
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.beans.Portal;
|
||||
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
|
||||
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
|
||||
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
|
||||
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.DataVisualizationController;
|
||||
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.entitycomparison.EntityComparisonUtilityFunctions;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Activity;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.ConstructedModelTracker;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Entity;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.JsonObject;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.SubEntity;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.SelectOnModelUtilities;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.UtilityFunctions;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.VisualizationRequestHandler;
|
||||
|
||||
public class TemporalPublicationVisualizationRequestHandler implements
|
||||
VisualizationRequestHandler {
|
||||
|
||||
@Override
|
||||
public ResponseValues generateStandardVisualization(
|
||||
VitroRequest vitroRequest, Log log, Dataset dataset)
|
||||
throws MalformedQueryParametersException {
|
||||
|
||||
|
||||
String entityURI = vitroRequest
|
||||
.getParameter(VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY);
|
||||
|
||||
if (StringUtils.isBlank(entityURI)) {
|
||||
|
||||
entityURI = EntityComparisonUtilityFunctions
|
||||
.getStaffProvidedOrComputedHighestLevelOrganization(
|
||||
log,
|
||||
dataset,
|
||||
vitroRequest);
|
||||
|
||||
}
|
||||
|
||||
|
||||
System.out.println("current models in the system are");
|
||||
for (Map.Entry<String, Model> entry : ConstructedModelTracker.getAllModels().entrySet()) {
|
||||
System.out.println(entry.getKey() + " -> " + entry.getValue().size());
|
||||
}
|
||||
|
||||
return prepareStandaloneMarkupResponse(vitroRequest, entityURI);
|
||||
}
|
||||
|
||||
private Map<String, String> getSubjectEntityAndGenerateDataResponse(
|
||||
VitroRequest vitroRequest, Log log, Dataset dataset,
|
||||
String subjectEntityURI, EntityComparisonConstants.DataVisMode visMode)
|
||||
throws MalformedQueryParametersException {
|
||||
|
||||
|
||||
Entity organizationEntity = SelectOnModelUtilities
|
||||
.getSubjectOrganizationHierarchy(dataset, subjectEntityURI);
|
||||
|
||||
if (organizationEntity.getSubEntities() == null) {
|
||||
|
||||
if (EntityComparisonConstants.DataVisMode.JSON.equals(visMode)) {
|
||||
return prepareStandaloneDataErrorResponse();
|
||||
} else {
|
||||
return prepareDataErrorResponse();
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
Map<String, Activity> documentURIForAssociatedPeopleTOVO = new HashMap<String, Activity>();
|
||||
Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
|
||||
|
||||
allDocumentURIToVOs = SelectOnModelUtilities.getPublicationsForAllSubOrganizations(dataset, organizationEntity);
|
||||
|
||||
Entity organizationWithAssociatedPeople = SelectOnModelUtilities
|
||||
.getSubjectOrganizationAssociatedPeople(dataset, subjectEntityURI);
|
||||
|
||||
|
||||
if (organizationWithAssociatedPeople.getSubEntities() != null) {
|
||||
|
||||
documentURIForAssociatedPeopleTOVO = SelectOnModelUtilities
|
||||
.getPublicationsForAssociatedPeople(dataset, organizationWithAssociatedPeople.getSubEntities());
|
||||
|
||||
organizationEntity = EntityComparisonUtilityFunctions.mergeEntityIfShareSameURI(
|
||||
organizationEntity,
|
||||
organizationWithAssociatedPeople);
|
||||
}
|
||||
|
||||
if (allDocumentURIToVOs.isEmpty() && documentURIForAssociatedPeopleTOVO.isEmpty()) {
|
||||
|
||||
if (EntityComparisonConstants.DataVisMode.JSON.equals(visMode)) {
|
||||
return prepareStandaloneDataErrorResponse();
|
||||
} else {
|
||||
return prepareDataErrorResponse();
|
||||
}
|
||||
|
||||
} else {
|
||||
|
||||
if (EntityComparisonConstants.DataVisMode.JSON.equals(visMode)) {
|
||||
return prepareStandaloneDataResponse(vitroRequest, organizationEntity);
|
||||
} else {
|
||||
return prepareDataResponse(organizationEntity);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Provides response when json file containing the publication count over the
|
||||
* years is requested.
|
||||
*
|
||||
* @param entity
|
||||
* @param subentities
|
||||
* @param subOrganizationTypesResult
|
||||
*/
|
||||
private Map<String, String> prepareDataResponse(Entity entity) {
|
||||
|
||||
String entityLabel = entity.getEntityLabel();
|
||||
|
||||
/*
|
||||
* To make sure that null/empty records for entity names do not cause any mischief.
|
||||
* */
|
||||
if (StringUtils.isBlank(entityLabel)) {
|
||||
entityLabel = "no-organization";
|
||||
}
|
||||
|
||||
String outputFileName = UtilityFunctions.slugify(entityLabel)
|
||||
+ "_publications-per-year" + ".csv";
|
||||
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_NAME_KEY,
|
||||
outputFileName);
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
|
||||
getEntityPublicationsPerYearCSVContent(entity));
|
||||
return fileData;
|
||||
}
|
||||
|
||||
private Map<String, String> prepareDataErrorResponse() {
|
||||
|
||||
String outputFileName = "no-organization_publications-per-year.csv";
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_NAME_KEY,
|
||||
outputFileName);
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY, "");
|
||||
return fileData;
|
||||
}
|
||||
|
||||
private Map<String, String> prepareStandaloneDataErrorResponse() {
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
|
||||
"{\"error\" : \"No Publications for this Organization found in VIVO.\"}");
|
||||
return fileData;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Map<String, String> generateDataVisualization(
|
||||
VitroRequest vitroRequest, Log log, Dataset dataset)
|
||||
throws MalformedQueryParametersException {
|
||||
|
||||
String entityURI = vitroRequest
|
||||
.getParameter(VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY);
|
||||
|
||||
/*
|
||||
* This will provide the data in json format mainly used for standalone tmeporal vis.
|
||||
* */
|
||||
if (VisualizationFrameworkConstants.TEMPORAL_GRAPH_JSON_DATA_VIS_MODE
|
||||
.equalsIgnoreCase(vitroRequest.getParameter(
|
||||
VisualizationFrameworkConstants.VIS_MODE_KEY))) {
|
||||
|
||||
if (StringUtils.isNotBlank(entityURI)) {
|
||||
|
||||
return getSubjectEntityAndGenerateDataResponse(
|
||||
vitroRequest,
|
||||
log,
|
||||
dataset,
|
||||
entityURI,
|
||||
EntityComparisonConstants.DataVisMode.JSON);
|
||||
} else {
|
||||
|
||||
return getSubjectEntityAndGenerateDataResponse(
|
||||
vitroRequest,
|
||||
log,
|
||||
dataset,
|
||||
EntityComparisonUtilityFunctions
|
||||
.getStaffProvidedOrComputedHighestLevelOrganization(
|
||||
log,
|
||||
dataset,
|
||||
vitroRequest),
|
||||
EntityComparisonConstants.DataVisMode.JSON);
|
||||
}
|
||||
|
||||
} else {
|
||||
/*
|
||||
* This provides csv download files for the content in the tables.
|
||||
* */
|
||||
|
||||
return getSubjectEntityAndGenerateDataResponse(
|
||||
vitroRequest,
|
||||
log,
|
||||
dataset,
|
||||
entityURI,
|
||||
EntityComparisonConstants.DataVisMode.CSV);
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Override
|
||||
public Object generateAjaxVisualization(VitroRequest vitroRequest, Log log,
|
||||
Dataset dataset) throws MalformedQueryParametersException {
|
||||
throw new UnsupportedOperationException("Entity Pub Count does not provide Ajax Response.");
|
||||
}
|
||||
|
||||
private Map<String, String> prepareStandaloneDataResponse(
|
||||
VitroRequest vitroRequest,
|
||||
Entity entity) {
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
|
||||
writePublicationsOverTimeJSON(vitroRequest,
|
||||
entity.getSubEntities()));
|
||||
return fileData;
|
||||
}
|
||||
|
||||
private TemplateResponseValues prepareStandaloneMarkupResponse(VitroRequest vreq,
|
||||
String entityURI) {
|
||||
|
||||
Portal portal = vreq.getPortal();
|
||||
String standaloneTemplate = "entityComparisonOnPublicationsStandalone.ftl";
|
||||
|
||||
String organizationLabel = EntityComparisonUtilityFunctions
|
||||
.getEntityLabelFromDAO(vreq,
|
||||
entityURI);
|
||||
|
||||
Map<String, Object> body = new HashMap<String, Object>();
|
||||
body.put("portalBean", portal);
|
||||
body.put("title", organizationLabel + " - Temporal Graph Visualization");
|
||||
body.put("organizationURI", entityURI);
|
||||
body.put("organizationLabel", organizationLabel);
|
||||
|
||||
return new TemplateResponseValues(standaloneTemplate, body);
|
||||
}
|
||||
|
||||
/**
|
||||
* Function to generate a json file for year <-> publication count mapping.
|
||||
* @param vreq
|
||||
* @param subentities
|
||||
* @param subOrganizationTypesResult
|
||||
*/
|
||||
private String writePublicationsOverTimeJSON(VitroRequest vreq,
|
||||
Set<SubEntity> subentities) {
|
||||
|
||||
Gson json = new Gson();
|
||||
Set<JsonObject> subEntitiesJson = new HashSet<JsonObject>();
|
||||
|
||||
for (SubEntity subentity : subentities) {
|
||||
|
||||
System.out.println("in write json current sub entity " + subentity.getIndividualLabel());
|
||||
|
||||
JsonObject entityJson = new JsonObject(
|
||||
subentity.getIndividualLabel());
|
||||
|
||||
List<List<Integer>> yearPubCount = new ArrayList<List<Integer>>();
|
||||
|
||||
for (Map.Entry<String, Integer> pubEntry : UtilityFunctions
|
||||
.getYearToActivityCount(subentity.getActivities())
|
||||
.entrySet()) {
|
||||
|
||||
List<Integer> currentPubYear = new ArrayList<Integer>();
|
||||
if (pubEntry.getKey().equals(VOConstants.DEFAULT_PUBLICATION_YEAR)) {
|
||||
currentPubYear.add(-1);
|
||||
} else {
|
||||
currentPubYear.add(Integer.parseInt(pubEntry.getKey()));
|
||||
}
|
||||
|
||||
currentPubYear.add(pubEntry.getValue());
|
||||
yearPubCount.add(currentPubYear);
|
||||
}
|
||||
|
||||
entityJson.setYearToActivityCount(yearPubCount);
|
||||
|
||||
entityJson.setOrganizationTypes(subentity.getEntityTypeLabels());
|
||||
|
||||
entityJson.setEntityURI(subentity.getIndividualURI());
|
||||
|
||||
if (subentity.getEntityClass().equals(VOConstants.EntityClassType.PERSON)) {
|
||||
entityJson.setVisMode("PERSON");
|
||||
} else if (subentity.getEntityClass().equals(VOConstants.EntityClassType.ORGANIZATION)) {
|
||||
entityJson.setVisMode("ORGANIZATION");
|
||||
}
|
||||
|
||||
subEntitiesJson.add(entityJson);
|
||||
}
|
||||
return json.toJson(subEntitiesJson);
|
||||
}
|
||||
|
||||
private String getEntityPublicationsPerYearCSVContent(Entity entity) {
|
||||
|
||||
StringBuilder csvFileContent = new StringBuilder();
|
||||
|
||||
csvFileContent.append("Entity Name, Publication Count, Entity Type\n");
|
||||
|
||||
for (SubEntity subEntity : entity.getSubEntities()) {
|
||||
|
||||
csvFileContent.append(StringEscapeUtils.escapeCsv(subEntity.getIndividualLabel()));
|
||||
csvFileContent.append(", ");
|
||||
csvFileContent.append(subEntity.getActivities().size());
|
||||
csvFileContent.append(", ");
|
||||
|
||||
String allTypes = StringUtils.join(subEntity.getEntityTypeLabels(), "; ");
|
||||
|
||||
csvFileContent.append(StringEscapeUtils.escapeCsv(allTypes));
|
||||
csvFileContent.append("\n");
|
||||
}
|
||||
return csvFileContent.toString();
|
||||
}
|
||||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.entitycomparison.cached;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.HashMap;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
|
||||
import org.apache.commons.lang.StringEscapeUtils;
|
||||
import org.apache.commons.lang.StringUtils;
|
||||
import org.apache.commons.logging.Log;
|
||||
|
||||
import com.google.gson.Gson;
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.beans.Portal;
|
||||
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
|
||||
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
|
||||
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
|
||||
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.DataVisualizationController;
|
||||
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.entitycomparison.EntityComparisonUtilityFunctions;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Activity;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.ConstructedModelTracker;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Entity;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.JsonObject;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.SubEntity;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.SelectOnModelUtilities;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.UtilityFunctions;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.VisualizationRequestHandler;
|
||||
|
||||
public class TemporalPublicationVisualizationRequestHandler implements
|
||||
VisualizationRequestHandler {
|
||||
|
||||
@Override
|
||||
public ResponseValues generateStandardVisualization(
|
||||
VitroRequest vitroRequest, Log log, Dataset dataset)
|
||||
throws MalformedQueryParametersException {
|
||||
|
||||
|
||||
String entityURI = vitroRequest
|
||||
.getParameter(VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY);
|
||||
|
||||
if (StringUtils.isBlank(entityURI)) {
|
||||
|
||||
entityURI = EntityComparisonUtilityFunctions
|
||||
.getStaffProvidedOrComputedHighestLevelOrganization(
|
||||
log,
|
||||
dataset,
|
||||
vitroRequest);
|
||||
|
||||
}
|
||||
|
||||
|
||||
System.out.println("current models in the system are");
|
||||
for (Map.Entry<String, Model> entry : ConstructedModelTracker.getAllModels().entrySet()) {
|
||||
System.out.println(entry.getKey() + " -> " + entry.getValue().size());
|
||||
}
|
||||
|
||||
return prepareStandaloneMarkupResponse(vitroRequest, entityURI);
|
||||
}
|
||||
|
||||
private Map<String, String> getSubjectEntityAndGenerateDataResponse(
|
||||
VitroRequest vitroRequest, Log log, Dataset dataset,
|
||||
String subjectEntityURI, EntityComparisonConstants.DataVisMode visMode)
|
||||
throws MalformedQueryParametersException {
|
||||
|
||||
|
||||
Entity organizationEntity = SelectOnModelUtilities
|
||||
.getSubjectOrganizationHierarchy(dataset, subjectEntityURI);
|
||||
|
||||
if (organizationEntity.getSubEntities() == null) {
|
||||
|
||||
if (EntityComparisonConstants.DataVisMode.JSON.equals(visMode)) {
|
||||
return prepareStandaloneDataErrorResponse();
|
||||
} else {
|
||||
return prepareDataErrorResponse();
|
||||
}
|
||||
}
|
||||
|
||||
Map<String, Activity> documentURIForAssociatedPeopleTOVO = new HashMap<String, Activity>();
|
||||
Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
|
||||
|
||||
allDocumentURIToVOs = SelectOnModelUtilities.getPublicationsForAllSubOrganizations(dataset, organizationEntity);
|
||||
|
||||
Entity organizationWithAssociatedPeople = SelectOnModelUtilities
|
||||
.getSubjectOrganizationAssociatedPeople(dataset, subjectEntityURI);
|
||||
|
||||
|
||||
if (organizationWithAssociatedPeople.getSubEntities() != null) {
|
||||
|
||||
documentURIForAssociatedPeopleTOVO = SelectOnModelUtilities
|
||||
.getPublicationsForAssociatedPeople(dataset, organizationWithAssociatedPeople.getSubEntities());
|
||||
|
||||
organizationEntity = EntityComparisonUtilityFunctions.mergeEntityIfShareSameURI(
|
||||
organizationEntity,
|
||||
organizationWithAssociatedPeople);
|
||||
}
|
||||
|
||||
if (allDocumentURIToVOs.isEmpty() && documentURIForAssociatedPeopleTOVO.isEmpty()) {
|
||||
|
||||
if (EntityComparisonConstants.DataVisMode.JSON.equals(visMode)) {
|
||||
return prepareStandaloneDataErrorResponse();
|
||||
} else {
|
||||
return prepareDataErrorResponse();
|
||||
}
|
||||
|
||||
} else {
|
||||
|
||||
if (EntityComparisonConstants.DataVisMode.JSON.equals(visMode)) {
|
||||
return prepareStandaloneDataResponse(vitroRequest, organizationEntity);
|
||||
} else {
|
||||
return prepareDataResponse(organizationEntity);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Provides response when json file containing the publication count over the
|
||||
* years is requested.
|
||||
*
|
||||
* @param entity
|
||||
* @param subentities
|
||||
* @param subOrganizationTypesResult
|
||||
*/
|
||||
private Map<String, String> prepareDataResponse(Entity entity) {
|
||||
|
||||
String entityLabel = entity.getEntityLabel();
|
||||
|
||||
/*
|
||||
* To make sure that null/empty records for entity names do not cause any mischief.
|
||||
* */
|
||||
if (StringUtils.isBlank(entityLabel)) {
|
||||
entityLabel = "no-organization";
|
||||
}
|
||||
|
||||
String outputFileName = UtilityFunctions.slugify(entityLabel)
|
||||
+ "_publications-per-year" + ".csv";
|
||||
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_NAME_KEY,
|
||||
outputFileName);
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
|
||||
getEntityPublicationsPerYearCSVContent(entity));
|
||||
return fileData;
|
||||
}
|
||||
|
||||
private Map<String, String> prepareDataErrorResponse() {
|
||||
|
||||
String outputFileName = "no-organization_publications-per-year.csv";
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_NAME_KEY,
|
||||
outputFileName);
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY, "");
|
||||
return fileData;
|
||||
}
|
||||
|
||||
private Map<String, String> prepareStandaloneDataErrorResponse() {
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
|
||||
"{\"error\" : \"No Publications for this Organization found in VIVO.\"}");
|
||||
return fileData;
|
||||
}
|
||||
|
||||
@Override
|
||||
public Map<String, String> generateDataVisualization(
|
||||
VitroRequest vitroRequest, Log log, Dataset dataset)
|
||||
throws MalformedQueryParametersException {
|
||||
|
||||
String entityURI = vitroRequest
|
||||
.getParameter(VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY);
|
||||
|
||||
/*
|
||||
* This will provide the data in json format mainly used for standalone tmeporal vis.
|
||||
* */
|
||||
if (VisualizationFrameworkConstants.TEMPORAL_GRAPH_JSON_DATA_VIS_MODE
|
||||
.equalsIgnoreCase(vitroRequest.getParameter(
|
||||
VisualizationFrameworkConstants.VIS_MODE_KEY))) {
|
||||
|
||||
if (StringUtils.isNotBlank(entityURI)) {
|
||||
|
||||
return getSubjectEntityAndGenerateDataResponse(
|
||||
vitroRequest,
|
||||
log,
|
||||
dataset,
|
||||
entityURI,
|
||||
EntityComparisonConstants.DataVisMode.JSON);
|
||||
} else {
|
||||
|
||||
return getSubjectEntityAndGenerateDataResponse(
|
||||
vitroRequest,
|
||||
log,
|
||||
dataset,
|
||||
EntityComparisonUtilityFunctions
|
||||
.getStaffProvidedOrComputedHighestLevelOrganization(
|
||||
log,
|
||||
dataset,
|
||||
vitroRequest),
|
||||
EntityComparisonConstants.DataVisMode.JSON);
|
||||
}
|
||||
|
||||
} else {
|
||||
/*
|
||||
* This provides csv download files for the content in the tables.
|
||||
* */
|
||||
|
||||
return getSubjectEntityAndGenerateDataResponse(
|
||||
vitroRequest,
|
||||
log,
|
||||
dataset,
|
||||
entityURI,
|
||||
EntityComparisonConstants.DataVisMode.CSV);
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
@Override
|
||||
public Object generateAjaxVisualization(VitroRequest vitroRequest, Log log,
|
||||
Dataset dataset) throws MalformedQueryParametersException {
|
||||
throw new UnsupportedOperationException("Entity Pub Count does not provide Ajax Response.");
|
||||
}
|
||||
|
||||
private Map<String, String> prepareStandaloneDataResponse(
|
||||
VitroRequest vitroRequest,
|
||||
Entity entity) {
|
||||
|
||||
Map<String, String> fileData = new HashMap<String, String>();
|
||||
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
|
||||
"application/octet-stream");
|
||||
fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
|
||||
writePublicationsOverTimeJSON(vitroRequest,
|
||||
entity.getSubEntities()));
|
||||
return fileData;
|
||||
}
|
||||
|
||||
private TemplateResponseValues prepareStandaloneMarkupResponse(VitroRequest vreq,
|
||||
String entityURI) {
|
||||
|
||||
Portal portal = vreq.getPortal();
|
||||
String standaloneTemplate = "entityComparisonOnPublicationsStandalone.ftl";
|
||||
|
||||
String organizationLabel = EntityComparisonUtilityFunctions
|
||||
.getEntityLabelFromDAO(vreq,
|
||||
entityURI);
|
||||
|
||||
Map<String, Object> body = new HashMap<String, Object>();
|
||||
body.put("portalBean", portal);
|
||||
body.put("title", organizationLabel + " - Temporal Graph Visualization");
|
||||
body.put("organizationURI", entityURI);
|
||||
body.put("organizationLabel", organizationLabel);
|
||||
|
||||
return new TemplateResponseValues(standaloneTemplate, body);
|
||||
}
|
||||
|
||||
/**
|
||||
* Function to generate a json file for year <-> publication count mapping.
|
||||
* @param vreq
|
||||
* @param subentities
|
||||
* @param subOrganizationTypesResult
|
||||
*/
|
||||
private String writePublicationsOverTimeJSON(VitroRequest vreq,
|
||||
Set<SubEntity> subentities) {
|
||||
|
||||
Gson json = new Gson();
|
||||
Set<JsonObject> subEntitiesJson = new HashSet<JsonObject>();
|
||||
|
||||
for (SubEntity subentity : subentities) {
|
||||
|
||||
JsonObject entityJson = new JsonObject(
|
||||
subentity.getIndividualLabel());
|
||||
|
||||
List<List<Integer>> yearPubCount = new ArrayList<List<Integer>>();
|
||||
|
||||
for (Map.Entry<String, Integer> pubEntry : UtilityFunctions
|
||||
.getYearToActivityCount(subentity.getActivities())
|
||||
.entrySet()) {
|
||||
|
||||
List<Integer> currentPubYear = new ArrayList<Integer>();
|
||||
if (pubEntry.getKey().equals(VOConstants.DEFAULT_PUBLICATION_YEAR)) {
|
||||
currentPubYear.add(-1);
|
||||
} else {
|
||||
currentPubYear.add(Integer.parseInt(pubEntry.getKey()));
|
||||
}
|
||||
|
||||
currentPubYear.add(pubEntry.getValue());
|
||||
yearPubCount.add(currentPubYear);
|
||||
}
|
||||
|
||||
entityJson.setYearToActivityCount(yearPubCount);
|
||||
|
||||
entityJson.setOrganizationTypes(subentity.getEntityTypeLabels());
|
||||
|
||||
entityJson.setEntityURI(subentity.getIndividualURI());
|
||||
|
||||
if (subentity.getEntityClass().equals(VOConstants.EntityClassType.PERSON)) {
|
||||
entityJson.setVisMode("PERSON");
|
||||
} else if (subentity.getEntityClass().equals(VOConstants.EntityClassType.ORGANIZATION)) {
|
||||
entityJson.setVisMode("ORGANIZATION");
|
||||
}
|
||||
|
||||
subEntitiesJson.add(entityJson);
|
||||
}
|
||||
return json.toJson(subEntitiesJson);
|
||||
}
|
||||
|
||||
private String getEntityPublicationsPerYearCSVContent(Entity entity) {
|
||||
|
||||
StringBuilder csvFileContent = new StringBuilder();
|
||||
|
||||
csvFileContent.append("Entity Name, Publication Count, Entity Type\n");
|
||||
|
||||
for (SubEntity subEntity : entity.getSubEntities()) {
|
||||
|
||||
csvFileContent.append(StringEscapeUtils.escapeCsv(subEntity.getIndividualLabel()));
|
||||
csvFileContent.append(", ");
|
||||
csvFileContent.append(subEntity.getActivities().size());
|
||||
csvFileContent.append(", ");
|
||||
|
||||
String allTypes = StringUtils.join(subEntity.getEntityTypeLabels(), "; ");
|
||||
|
||||
csvFileContent.append(StringEscapeUtils.escapeCsv(allTypes));
|
||||
csvFileContent.append("\n");
|
||||
}
|
||||
return csvFileContent.toString();
|
||||
}
|
||||
}
|
||||
|
|
@ -1,33 +1,35 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor;
|
||||
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.ModelFactoryInterface;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.OrganizationAssociatedPeopleModelWithTypesFactory;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.OrganizationModelWithTypesFactory;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.OrganizationToGrantsForSubOrganizationsFactory;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.OrganizationToPublicationsForSubOrganizationsFactory;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.PersonToPublicationsFactory;
|
||||
|
||||
public class ModelConstructorUtilities {
|
||||
|
||||
@SuppressWarnings("serial")
|
||||
private static final Map<String, ModelFactoryInterface> modelTypeIdentifierToFactory = new HashMap<String, ModelFactoryInterface>() {{
|
||||
put(PersonToPublicationsModelConstructor.MODEL_TYPE, new PersonToPublicationsFactory());
|
||||
put(OrganizationToPublicationsForSubOrganizationsModelConstructor.MODEL_TYPE, new OrganizationToPublicationsForSubOrganizationsFactory());
|
||||
put(OrganizationToGrantsForSubOrganizationsModelConstructor.MODEL_TYPE, new OrganizationToGrantsForSubOrganizationsFactory());
|
||||
put(OrganizationAssociatedPeopleModelWithTypesConstructor.MODEL_TYPE, new OrganizationAssociatedPeopleModelWithTypesFactory());
|
||||
put(OrganizationModelWithTypesConstructor.MODEL_TYPE, new OrganizationModelWithTypesFactory());
|
||||
}};
|
||||
|
||||
public static Model getOrConstructModel(String uri, String modelType, Dataset dataset)
|
||||
throws MalformedQueryParametersException {
|
||||
return modelTypeIdentifierToFactory.get(modelType).getOrCreateModel(uri, dataset);
|
||||
}
|
||||
}
|
||||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor;
|
||||
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.ModelFactoryInterface;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.OrganizationAssociatedPeopleModelWithTypesFactory;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.OrganizationModelWithTypesFactory;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.OrganizationToGrantsForSubOrganizationsFactory;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.OrganizationToPublicationsForSubOrganizationsFactory;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.PersonToGrantsFactory;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory.PersonToPublicationsFactory;
|
||||
|
||||
public class ModelConstructorUtilities {
|
||||
|
||||
@SuppressWarnings("serial")
|
||||
private static final Map<String, ModelFactoryInterface> modelTypeIdentifierToFactory = new HashMap<String, ModelFactoryInterface>() {{
|
||||
put(PersonToPublicationsModelConstructor.MODEL_TYPE, new PersonToPublicationsFactory());
|
||||
put(PersonToGrantsModelConstructor.MODEL_TYPE, new PersonToGrantsFactory());
|
||||
put(OrganizationToPublicationsForSubOrganizationsModelConstructor.MODEL_TYPE, new OrganizationToPublicationsForSubOrganizationsFactory());
|
||||
put(OrganizationToGrantsForSubOrganizationsModelConstructor.MODEL_TYPE, new OrganizationToGrantsForSubOrganizationsFactory());
|
||||
put(OrganizationAssociatedPeopleModelWithTypesConstructor.MODEL_TYPE, new OrganizationAssociatedPeopleModelWithTypesFactory());
|
||||
put(OrganizationModelWithTypesConstructor.MODEL_TYPE, new OrganizationModelWithTypesFactory());
|
||||
}};
|
||||
|
||||
public static Model getOrConstructModel(String uri, String modelType, Dataset dataset)
|
||||
throws MalformedQueryParametersException {
|
||||
return modelTypeIdentifierToFactory.get(modelType).getOrCreateModel(uri, dataset);
|
||||
}
|
||||
}
|
||||
|
|
@ -1,133 +1,188 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor;
|
||||
|
||||
import org.apache.commons.logging.Log;
|
||||
import org.apache.commons.logging.LogFactory;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.query.Query;
|
||||
import com.hp.hpl.jena.query.QueryExecution;
|
||||
import com.hp.hpl.jena.query.QueryExecutionFactory;
|
||||
import com.hp.hpl.jena.query.QueryFactory;
|
||||
import com.hp.hpl.jena.query.Syntax;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
import com.hp.hpl.jena.rdf.model.ModelFactory;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryConstants;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.ModelConstructor;
|
||||
|
||||
public class OrganizationToGrantsForSubOrganizationsModelConstructor implements ModelConstructor {
|
||||
|
||||
protected static final Syntax SYNTAX = Syntax.syntaxARQ;
|
||||
|
||||
private Dataset dataset;
|
||||
|
||||
public static final String MODEL_TYPE = "ORGANIZATION_TO_GRANTS_FOR_SUBORGANIZATIONS";
|
||||
|
||||
private String organizationURI;
|
||||
|
||||
private Log log = LogFactory.getLog(OrganizationToGrantsForSubOrganizationsModelConstructor.class.getName());
|
||||
|
||||
private long before, after;
|
||||
|
||||
public OrganizationToGrantsForSubOrganizationsModelConstructor(String organizationURI, Dataset dataset) {
|
||||
this.organizationURI = organizationURI;
|
||||
this.dataset = dataset;
|
||||
}
|
||||
|
||||
private String constructOrganizationToGrantsQuery() {
|
||||
|
||||
return ""
|
||||
+ " CONSTRUCT { "
|
||||
+ " <" + organizationURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + organizationURI + "> vivosocnet:lastCachedAt ?now . "
|
||||
+ " <" + organizationURI + "> vivosocnet:hasPersonWithGrant ?Grant . "
|
||||
+ " "
|
||||
+ " ?Grant rdf:type core:Grant . "
|
||||
+ " ?Grant rdfs:label ?grantLabel . "
|
||||
+ " "
|
||||
+ " ?Grant vivosocnet:startDateTimeOnGrant ?startDateTimeValueForGrant . "
|
||||
+ " ?Grant vivosocnet:endDateTimeOnGrant ?endDateTimeValueForGrant . "
|
||||
+ " "
|
||||
+ " ?Grant vivosocnet:startDateTimeOnRole ?startDateTimeValue . "
|
||||
+ " ?Grant vivosocnet:endDateTimeOnRole ?endDateTimeValue . "
|
||||
+ " } "
|
||||
+ " WHERE { "
|
||||
+ " <" + organizationURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + organizationURI + "> core:hasSubOrganization* ?subOrganization . "
|
||||
+ " ?subOrganization core:organizationForPosition ?Position . "
|
||||
+ " ?Position core:positionForPerson ?Person . "
|
||||
+ " ?Person core:hasInvestigatorRole ?Role . "
|
||||
+ " ?Role core:roleIn ?Grant . "
|
||||
+ " ?Grant rdfs:label ?grantLabel . "
|
||||
+ " "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?Grant core:dateTimeInterval ?dateTimeIntervalValueForGrant . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?dateTimeIntervalValueForGrant core:start ?startDateForGrant . "
|
||||
+ " ?startDateForGrant core:dateTime ?startDateTimeValueForGrant . "
|
||||
+ " } "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?dateTimeIntervalValueForGrant core:end ?endDateForGrant . "
|
||||
+ " ?endDateForGrant core:dateTime ?endDateTimeValueForGrant "
|
||||
+ " } "
|
||||
+ " } "
|
||||
+ " "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?Role core:dateTimeInterval ?dateTimeIntervalValue . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?dateTimeIntervalValue core:start ?startDate . "
|
||||
+ " ?startDate core:dateTime ?startDateTimeValue . "
|
||||
+ " } "
|
||||
+ " "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?dateTimeIntervalValue core:end ?endDate . "
|
||||
+ " ?endDate core:dateTime ?endDateTimeValue . "
|
||||
+ " } "
|
||||
+ " } "
|
||||
+ " "
|
||||
+ " LET(?now := afn:now()) "
|
||||
+ " } ";
|
||||
|
||||
}
|
||||
|
||||
private Model executeQuery(String constructQuery) {
|
||||
|
||||
System.out.println("in execute query - org to grants for - " + organizationURI);
|
||||
|
||||
Model constructedModel = ModelFactory.createDefaultModel();
|
||||
|
||||
before = System.currentTimeMillis();
|
||||
log.debug("CONSTRUCT query string : " + constructQuery);
|
||||
|
||||
Query query = null;
|
||||
|
||||
try {
|
||||
query = QueryFactory.create(QueryConstants.getSparqlPrefixQuery()
|
||||
+ constructQuery, SYNTAX);
|
||||
} catch (Throwable th) {
|
||||
log.error("Could not create CONSTRUCT SPARQL query for query "
|
||||
+ "string. " + th.getMessage());
|
||||
log.error(constructQuery);
|
||||
}
|
||||
|
||||
QueryExecution qe = QueryExecutionFactory.create(query, dataset);
|
||||
|
||||
try {
|
||||
qe.execConstruct(constructedModel);
|
||||
} finally {
|
||||
qe.close();
|
||||
}
|
||||
|
||||
after = System.currentTimeMillis();
|
||||
log.debug("Time taken to execute the CONSTRUCT queries is in milliseconds: "
|
||||
+ (after - before));
|
||||
|
||||
return constructedModel;
|
||||
}
|
||||
|
||||
public Model getConstructedModel() throws MalformedQueryParametersException {
|
||||
return executeQuery(constructOrganizationToGrantsQuery());
|
||||
}
|
||||
}
|
||||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor;
|
||||
|
||||
import java.util.HashSet;
|
||||
import java.util.Set;
|
||||
|
||||
import org.apache.commons.logging.Log;
|
||||
import org.apache.commons.logging.LogFactory;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.query.Query;
|
||||
import com.hp.hpl.jena.query.QueryExecution;
|
||||
import com.hp.hpl.jena.query.QueryExecutionFactory;
|
||||
import com.hp.hpl.jena.query.QueryFactory;
|
||||
import com.hp.hpl.jena.query.Syntax;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
import com.hp.hpl.jena.rdf.model.ModelFactory;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryConstants;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.ModelConstructor;
|
||||
|
||||
public class OrganizationToGrantsForSubOrganizationsModelConstructor implements ModelConstructor {
|
||||
|
||||
protected static final Syntax SYNTAX = Syntax.syntaxARQ;
|
||||
|
||||
private Dataset dataset;
|
||||
|
||||
public static final String MODEL_TYPE = "ORGANIZATION_TO_GRANTS_FOR_SUBORGANIZATIONS";
|
||||
|
||||
private String organizationURI;
|
||||
|
||||
private Log log = LogFactory.getLog(OrganizationToGrantsForSubOrganizationsModelConstructor.class.getName());
|
||||
|
||||
private long before, after;
|
||||
|
||||
public OrganizationToGrantsForSubOrganizationsModelConstructor(String organizationURI, Dataset dataset) {
|
||||
this.organizationURI = organizationURI;
|
||||
this.dataset = dataset;
|
||||
}
|
||||
|
||||
private Set<String> constructOrganizationGrantsQueryTemplate(String constructProperty, String roleTypeProperty) {
|
||||
|
||||
Set<String> differentPerspectiveQueries = new HashSet<String>();
|
||||
|
||||
String justGrantsQuery = ""
|
||||
+ " CONSTRUCT { "
|
||||
+ " <" + organizationURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + organizationURI + "> vivosocnet:lastCachedAt ?now . "
|
||||
+ " <" + organizationURI + "> vivosocnet:" + constructProperty + " ?Grant . "
|
||||
+ " "
|
||||
+ " ?Grant rdf:type core:Grant . "
|
||||
+ " ?Grant rdfs:label ?grantLabel . "
|
||||
+ " "
|
||||
+ " } "
|
||||
+ " WHERE { "
|
||||
+ " <" + organizationURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + organizationURI + "> core:hasSubOrganization* ?subOrganization . "
|
||||
+ " ?subOrganization core:organizationForPosition ?Position . "
|
||||
+ " ?Position core:positionForPerson ?Person . "
|
||||
+ " ?Person core:" + roleTypeProperty + " ?Role . "
|
||||
+ " ?Role core:roleIn ?Grant . "
|
||||
+ " ?Grant rdfs:label ?grantLabel . "
|
||||
+ " "
|
||||
+ " LET(?now := afn:now()) "
|
||||
+ " } ";
|
||||
|
||||
String justDateTimeOnGrantsQuery = ""
|
||||
+ " CONSTRUCT { "
|
||||
+ " <" + organizationURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + organizationURI + "> vivosocnet:lastCachedAt ?now . "
|
||||
+ " "
|
||||
+ " ?Grant vivosocnet:startDateTimeOnGrant ?startDateTimeValueForGrant . "
|
||||
// + " ?Grant vivosocnet:endDateTimeOnGrant ?endDateTimeValueForGrant . "
|
||||
+ " "
|
||||
+ " } "
|
||||
+ " WHERE { "
|
||||
+ " <" + organizationURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + organizationURI + "> core:hasSubOrganization* ?subOrganization . "
|
||||
+ " ?subOrganization core:organizationForPosition ?Position . "
|
||||
+ " ?Position core:positionForPerson ?Person . "
|
||||
+ " ?Person core:" + roleTypeProperty + " ?Role . "
|
||||
+ " ?Role core:roleIn ?Grant . "
|
||||
+ " "
|
||||
+ " ?Grant core:dateTimeInterval ?dateTimeIntervalValueForGrant . "
|
||||
// + " OPTIONAL { "
|
||||
+ " ?dateTimeIntervalValueForGrant core:start ?startDateForGrant . "
|
||||
+ " ?startDateForGrant core:dateTime ?startDateTimeValueForGrant . "
|
||||
// + " } "
|
||||
// + " OPTIONAL { "
|
||||
// + " ?dateTimeIntervalValueForGrant core:end ?endDateForGrant . "
|
||||
// + " ?endDateForGrant core:dateTime ?endDateTimeValueForGrant "
|
||||
// + " } "
|
||||
+ " "
|
||||
+ " LET(?now := afn:now()) "
|
||||
+ " } ";
|
||||
|
||||
String justDateTimeOnRolesQuery = ""
|
||||
+ " CONSTRUCT { "
|
||||
+ " <" + organizationURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + organizationURI + "> vivosocnet:lastCachedAt ?now . "
|
||||
+ " "
|
||||
+ " ?Grant vivosocnet:startDateTimeOnRole ?startDateTimeValue . "
|
||||
// + " ?Grant vivosocnet:endDateTimeOnRole ?endDateTimeValue . "
|
||||
+ " } "
|
||||
+ " WHERE { "
|
||||
+ " <" + organizationURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + organizationURI + "> core:hasSubOrganization* ?subOrganization . "
|
||||
+ " ?subOrganization core:organizationForPosition ?Position . "
|
||||
+ " ?Position core:positionForPerson ?Person . "
|
||||
+ " ?Person core:" + roleTypeProperty + " ?Role . "
|
||||
+ " ?Role core:roleIn ?Grant . "
|
||||
+ " "
|
||||
+ " ?Role core:dateTimeInterval ?dateTimeIntervalValue . "
|
||||
// + " OPTIONAL { "
|
||||
+ " ?dateTimeIntervalValue core:start ?startDate . "
|
||||
+ " ?startDate core:dateTime ?startDateTimeValue . "
|
||||
// + " } "
|
||||
// + " "
|
||||
// + " OPTIONAL { "
|
||||
// + " ?dateTimeIntervalValue core:end ?endDate . "
|
||||
// + " ?endDate core:dateTime ?endDateTimeValue . "
|
||||
// + " } "
|
||||
+ " "
|
||||
+ " LET(?now := afn:now()) "
|
||||
+ " } ";
|
||||
|
||||
differentPerspectiveQueries.add(justGrantsQuery);
|
||||
differentPerspectiveQueries.add(justDateTimeOnGrantsQuery);
|
||||
differentPerspectiveQueries.add(justDateTimeOnRolesQuery);
|
||||
|
||||
return differentPerspectiveQueries;
|
||||
}
|
||||
|
||||
private Set<String> constructOrganizationToGrantsQuery() {
|
||||
|
||||
Set<String> differentInvestigatorTypeQueries = new HashSet<String>();
|
||||
|
||||
Set<String> investigatorRoleQuery = constructOrganizationGrantsQueryTemplate("hasInvestigatorWithGrant", "hasInvestigatorRole");
|
||||
Set<String> piRoleQuery = constructOrganizationGrantsQueryTemplate("hasPIWithGrant", "hasPrincipalInvestigatorRole");
|
||||
Set<String> coPIRoleQuery = constructOrganizationGrantsQueryTemplate("hascoPIWithGrant", "hasCo-PrincipalInvestigatorRole");
|
||||
|
||||
differentInvestigatorTypeQueries.addAll(investigatorRoleQuery);
|
||||
differentInvestigatorTypeQueries.addAll(piRoleQuery);
|
||||
differentInvestigatorTypeQueries.addAll(coPIRoleQuery);
|
||||
|
||||
return differentInvestigatorTypeQueries;
|
||||
}
|
||||
|
||||
private Model executeQuery(Set<String> constructQueries) {
|
||||
|
||||
Model constructedModel = ModelFactory.createDefaultModel();
|
||||
|
||||
before = System.currentTimeMillis();
|
||||
log.debug("CONSTRUCT query string : " + constructQueries);
|
||||
|
||||
for (String currentQuery : constructQueries) {
|
||||
|
||||
Query query = null;
|
||||
|
||||
try {
|
||||
query = QueryFactory.create(QueryConstants.getSparqlPrefixQuery() + currentQuery, SYNTAX);
|
||||
} catch (Throwable th) {
|
||||
log.error("Could not create CONSTRUCT SPARQL query for query "
|
||||
+ "string. " + th.getMessage());
|
||||
log.error(currentQuery);
|
||||
}
|
||||
|
||||
QueryExecution qe = QueryExecutionFactory.create(query, dataset);
|
||||
|
||||
try {
|
||||
qe.execConstruct(constructedModel);
|
||||
} finally {
|
||||
qe.close();
|
||||
}
|
||||
}
|
||||
|
||||
after = System.currentTimeMillis();
|
||||
log.debug("Time taken to execute the CONSTRUCT queries is in milliseconds: "
|
||||
+ (after - before));
|
||||
|
||||
return constructedModel;
|
||||
}
|
||||
|
||||
public Model getConstructedModel() throws MalformedQueryParametersException {
|
||||
return executeQuery(constructOrganizationToGrantsQuery());
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,171 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor;
|
||||
|
||||
import java.util.HashSet;
|
||||
import java.util.Set;
|
||||
|
||||
import org.apache.commons.logging.Log;
|
||||
import org.apache.commons.logging.LogFactory;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.query.Query;
|
||||
import com.hp.hpl.jena.query.QueryExecution;
|
||||
import com.hp.hpl.jena.query.QueryExecutionFactory;
|
||||
import com.hp.hpl.jena.query.QueryFactory;
|
||||
import com.hp.hpl.jena.query.Syntax;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
import com.hp.hpl.jena.rdf.model.ModelFactory;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryConstants;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.ModelConstructor;
|
||||
|
||||
public class PersonToGrantsModelConstructor implements ModelConstructor {
|
||||
|
||||
protected static final Syntax SYNTAX = Syntax.syntaxARQ;
|
||||
|
||||
private Dataset dataset;
|
||||
|
||||
public static final String MODEL_TYPE = "PERSON_TO_GRANTS";
|
||||
|
||||
private String personURI;
|
||||
|
||||
private Log log = LogFactory.getLog(PersonToGrantsModelConstructor.class.getName());
|
||||
|
||||
private long before, after;
|
||||
|
||||
public PersonToGrantsModelConstructor(String personURI, Dataset dataset) {
|
||||
this.personURI = personURI;
|
||||
this.dataset = dataset;
|
||||
}
|
||||
|
||||
private Set<String> constructPersonGrantsQueryTemplate(String constructProperty, String roleTypeProperty) {
|
||||
|
||||
Set<String> differentPerspectiveQueries = new HashSet<String>();
|
||||
|
||||
String justGrantsQuery = ""
|
||||
+ " CONSTRUCT { "
|
||||
+ " <" + personURI + "> vivosocnet:lastCachedAt ?now . "
|
||||
+ " <" + personURI + "> vivosocnet:" + constructProperty + " ?Grant . "
|
||||
+ " "
|
||||
+ " ?Grant rdf:type core:Grant . "
|
||||
+ " ?Grant rdfs:label ?grantLabel . "
|
||||
+ " "
|
||||
+ " } "
|
||||
+ " WHERE { "
|
||||
+ " ?Person core:" + roleTypeProperty + " ?Role . "
|
||||
+ " ?Role core:roleIn ?Grant . "
|
||||
+ " ?Grant rdfs:label ?grantLabel . "
|
||||
+ " "
|
||||
+ " LET(?now := afn:now()) "
|
||||
+ " } ";
|
||||
|
||||
String justDateTimeOnGrantsQuery = ""
|
||||
+ " CONSTRUCT { "
|
||||
+ " <" + personURI + "> vivosocnet:lastCachedAt ?now . "
|
||||
+ " ?Grant vivosocnet:startDateTimeOnGrant ?startDateTimeValueForGrant . "
|
||||
// + " ?Grant vivosocnet:endDateTimeOnGrant ?endDateTimeValueForGrant . "
|
||||
+ " "
|
||||
+ " } "
|
||||
+ " WHERE { "
|
||||
+ " ?Person core:" + roleTypeProperty + " ?Role . "
|
||||
+ " ?Role core:roleIn ?Grant . "
|
||||
+ " "
|
||||
+ " ?Grant core:dateTimeInterval ?dateTimeIntervalValueForGrant . "
|
||||
// + " OPTIONAL { "
|
||||
+ " ?dateTimeIntervalValueForGrant core:start ?startDateForGrant . "
|
||||
+ " ?startDateForGrant core:dateTime ?startDateTimeValueForGrant . "
|
||||
// + " } "
|
||||
// + " OPTIONAL { "
|
||||
// + " ?dateTimeIntervalValueForGrant core:end ?endDateForGrant . "
|
||||
// + " ?endDateForGrant core:dateTime ?endDateTimeValueForGrant "
|
||||
// + " } "
|
||||
+ " "
|
||||
+ " LET(?now := afn:now()) "
|
||||
+ " } ";
|
||||
|
||||
String justDateTimeOnRolesQuery = ""
|
||||
+ " CONSTRUCT { "
|
||||
+ " <" + personURI + "> vivosocnet:lastCachedAt ?now . "
|
||||
+ " ?Grant vivosocnet:startDateTimeOnRole ?startDateTimeValue . "
|
||||
// + " ?Grant vivosocnet:endDateTimeOnRole ?endDateTimeValue . "
|
||||
+ " } "
|
||||
+ " WHERE { "
|
||||
+ " ?Person core:" + roleTypeProperty + " ?Role . "
|
||||
+ " ?Role core:roleIn ?Grant . "
|
||||
+ " "
|
||||
+ " ?Role core:dateTimeInterval ?dateTimeIntervalValue . "
|
||||
// + " OPTIONAL { "
|
||||
+ " ?dateTimeIntervalValue core:start ?startDate . "
|
||||
+ " ?startDate core:dateTime ?startDateTimeValue . "
|
||||
// + " } "
|
||||
// + " "
|
||||
// + " OPTIONAL { "
|
||||
// + " ?dateTimeIntervalValue core:end ?endDate . "
|
||||
// + " ?endDate core:dateTime ?endDateTimeValue . "
|
||||
// + " } "
|
||||
+ " "
|
||||
+ " LET(?now := afn:now()) "
|
||||
+ " } ";
|
||||
|
||||
differentPerspectiveQueries.add(justGrantsQuery);
|
||||
differentPerspectiveQueries.add(justDateTimeOnGrantsQuery);
|
||||
differentPerspectiveQueries.add(justDateTimeOnRolesQuery);
|
||||
|
||||
return differentPerspectiveQueries;
|
||||
}
|
||||
|
||||
private Set<String> constructPersonToGrantsQuery() {
|
||||
|
||||
Set<String> differentInvestigatorTypeQueries = new HashSet<String>();
|
||||
|
||||
Set<String> investigatorRoleQuery = constructPersonGrantsQueryTemplate("hasGrantAsAnInvestigator", "hasInvestigatorRole");
|
||||
Set<String> piRoleQuery = constructPersonGrantsQueryTemplate("hasGrantAsPI", "hasPrincipalInvestigatorRole");
|
||||
Set<String> coPIRoleQuery = constructPersonGrantsQueryTemplate("hasGrantAsCoPI", "hasCo-PrincipalInvestigatorRole");
|
||||
|
||||
differentInvestigatorTypeQueries.addAll(investigatorRoleQuery);
|
||||
differentInvestigatorTypeQueries.addAll(piRoleQuery);
|
||||
differentInvestigatorTypeQueries.addAll(coPIRoleQuery);
|
||||
|
||||
return differentInvestigatorTypeQueries;
|
||||
}
|
||||
|
||||
private Model executeQuery(Set<String> constructQueries) {
|
||||
|
||||
Model constructedModel = ModelFactory.createDefaultModel();
|
||||
|
||||
before = System.currentTimeMillis();
|
||||
log.debug("CONSTRUCT query string : " + constructQueries);
|
||||
|
||||
for (String currentQuery : constructQueries) {
|
||||
|
||||
Query query = null;
|
||||
|
||||
try {
|
||||
query = QueryFactory.create(QueryConstants.getSparqlPrefixQuery() + currentQuery, SYNTAX);
|
||||
} catch (Throwable th) {
|
||||
log.error("Could not create CONSTRUCT SPARQL query for query "
|
||||
+ "string. " + th.getMessage());
|
||||
log.error(currentQuery);
|
||||
}
|
||||
|
||||
QueryExecution qe = QueryExecutionFactory.create(query, dataset);
|
||||
|
||||
try {
|
||||
qe.execConstruct(constructedModel);
|
||||
} finally {
|
||||
qe.close();
|
||||
}
|
||||
}
|
||||
|
||||
after = System.currentTimeMillis();
|
||||
log.debug("Time taken to execute the CONSTRUCT queries is in milliseconds: "
|
||||
+ (after - before));
|
||||
|
||||
return constructedModel;
|
||||
}
|
||||
|
||||
public Model getConstructedModel() throws MalformedQueryParametersException {
|
||||
return executeQuery(constructPersonToGrantsQuery());
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,43 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.factory;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.PersonToGrantsModelConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.ConstructedModelTracker;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.ModelConstructor;
|
||||
|
||||
public class PersonToGrantsFactory implements ModelFactoryInterface {
|
||||
|
||||
@Override
|
||||
public Model getOrCreateModel(String uri, Dataset dataset)
|
||||
throws MalformedQueryParametersException {
|
||||
|
||||
Model candidateModel = ConstructedModelTracker.getModel(
|
||||
ConstructedModelTracker
|
||||
.generateModelIdentifier(
|
||||
uri,
|
||||
PersonToGrantsModelConstructor.MODEL_TYPE));
|
||||
|
||||
if (candidateModel != null) {
|
||||
|
||||
return candidateModel;
|
||||
|
||||
} else {
|
||||
|
||||
ModelConstructor model = new PersonToGrantsModelConstructor(uri, dataset);
|
||||
|
||||
Model constructedModel = model.getConstructedModel();
|
||||
ConstructedModelTracker.trackModel(
|
||||
ConstructedModelTracker
|
||||
.generateModelIdentifier(
|
||||
uri,
|
||||
PersonToGrantsModelConstructor.MODEL_TYPE),
|
||||
constructedModel);
|
||||
|
||||
return constructedModel;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
@ -1,396 +1,481 @@
|
|||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils;
|
||||
|
||||
import java.util.Collection;
|
||||
import java.util.HashMap;
|
||||
import java.util.HashSet;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
|
||||
import org.apache.commons.lang.StringUtils;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.query.QuerySolution;
|
||||
import com.hp.hpl.jena.query.ResultSet;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
import com.hp.hpl.jena.rdf.model.RDFNode;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.ModelConstructorUtilities;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationAssociatedPeopleModelWithTypesConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationModelWithTypesConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationToGrantsForSubOrganizationsModelConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationToPublicationsForSubOrganizationsModelConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.PersonToPublicationsModelConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Activity;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Entity;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.SubEntity;
|
||||
|
||||
public class SelectOnModelUtilities {
|
||||
|
||||
public static Entity getSubjectOrganizationHierarchy(Dataset dataset,
|
||||
String subjectEntityURI) throws MalformedQueryParametersException {
|
||||
Model organizationModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
null,
|
||||
OrganizationModelWithTypesConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("organizationLabel", QueryFieldLabels.ORGANIZATION_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("subOrganization", QueryFieldLabels.SUBORGANIZATION_URL);
|
||||
fieldLabelToOutputFieldLabel.put("subOrganizationLabel", QueryFieldLabels.SUBORGANIZATION_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("subOrganizationTypeLabel", QueryFieldLabels.SUBORGANIZATION_TYPE_LABEL);
|
||||
|
||||
String whereClause = ""
|
||||
+ " <" + subjectEntityURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + subjectEntityURI + "> core:hasSubOrganization ?subOrganization . "
|
||||
+ " ?subOrganization rdfs:label ?subOrganizationLabel . "
|
||||
+ " ?subOrganization rdf:type ?subOrgType . "
|
||||
+ " ?subOrgType rdfs:label ?subOrganizationTypeLabel . ";
|
||||
|
||||
QueryRunner<ResultSet> subOrganizationsWithTypesQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
organizationModel);
|
||||
|
||||
return getEntityWithSubOrganizations(subjectEntityURI,
|
||||
subOrganizationsWithTypesQuery.getQueryResult());
|
||||
}
|
||||
|
||||
private static Entity getEntityWithSubOrganizations(String subjectEntityURI, ResultSet queryResult) {
|
||||
|
||||
Entity entity = new Entity(subjectEntityURI);
|
||||
Map<String, SubEntity> subOrganizationURIToVO = new HashMap<String, SubEntity>();
|
||||
|
||||
while (queryResult.hasNext()) {
|
||||
|
||||
QuerySolution solution = queryResult.nextSolution();
|
||||
|
||||
if (StringUtils.isEmpty(entity.getEntityLabel())) {
|
||||
|
||||
RDFNode organizationLabelNode = solution.get(QueryFieldLabels.ORGANIZATION_LABEL);
|
||||
if (organizationLabelNode != null) {
|
||||
entity.setIndividualLabel(organizationLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
RDFNode subOrganizationNode = solution.get(QueryFieldLabels.SUBORGANIZATION_URL);
|
||||
|
||||
SubEntity subEntity;
|
||||
|
||||
if (subOrganizationURIToVO.containsKey(subOrganizationNode.toString())) {
|
||||
|
||||
subEntity = subOrganizationURIToVO.get(subOrganizationNode.toString());
|
||||
|
||||
} else {
|
||||
|
||||
subEntity = new SubEntity(subOrganizationNode.toString());
|
||||
|
||||
subEntity.setEntityClass(VOConstants.EntityClassType.ORGANIZATION);
|
||||
|
||||
subOrganizationURIToVO.put(subOrganizationNode.toString(), subEntity);
|
||||
|
||||
RDFNode subOrganizationLabelNode = solution.get(QueryFieldLabels.SUBORGANIZATION_LABEL);
|
||||
if (subOrganizationLabelNode != null) {
|
||||
subEntity.setIndividualLabel(subOrganizationLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
RDFNode subOrganizationTypeLabelNode = solution.get(QueryFieldLabels.SUBORGANIZATION_TYPE_LABEL);
|
||||
if (subOrganizationTypeLabelNode != null) {
|
||||
subEntity.addEntityTypeLabel(subOrganizationTypeLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
entity.addSubEntitities(subOrganizationURIToVO.values());
|
||||
|
||||
return entity;
|
||||
}
|
||||
|
||||
public static Entity getSubjectOrganizationAssociatedPeople(Dataset dataset,
|
||||
String subjectEntityURI) throws MalformedQueryParametersException {
|
||||
Model associatedPeopleModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
subjectEntityURI,
|
||||
OrganizationAssociatedPeopleModelWithTypesConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("organizationLabel", QueryFieldLabels.ORGANIZATION_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("person", QueryFieldLabels.PERSON_URL);
|
||||
fieldLabelToOutputFieldLabel.put("personLabel", QueryFieldLabels.PERSON_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("personTypeLabel", QueryFieldLabels.PERSON_TYPE_LABEL);
|
||||
|
||||
String whereClause = ""
|
||||
+ " <" + subjectEntityURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + subjectEntityURI + "> vivosocnet:hasPersonWithActivity ?person . "
|
||||
+ " ?person rdfs:label ?personLabel . "
|
||||
+ " ?person rdf:type ?personType . "
|
||||
+ " ?personType rdfs:label ?personTypeLabel . ";
|
||||
|
||||
QueryRunner<ResultSet> associatedPeopleWithTypesQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
associatedPeopleModel);
|
||||
|
||||
return getEntityWithAssociatedPeopleSubEntitities(subjectEntityURI, associatedPeopleWithTypesQuery.getQueryResult());
|
||||
}
|
||||
|
||||
private static Entity getEntityWithAssociatedPeopleSubEntitities(
|
||||
String subjectEntityURI, ResultSet queryResult) {
|
||||
|
||||
Entity entity = new Entity(subjectEntityURI);
|
||||
Map<String, SubEntity> associatedPeopleURIToVO = new HashMap<String, SubEntity>();
|
||||
|
||||
while (queryResult.hasNext()) {
|
||||
|
||||
QuerySolution solution = queryResult.nextSolution();
|
||||
|
||||
if (StringUtils.isEmpty(entity.getEntityLabel())) {
|
||||
|
||||
RDFNode organizationLabelNode = solution.get(QueryFieldLabels.ORGANIZATION_LABEL);
|
||||
if (organizationLabelNode != null) {
|
||||
entity.setIndividualLabel(organizationLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
RDFNode personNode = solution.get(QueryFieldLabels.PERSON_URL);
|
||||
|
||||
SubEntity subEntity;
|
||||
|
||||
if (associatedPeopleURIToVO.containsKey(personNode.toString())) {
|
||||
|
||||
subEntity = associatedPeopleURIToVO.get(personNode.toString());
|
||||
|
||||
} else {
|
||||
|
||||
subEntity = new SubEntity(personNode.toString());
|
||||
subEntity.setEntityClass(VOConstants.EntityClassType.PERSON);
|
||||
associatedPeopleURIToVO.put(personNode.toString(), subEntity);
|
||||
|
||||
RDFNode personLabelNode = solution.get(QueryFieldLabels.PERSON_LABEL);
|
||||
if (personLabelNode != null) {
|
||||
subEntity.setIndividualLabel(personLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
RDFNode personTypeLabelNode = solution.get(QueryFieldLabels.PERSON_TYPE_LABEL);
|
||||
if (personTypeLabelNode != null) {
|
||||
subEntity.addEntityTypeLabel(personTypeLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
entity.addSubEntitities(associatedPeopleURIToVO.values());
|
||||
return entity;
|
||||
}
|
||||
|
||||
public static Map<String, Activity> getPublicationsForAllSubOrganizations(
|
||||
Dataset dataset, Entity organizationEntity)
|
||||
throws MalformedQueryParametersException {
|
||||
Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
|
||||
|
||||
for (SubEntity subOrganization : organizationEntity.getSubEntities()) {
|
||||
|
||||
Model subOrganizationPublicationsModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
subOrganization.getIndividualURI(),
|
||||
OrganizationToPublicationsForSubOrganizationsModelConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
System.out.println("getting publications for " + subOrganization.getIndividualLabel());
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("document", QueryFieldLabels.DOCUMENT_URL);
|
||||
fieldLabelToOutputFieldLabel.put("documentLabel", QueryFieldLabels.DOCUMENT_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("documentPublicationDate", QueryFieldLabels.DOCUMENT_PUBLICATION_DATE);
|
||||
|
||||
String whereClause = ""
|
||||
+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasPersonWithPublication ?document . "
|
||||
+ " ?document rdfs:label ?documentLabel . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?document core:dateTimeValue ?dateTimeValue . "
|
||||
+ " ?dateTimeValue core:dateTime ?documentPublicationDate } . ";
|
||||
|
||||
QueryRunner<ResultSet> subOrganizationPublicationsQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
subOrganizationPublicationsModel);
|
||||
|
||||
subOrganization.addActivities(getPublicationForEntity(
|
||||
subOrganizationPublicationsQuery.getQueryResult(),
|
||||
allDocumentURIToVOs));
|
||||
|
||||
}
|
||||
return allDocumentURIToVOs;
|
||||
}
|
||||
|
||||
private static Collection<Activity> getPublicationForEntity(
|
||||
ResultSet queryResult,
|
||||
Map<String, Activity> allDocumentURIToVOs) {
|
||||
|
||||
Set<Activity> currentEntityPublications = new HashSet<Activity>();
|
||||
|
||||
while (queryResult.hasNext()) {
|
||||
|
||||
QuerySolution solution = queryResult.nextSolution();
|
||||
|
||||
RDFNode documentNode = solution.get(QueryFieldLabels.DOCUMENT_URL);
|
||||
Activity biboDocument;
|
||||
|
||||
if (allDocumentURIToVOs.containsKey(documentNode.toString())) {
|
||||
biboDocument = allDocumentURIToVOs.get(documentNode.toString());
|
||||
|
||||
} else {
|
||||
|
||||
biboDocument = new Activity(documentNode.toString());
|
||||
allDocumentURIToVOs.put(documentNode.toString(), biboDocument);
|
||||
|
||||
RDFNode publicationDateNode = solution.get(QueryFieldLabels
|
||||
.DOCUMENT_PUBLICATION_DATE);
|
||||
if (publicationDateNode != null) {
|
||||
biboDocument.setActivityDate(publicationDateNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
currentEntityPublications.add(biboDocument);
|
||||
|
||||
}
|
||||
|
||||
return currentEntityPublications;
|
||||
}
|
||||
|
||||
|
||||
private static Collection<Activity> getGrantForEntity(
|
||||
ResultSet queryResult,
|
||||
Map<String, Activity> allGrantURIToVO) {
|
||||
|
||||
Set<Activity> currentEntityGrants = new HashSet<Activity>();
|
||||
|
||||
while (queryResult.hasNext()) {
|
||||
|
||||
QuerySolution solution = queryResult.nextSolution();
|
||||
|
||||
RDFNode grantNode = solution.get(QueryFieldLabels.GRANT_URL);
|
||||
Activity coreGrant;
|
||||
|
||||
if (allGrantURIToVO.containsKey(grantNode.toString())) {
|
||||
coreGrant = allGrantURIToVO.get(grantNode.toString());
|
||||
|
||||
} else {
|
||||
|
||||
coreGrant = new Activity(grantNode.toString());
|
||||
allGrantURIToVO.put(grantNode.toString(), coreGrant);
|
||||
|
||||
RDFNode grantStartDateNode = solution.get(QueryFieldLabels.ROLE_START_DATE);
|
||||
|
||||
if (grantStartDateNode != null) {
|
||||
coreGrant.setActivityDate(grantStartDateNode.toString());
|
||||
} else {
|
||||
grantStartDateNode = solution
|
||||
.get(QueryFieldLabels.GRANT_START_DATE);
|
||||
if (grantStartDateNode != null) {
|
||||
coreGrant.setActivityDate(grantStartDateNode.toString());
|
||||
}
|
||||
}
|
||||
}
|
||||
currentEntityGrants.add(coreGrant);
|
||||
}
|
||||
return currentEntityGrants;
|
||||
}
|
||||
|
||||
public static Map<String, Activity> getGrantsForAllSubOrganizations(
|
||||
Dataset dataset, Entity organizationEntity)
|
||||
throws MalformedQueryParametersException {
|
||||
Map<String, Activity> allGrantURIToVO = new HashMap<String, Activity>();
|
||||
|
||||
for (SubEntity subOrganization : organizationEntity.getSubEntities()) {
|
||||
|
||||
Model subOrganizationGrantsModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
subOrganization.getIndividualURI(),
|
||||
OrganizationToGrantsForSubOrganizationsModelConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
System.out.println("getting grants for " + subOrganization.getIndividualLabel());
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("grant", QueryFieldLabels.GRANT_URL);
|
||||
fieldLabelToOutputFieldLabel.put("grantLabel", QueryFieldLabels.GRANT_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("grantStartDate", QueryFieldLabels.GRANT_START_DATE);
|
||||
fieldLabelToOutputFieldLabel.put("roleStartDate", QueryFieldLabels.ROLE_START_DATE);
|
||||
|
||||
String whereClause = ""
|
||||
+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasPersonWithGrant ?grant . "
|
||||
+ " ?grant rdfs:label ?grantLabel . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . ";
|
||||
|
||||
QueryRunner<ResultSet> subOrganizationGrantsQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
subOrganizationGrantsModel);
|
||||
|
||||
subOrganization.addActivities(getGrantForEntity(
|
||||
subOrganizationGrantsQuery.getQueryResult(),
|
||||
allGrantURIToVO));
|
||||
|
||||
}
|
||||
return allGrantURIToVO;
|
||||
}
|
||||
|
||||
public static Map<String, Activity> getPublicationsForAssociatedPeople(
|
||||
Dataset dataset, Collection<SubEntity> people)
|
||||
throws MalformedQueryParametersException {
|
||||
Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
|
||||
|
||||
for (SubEntity person : people) {
|
||||
|
||||
Model personPublicationsModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
person.getIndividualURI(),
|
||||
PersonToPublicationsModelConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
System.out.println("getting publications for " + person.getIndividualLabel());
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("document", QueryFieldLabels.DOCUMENT_URL);
|
||||
fieldLabelToOutputFieldLabel.put("documentLabel", QueryFieldLabels.DOCUMENT_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("documentPublicationDate", QueryFieldLabels.DOCUMENT_PUBLICATION_DATE);
|
||||
|
||||
String whereClause = ""
|
||||
+ " <" + person.getIndividualURI() + "> vivosocnet:hasPublication ?document . "
|
||||
+ " ?document rdfs:label ?documentLabel . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?document core:dateTimeValue ?dateTimeValue . "
|
||||
+ " ?dateTimeValue core:dateTime ?documentPublicationDate } . ";
|
||||
|
||||
QueryRunner<ResultSet> personPublicationsQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
personPublicationsModel);
|
||||
|
||||
person.addActivities(getPublicationForEntity(
|
||||
personPublicationsQuery.getQueryResult(),
|
||||
allDocumentURIToVOs));
|
||||
|
||||
}
|
||||
return allDocumentURIToVOs;
|
||||
}
|
||||
|
||||
}
|
||||
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
|
||||
package edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils;
|
||||
|
||||
import java.util.Collection;
|
||||
import java.util.HashMap;
|
||||
import java.util.HashSet;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
|
||||
import org.apache.commons.lang.StringUtils;
|
||||
|
||||
import com.hp.hpl.jena.query.Dataset;
|
||||
import com.hp.hpl.jena.query.QuerySolution;
|
||||
import com.hp.hpl.jena.query.ResultSet;
|
||||
import com.hp.hpl.jena.rdf.model.Model;
|
||||
import com.hp.hpl.jena.rdf.model.RDFNode;
|
||||
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.ModelConstructorUtilities;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationAssociatedPeopleModelWithTypesConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationModelWithTypesConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationToGrantsForSubOrganizationsModelConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.OrganizationToPublicationsForSubOrganizationsModelConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.PersonToGrantsModelConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.modelconstructor.PersonToPublicationsModelConstructor;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Activity;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Entity;
|
||||
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.SubEntity;
|
||||
|
||||
public class SelectOnModelUtilities {
|
||||
|
||||
public static Entity getSubjectOrganizationHierarchy(Dataset dataset,
|
||||
String subjectEntityURI) throws MalformedQueryParametersException {
|
||||
Model organizationModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
null,
|
||||
OrganizationModelWithTypesConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("organizationLabel", QueryFieldLabels.ORGANIZATION_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("subOrganization", QueryFieldLabels.SUBORGANIZATION_URL);
|
||||
fieldLabelToOutputFieldLabel.put("subOrganizationLabel", QueryFieldLabels.SUBORGANIZATION_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("subOrganizationTypeLabel", QueryFieldLabels.SUBORGANIZATION_TYPE_LABEL);
|
||||
|
||||
String whereClause = ""
|
||||
+ " <" + subjectEntityURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + subjectEntityURI + "> core:hasSubOrganization ?subOrganization . "
|
||||
+ " ?subOrganization rdfs:label ?subOrganizationLabel . "
|
||||
+ " ?subOrganization rdf:type ?subOrgType . "
|
||||
+ " ?subOrgType rdfs:label ?subOrganizationTypeLabel . ";
|
||||
|
||||
QueryRunner<ResultSet> subOrganizationsWithTypesQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
organizationModel);
|
||||
|
||||
return getEntityWithSubOrganizations(subjectEntityURI,
|
||||
subOrganizationsWithTypesQuery.getQueryResult());
|
||||
}
|
||||
|
||||
private static Entity getEntityWithSubOrganizations(String subjectEntityURI, ResultSet queryResult) {
|
||||
|
||||
Entity entity = new Entity(subjectEntityURI);
|
||||
Map<String, SubEntity> subOrganizationURIToVO = new HashMap<String, SubEntity>();
|
||||
|
||||
while (queryResult.hasNext()) {
|
||||
|
||||
QuerySolution solution = queryResult.nextSolution();
|
||||
|
||||
if (StringUtils.isEmpty(entity.getEntityLabel())) {
|
||||
|
||||
RDFNode organizationLabelNode = solution.get(QueryFieldLabels.ORGANIZATION_LABEL);
|
||||
if (organizationLabelNode != null) {
|
||||
entity.setIndividualLabel(organizationLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
RDFNode subOrganizationNode = solution.get(QueryFieldLabels.SUBORGANIZATION_URL);
|
||||
|
||||
SubEntity subEntity;
|
||||
|
||||
if (subOrganizationURIToVO.containsKey(subOrganizationNode.toString())) {
|
||||
|
||||
subEntity = subOrganizationURIToVO.get(subOrganizationNode.toString());
|
||||
|
||||
} else {
|
||||
|
||||
subEntity = new SubEntity(subOrganizationNode.toString());
|
||||
|
||||
subEntity.setEntityClass(VOConstants.EntityClassType.ORGANIZATION);
|
||||
|
||||
subOrganizationURIToVO.put(subOrganizationNode.toString(), subEntity);
|
||||
|
||||
RDFNode subOrganizationLabelNode = solution.get(QueryFieldLabels.SUBORGANIZATION_LABEL);
|
||||
if (subOrganizationLabelNode != null) {
|
||||
subEntity.setIndividualLabel(subOrganizationLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
RDFNode subOrganizationTypeLabelNode = solution.get(QueryFieldLabels.SUBORGANIZATION_TYPE_LABEL);
|
||||
if (subOrganizationTypeLabelNode != null) {
|
||||
subEntity.addEntityTypeLabel(subOrganizationTypeLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
entity.addSubEntitities(subOrganizationURIToVO.values());
|
||||
|
||||
return entity;
|
||||
}
|
||||
|
||||
public static Entity getSubjectOrganizationAssociatedPeople(Dataset dataset,
|
||||
String subjectEntityURI) throws MalformedQueryParametersException {
|
||||
Model associatedPeopleModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
subjectEntityURI,
|
||||
OrganizationAssociatedPeopleModelWithTypesConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("organizationLabel", QueryFieldLabels.ORGANIZATION_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("person", QueryFieldLabels.PERSON_URL);
|
||||
fieldLabelToOutputFieldLabel.put("personLabel", QueryFieldLabels.PERSON_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("personTypeLabel", QueryFieldLabels.PERSON_TYPE_LABEL);
|
||||
|
||||
String whereClause = ""
|
||||
+ " <" + subjectEntityURI + "> rdfs:label ?organizationLabel . "
|
||||
+ " <" + subjectEntityURI + "> vivosocnet:hasPersonWithActivity ?person . "
|
||||
+ " ?person rdfs:label ?personLabel . "
|
||||
+ " ?person rdf:type ?personType . "
|
||||
+ " ?personType rdfs:label ?personTypeLabel . ";
|
||||
|
||||
QueryRunner<ResultSet> associatedPeopleWithTypesQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
associatedPeopleModel);
|
||||
|
||||
return getEntityWithAssociatedPeopleSubEntitities(subjectEntityURI, associatedPeopleWithTypesQuery.getQueryResult());
|
||||
}
|
||||
|
||||
private static Entity getEntityWithAssociatedPeopleSubEntitities(
|
||||
String subjectEntityURI, ResultSet queryResult) {
|
||||
|
||||
Entity entity = new Entity(subjectEntityURI);
|
||||
Map<String, SubEntity> associatedPeopleURIToVO = new HashMap<String, SubEntity>();
|
||||
|
||||
while (queryResult.hasNext()) {
|
||||
|
||||
QuerySolution solution = queryResult.nextSolution();
|
||||
|
||||
if (StringUtils.isEmpty(entity.getEntityLabel())) {
|
||||
|
||||
RDFNode organizationLabelNode = solution.get(QueryFieldLabels.ORGANIZATION_LABEL);
|
||||
if (organizationLabelNode != null) {
|
||||
entity.setIndividualLabel(organizationLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
RDFNode personNode = solution.get(QueryFieldLabels.PERSON_URL);
|
||||
|
||||
SubEntity subEntity;
|
||||
|
||||
if (associatedPeopleURIToVO.containsKey(personNode.toString())) {
|
||||
|
||||
subEntity = associatedPeopleURIToVO.get(personNode.toString());
|
||||
|
||||
} else {
|
||||
|
||||
subEntity = new SubEntity(personNode.toString());
|
||||
subEntity.setEntityClass(VOConstants.EntityClassType.PERSON);
|
||||
associatedPeopleURIToVO.put(personNode.toString(), subEntity);
|
||||
|
||||
RDFNode personLabelNode = solution.get(QueryFieldLabels.PERSON_LABEL);
|
||||
if (personLabelNode != null) {
|
||||
subEntity.setIndividualLabel(personLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
RDFNode personTypeLabelNode = solution.get(QueryFieldLabels.PERSON_TYPE_LABEL);
|
||||
if (personTypeLabelNode != null) {
|
||||
subEntity.addEntityTypeLabel(personTypeLabelNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
entity.addSubEntitities(associatedPeopleURIToVO.values());
|
||||
return entity;
|
||||
}
|
||||
|
||||
public static Map<String, Activity> getPublicationsForAllSubOrganizations(
|
||||
Dataset dataset, Entity organizationEntity)
|
||||
throws MalformedQueryParametersException {
|
||||
Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
|
||||
|
||||
for (SubEntity subOrganization : organizationEntity.getSubEntities()) {
|
||||
|
||||
Model subOrganizationPublicationsModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
subOrganization.getIndividualURI(),
|
||||
OrganizationToPublicationsForSubOrganizationsModelConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
System.out.println("getting publications for " + subOrganization.getIndividualLabel());
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("document", QueryFieldLabels.DOCUMENT_URL);
|
||||
fieldLabelToOutputFieldLabel.put("documentLabel", QueryFieldLabels.DOCUMENT_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("documentPublicationDate", QueryFieldLabels.DOCUMENT_PUBLICATION_DATE);
|
||||
|
||||
String whereClause = ""
|
||||
+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasPersonWithPublication ?document . "
|
||||
+ " ?document rdfs:label ?documentLabel . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?document core:dateTimeValue ?dateTimeValue . "
|
||||
+ " ?dateTimeValue core:dateTime ?documentPublicationDate } . ";
|
||||
|
||||
QueryRunner<ResultSet> subOrganizationPublicationsQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
subOrganizationPublicationsModel);
|
||||
|
||||
subOrganization.addActivities(getPublicationForEntity(
|
||||
subOrganizationPublicationsQuery.getQueryResult(),
|
||||
allDocumentURIToVOs));
|
||||
|
||||
}
|
||||
return allDocumentURIToVOs;
|
||||
}
|
||||
|
||||
private static Collection<Activity> getPublicationForEntity(
|
||||
ResultSet queryResult,
|
||||
Map<String, Activity> allDocumentURIToVOs) {
|
||||
|
||||
Set<Activity> currentEntityPublications = new HashSet<Activity>();
|
||||
|
||||
while (queryResult.hasNext()) {
|
||||
|
||||
QuerySolution solution = queryResult.nextSolution();
|
||||
|
||||
RDFNode documentNode = solution.get(QueryFieldLabels.DOCUMENT_URL);
|
||||
Activity biboDocument;
|
||||
|
||||
if (allDocumentURIToVOs.containsKey(documentNode.toString())) {
|
||||
biboDocument = allDocumentURIToVOs.get(documentNode.toString());
|
||||
|
||||
} else {
|
||||
|
||||
biboDocument = new Activity(documentNode.toString());
|
||||
allDocumentURIToVOs.put(documentNode.toString(), biboDocument);
|
||||
|
||||
RDFNode publicationDateNode = solution.get(QueryFieldLabels
|
||||
.DOCUMENT_PUBLICATION_DATE);
|
||||
if (publicationDateNode != null) {
|
||||
biboDocument.setActivityDate(publicationDateNode.toString());
|
||||
}
|
||||
}
|
||||
|
||||
currentEntityPublications.add(biboDocument);
|
||||
|
||||
}
|
||||
|
||||
return currentEntityPublications;
|
||||
}
|
||||
|
||||
|
||||
private static Collection<Activity> getGrantForEntity(
|
||||
ResultSet queryResult,
|
||||
Map<String, Activity> allGrantURIToVO) {
|
||||
|
||||
Set<Activity> currentEntityGrants = new HashSet<Activity>();
|
||||
|
||||
while (queryResult.hasNext()) {
|
||||
|
||||
QuerySolution solution = queryResult.nextSolution();
|
||||
|
||||
RDFNode grantNode = solution.get(QueryFieldLabels.GRANT_URL);
|
||||
Activity coreGrant;
|
||||
|
||||
if (allGrantURIToVO.containsKey(grantNode.toString())) {
|
||||
coreGrant = allGrantURIToVO.get(grantNode.toString());
|
||||
|
||||
} else {
|
||||
|
||||
coreGrant = new Activity(grantNode.toString());
|
||||
allGrantURIToVO.put(grantNode.toString(), coreGrant);
|
||||
|
||||
RDFNode grantStartDateNode = solution.get(QueryFieldLabels.ROLE_START_DATE);
|
||||
|
||||
if (grantStartDateNode != null) {
|
||||
coreGrant.setActivityDate(grantStartDateNode.toString());
|
||||
} else {
|
||||
grantStartDateNode = solution
|
||||
.get(QueryFieldLabels.GRANT_START_DATE);
|
||||
if (grantStartDateNode != null) {
|
||||
coreGrant.setActivityDate(grantStartDateNode.toString());
|
||||
}
|
||||
}
|
||||
}
|
||||
currentEntityGrants.add(coreGrant);
|
||||
}
|
||||
return currentEntityGrants;
|
||||
}
|
||||
|
||||
public static Map<String, Activity> getGrantsForAllSubOrganizations(
|
||||
Dataset dataset, Entity organizationEntity)
|
||||
throws MalformedQueryParametersException {
|
||||
Map<String, Activity> allGrantURIToVO = new HashMap<String, Activity>();
|
||||
|
||||
for (SubEntity subOrganization : organizationEntity.getSubEntities()) {
|
||||
|
||||
System.out.println("constructing grants for " + subOrganization.getIndividualLabel() + " :: " + subOrganization.getIndividualURI());
|
||||
|
||||
Model subOrganizationGrantsModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
subOrganization.getIndividualURI(),
|
||||
OrganizationToGrantsForSubOrganizationsModelConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("grant", QueryFieldLabels.GRANT_URL);
|
||||
fieldLabelToOutputFieldLabel.put("grantLabel", QueryFieldLabels.GRANT_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("grantStartDate", QueryFieldLabels.GRANT_START_DATE);
|
||||
fieldLabelToOutputFieldLabel.put("roleStartDate", QueryFieldLabels.ROLE_START_DATE);
|
||||
|
||||
String whereClause = ""
|
||||
+ "{"
|
||||
+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasInvestigatorWithGrant ?grant . "
|
||||
+ " ?grant rdfs:label ?grantLabel . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
||||
+ "}"
|
||||
+ "UNION"
|
||||
+ "{"
|
||||
+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasPIWithGrant ?grant . "
|
||||
+ " ?grant rdfs:label ?grantLabel . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
||||
+ "}"
|
||||
+ "UNION"
|
||||
+ "{"
|
||||
+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hascoPIWithGrant ?grant . "
|
||||
+ " ?grant rdfs:label ?grantLabel . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
||||
+ "}";
|
||||
|
||||
QueryRunner<ResultSet> subOrganizationGrantsQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
subOrganizationGrantsModel);
|
||||
|
||||
subOrganization.addActivities(getGrantForEntity(
|
||||
subOrganizationGrantsQuery.getQueryResult(),
|
||||
allGrantURIToVO));
|
||||
|
||||
}
|
||||
return allGrantURIToVO;
|
||||
}
|
||||
|
||||
public static Map<String, Activity> getGrantForAssociatedPeople(
|
||||
Dataset dataset, Collection<SubEntity> people)
|
||||
throws MalformedQueryParametersException {
|
||||
Map<String, Activity> allGrantURIToVOs = new HashMap<String, Activity>();
|
||||
|
||||
for (SubEntity person : people) {
|
||||
|
||||
System.out.println("constructing grants for " + person.getIndividualLabel() + " :: " + person.getIndividualURI());
|
||||
|
||||
Model personGrantsModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
person.getIndividualURI(),
|
||||
PersonToGrantsModelConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("grant", QueryFieldLabels.GRANT_URL);
|
||||
fieldLabelToOutputFieldLabel.put("grantLabel", QueryFieldLabels.GRANT_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("grantStartDate", QueryFieldLabels.GRANT_START_DATE);
|
||||
fieldLabelToOutputFieldLabel.put("roleStartDate", QueryFieldLabels.ROLE_START_DATE);
|
||||
|
||||
String whereClause = ""
|
||||
+ "{"
|
||||
+ " <" + person.getIndividualURI() + "> vivosocnet:hasGrantAsAnInvestigator ?grant . "
|
||||
+ " ?grant rdfs:label ?grantLabel . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
||||
+ "}"
|
||||
+ "UNION"
|
||||
+ "{"
|
||||
+ " <" + person.getIndividualURI() + "> vivosocnet:hasGrantAsPI ?grant . "
|
||||
+ " ?grant rdfs:label ?grantLabel . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
||||
+ "}"
|
||||
+ "UNION"
|
||||
+ "{"
|
||||
+ " <" + person.getIndividualURI() + "> vivosocnet:hasGrantAsCoPI ?grant . "
|
||||
+ " ?grant rdfs:label ?grantLabel . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?grant vivosocnet:startDateTimeOnGrant ?grantStartDate } . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?grant vivosocnet:startDateTimeOnRole ?roleStartDate } . "
|
||||
+ "}";
|
||||
|
||||
QueryRunner<ResultSet> personGrantsQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
personGrantsModel);
|
||||
|
||||
person.addActivities(getGrantForEntity(
|
||||
personGrantsQuery.getQueryResult(),
|
||||
allGrantURIToVOs));
|
||||
|
||||
}
|
||||
return allGrantURIToVOs;
|
||||
}
|
||||
|
||||
public static Map<String, Activity> getPublicationsForAssociatedPeople(
|
||||
Dataset dataset, Collection<SubEntity> people)
|
||||
throws MalformedQueryParametersException {
|
||||
Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
|
||||
|
||||
for (SubEntity person : people) {
|
||||
|
||||
Model personPublicationsModel = ModelConstructorUtilities
|
||||
.getOrConstructModel(
|
||||
person.getIndividualURI(),
|
||||
PersonToPublicationsModelConstructor.MODEL_TYPE,
|
||||
dataset);
|
||||
|
||||
System.out.println("getting publications for " + person.getIndividualLabel());
|
||||
|
||||
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
|
||||
fieldLabelToOutputFieldLabel.put("document", QueryFieldLabels.DOCUMENT_URL);
|
||||
fieldLabelToOutputFieldLabel.put("documentLabel", QueryFieldLabels.DOCUMENT_LABEL);
|
||||
fieldLabelToOutputFieldLabel.put("documentPublicationDate", QueryFieldLabels.DOCUMENT_PUBLICATION_DATE);
|
||||
|
||||
String whereClause = ""
|
||||
+ " <" + person.getIndividualURI() + "> vivosocnet:hasPublication ?document . "
|
||||
+ " ?document rdfs:label ?documentLabel . "
|
||||
+ " OPTIONAL { "
|
||||
+ " ?document core:dateTimeValue ?dateTimeValue . "
|
||||
+ " ?dateTimeValue core:dateTime ?documentPublicationDate } . ";
|
||||
|
||||
QueryRunner<ResultSet> personPublicationsQuery =
|
||||
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
|
||||
"",
|
||||
whereClause,
|
||||
"",
|
||||
personPublicationsModel);
|
||||
|
||||
person.addActivities(getPublicationForEntity(
|
||||
personPublicationsQuery.getQueryResult(),
|
||||
allDocumentURIToVOs));
|
||||
|
||||
}
|
||||
return allDocumentURIToVOs;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue