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VIVO-870 Move VivoAgentContextNodeFields into the configuration.

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Delete VivoAgentContextNodeFields and its tests and the data files for the tests.
This commit is contained in:
j2blake 2015-01-22 12:38:43 -05:00
parent 4eeb0f5c09
commit c85aed6943
8 changed files with 209 additions and 48915 deletions
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209
rdf/display/everytime/searchIndexerConfigurationVivo.n3
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@ -85,6 +85,215 @@
} }
""" . """ .
:vivodocumentModifier_AgentContextNodeFields
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ;
rdfs:label "Add many fields to agents." ;
:hasTypeRestriction "http://xmlns.com/foaf/0.1/foaf:Agent" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty)
WHERE {
?uri ?b ?c .
?c rdf:type core:Position .
?c core:hrJobTitle ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty)
WHERE {
?uri ?b ?c .
?c rdf:type core:Position .
?c core:relates ?i .
?i rdf:type foaf:Organization .
?i rdfs:label ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty)
WHERE {
?uri ?b ?c .
?c rdf:type core:Position .
?c core:titleOrRole ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?HRJobTitle) as ?hrJobTitle)
(str(?PositionInOrganization) as ?positionInOrganization)
(str(?TitleOrRole) as ?titleOrRole)
WHERE {
?uri ?b ?c .
?c rdf:type core:Position .
OPTIONAL { ?c core:hrJobTitle ?HRJobTitle . } .
OPTIONAL { ?c core:relates ?i .
?i rdf:type foaf:Organization .
?i rdfs:label ?PositionInOrganization . } .
OPTIONAL { ?c core:titleOrRole ?TitleOrRole . } .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty)
WHERE {
?uri ?b ?c .
?c rdf:type core:AdvisingRelationship .
?c rdfs:label ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty)
WHERE {
?uri ?b ?c .
?c rdf:type core:AdvisingRelationship .
?c core:degreeCandidacy ?e .
?e rdfs:label ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?label) as ?adviseeLabel)
WHERE {
?c rdf:type core:AdvisingRelationship .
?c core:relates ?uri .
?uri obo:RO_0000053 ?advisorRole .
?advisorRole rdf:type core:AdvisorRole .
?c core:relates ?d .
?d rdf:type foaf:Person .
?d obo:RO_0000053 ?adviseeRole .
?adviseeRole rdf:type core:AdviseeRole .
?d rdfs:label ?label .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?label) as ?advisorLabel)
WHERE {
?c rdf:type core:AdvisingRelationship .
?c core:relates ?uri .
?uri obo:RO_0000053 ?adviseeRole .
?adviseeRole rdf:type core:AdviseeRole .
?c core:relates ?d .
?d rdf:type foaf:Person .
?d obo:RO_0000053 ?advisorRole .
?advisorRole rdf:type core:AdvisorRole .
?d rdfs:label ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty)
WHERE {
?uri ?b ?c .
?c rdf:type core:Authorship .
?c core:relates ?f .
?f rdf:type foaf:Person .
?f rdfs:label ?ContextNodeProperty .
FILTER( ?f != ?uri )
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?ContextNodeProperty) as ?contextNodeProperty)
WHERE {
?uri ?b ?c .
?c rdf:type core:Authorship .
?c core:relates ?h .
?h rdf:type obo:IAO_0000030 .
?h rdfs:label ?ContextNodeProperty .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?AwardLabel) as ?awardLabel)
(str(?AwardConferredBy) as ?awardConferredBy)
(str(?Description) as ?description)
WHERE {
?uri ?b ?c .
?c rdf:type core:AwardReceipt .
OPTIONAL { ?c core:relates ?e . ?e rdf:type core:Award . ?e rdfs:label ?AwardLabel . } .
OPTIONAL { ?c core:assignedBy ?d . ?d rdf:type foaf:Organization . ?d rdfs:label ?AwardConferredBy . } .
OPTIONAL { ?c core:description ?Description . } .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?OrganizationLabel) as ?organizationLabel)
WHERE {
?uri ?b ?c .
?c rdf:type obo:BFO_0000023 ;
core:roleContributesTo ?Organization .
?Organization rdf:type core:Organization .
?Organization rdfs:label ?OrganizationLabel .
}
""" ;
:hasSparqlQuery """
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (str(?AcademicDegreeLabel) as ?academicDegreeLabel)
(str(?AcademicDegreeAbbreviation) as ?academicDegreeAbbreviation)
(str(?MajorField) as ?majorField)
(str(?DepartmentOrSchool) as ?departmentOrSchool)
(str(?TrainingAtOrganizationLabel) as ?trainingAtOrganizationLabel)
WHERE {
?uri ?b ?c .
?c rdf:type core:EducationalProcess .
OPTIONAL { ?c core:relates ?d .
?d rdf:type core:AwardedDegree .
?d core:relates ?e .
?e rdf:type core:AcademicDegree .
?e rdfs:label ?AcademicDegreeLabel . } .
OPTIONAL { ?c core:majorField ?MajorField .} .
OPTIONAL { ?c core:departmentOrSchool ?DepartmentOrSchool . }
OPTIONAL { ?c obo:RO_0000057 ?f .
?f rdf:type foaf:organization .
?f rdfs:label ?TrainingAtOrganizationLabel . } .
}
""" .
:vivodocumentModifier_MembershipFields :vivodocumentModifier_MembershipFields
a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> , a <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.SimpleSparqlQueryDocumentModifier> ,
<java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ; <java:edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.DocumentModifier> ;

183
src/edu/cornell/mannlib/vitro/webapp/searchindex/documentBuilding/VivoAgentContextNodeFields.java
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@ -1,183 +0,0 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding;
import java.util.ArrayList;
import java.util.List;
/**
* Class that adds text from context nodes to Search Documents for
* foaf:Agent individuals.
*/
public class VivoAgentContextNodeFields extends ContextNodeFields{
static List<String> queriesForAgent = new ArrayList<String>();
public VivoAgentContextNodeFields(){
super(queriesForAgent);
}
protected static final String prefix =
"prefix owl: <http://www.w3.org/2002/07/owl#> "
+ " prefix vitroDisplay: <http://vitro.mannlib.cornell.edu/ontologies/display/1.1#> "
+ " prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> "
+ " prefix core: <http://vivoweb.org/ontology/core#> "
+ " prefix foaf: <http://xmlns.com/foaf/0.1/> "
+ " prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> "
+ " prefix localNav: <http://vitro.mannlib.cornell.edu/ns/localnav#> "
+ " prefix bibo: <http://purl.org/ontology/bibo/> "
+ " prefix obo: <http://purl.obolibrary.org/obo/> \n" ;
//queries for foaf:Agent
static {
/* Positions for People */
queriesForAgent.add(prefix +
"SELECT " +
"(str(?ContextNodeProperty) as ?contextNodeProperty) WHERE {" +
" ?uri rdf:type foaf:Agent . " +
" ?uri ?b ?c . " +
" ?c rdf:type core:Position . " +
" ?c core:hrJobTitle ?ContextNodeProperty . }");
queriesForAgent.add(prefix + "SELECT " +
"(str(?ContextNodeProperty) as ?contextNodeProperty) WHERE {" +
" ?uri rdf:type foaf:Agent . " +
" ?uri ?b ?c . " +
" ?c rdf:type core:Position . " +
" ?c core:relates ?i . " +
" ?i rdf:type foaf:Organization . " +
" ?i rdfs:label ?ContextNodeProperty . }");
queriesForAgent.add(prefix + "SELECT " +
"(str(?ContextNodeProperty) as ?contextNodeProperty) WHERE {" +
" ?uri rdf:type foaf:Agent . " +
" ?uri ?b ?c . " +
" ?c rdf:type core:Position . " +
" ?c core:titleOrRole ?ContextNodeProperty . }");
/* HR Job Title */
queriesForAgent.add(prefix +
"SELECT " +
"(str(?HRJobTitle) as ?hrJobTitle) " +
"(str(?PositionInOrganization) as ?positionInOrganization) " +
"(str(?TitleOrRole) as ?titleOrRole) WHERE {"
+ "?uri rdf:type foaf:Agent ; ?b ?c . "
+ " ?c rdf:type core:Position . "
+ " OPTIONAL { ?c core:hrJobTitle ?HRJobTitle . } . "
+ " OPTIONAL { ?c core:relates ?i . ?i rdf:type foaf:Organization . ?i rdfs:label ?PositionInOrganization . } . "
+ " OPTIONAL { ?c core:titleOrRole ?TitleOrRole . } . "
+ " }");
/* Advisor */
queriesForAgent.add(prefix + "SELECT " +
"(str(?ContextNodeProperty) as ?contextNodeProperty) WHERE {" +
" ?uri rdf:type foaf:Agent ; ?b ?c . " +
" ?c rdf:type core:AdvisingRelationship . " +
" ?c rdfs:label ?ContextNodeProperty . }");
queriesForAgent.add(prefix + "SELECT " +
"(str(?ContextNodeProperty) as ?contextNodeProperty) WHERE {" +
" ?uri rdf:type foaf:Agent ; ?b ?c . " +
" ?c rdf:type core:AdvisingRelationship . " +
" ?c core:degreeCandidacy ?e . ?e rdfs:label ?ContextNodeProperty . }");
queriesForAgent.add(prefix + "SELECT " +
"(str(?label) as ?adviseeLabel) WHERE {" +
" ?uri rdf:type foaf:Agent ." +
" ?c rdf:type core:AdvisingRelationship . " +
" ?c core:relates ?uri . " +
" ?uri obo:RO_0000053 ?advisorRole . " +
" ?advisorRole rdf:type core:AdvisorRole . " +
" ?c core:relates ?d . " +
" ?d rdf:type foaf:Person . " +
" ?d obo:RO_0000053 ?adviseeRole . " +
" ?adviseeRole rdf:type core:AdviseeRole . " +
" ?d rdfs:label ?ContextNodeProperty . }");
queriesForAgent.add(prefix + "SELECT " +
"(str(?label) as ?advisorLabel) WHERE {" +
" ?uri rdf:type foaf:Agent ." +
" ?c rdf:type core:AdvisingRelationship . " +
" ?c core:relates ?uri . " +
" ?uri obo:RO_0000053 ?adviseeRole . " +
" ?adviseeRole rdf:type core:AdviseeRole . " +
" ?c core:relates ?d . " +
" ?d rdf:type foaf:Person . " +
" ?d obo:RO_0000053 ?advisorRole . " +
" ?advisorRole rdf:type core:AdvisorRole . " +
" ?d rdfs:label ?ContextNodeProperty . }");
/* Author */
queriesForAgent.add(prefix + "SELECT " +
"(str(?ContextNodeProperty) as ?contextNodeProperty) WHERE {" +
" ?uri rdf:type foaf:Agent ; ?b ?c . " +
" ?c rdf:type core:Authorship . " +
" ?c core:relates ?f . " +
" ?f rdf:type foaf:Person . " +
" ?f rdfs:label ?ContextNodeProperty . " +
" FILTER( ?f != ?uri ) " +
"}");
queriesForAgent.add(prefix + "SELECT " +
"(str(?ContextNodeProperty) as ?contextNodeProperty) WHERE {" +
" ?uri rdf:type foaf:Agent ; ?b ?c . " +
" ?c rdf:type core:Authorship . " +
" ?c core:relates ?h . " +
" ?h rdf:type obo:IAO_0000030 . ?h rdfs:label ?ContextNodeProperty . }");
/* Award */
queriesForAgent.add(prefix +
"SELECT " +
"(str(?AwardLabel) as ?awardLabel) " +
"(str(?AwardConferredBy) as ?awardConferredBy) " +
"(str(?Description) as ?description) " +
"WHERE {"
+ " ?uri rdf:type foaf:Agent ; ?b ?c . "
+ " ?c rdf:type core:AwardReceipt . "
+ " OPTIONAL { ?c core:relates ?e . ?e rdf:type core:Award . ?e rdfs:label ?AwardLabel . } . "
+ " OPTIONAL { ?c core:assignedBy ?d . ?d rdf:type foaf:Organization . ?d rdfs:label ?AwardConferredBy . } . "
+ " OPTIONAL { ?c core:description ?Description . } . "
+ " }");
/* Role In Organization */
queriesForAgent.add(prefix +
"SELECT (str(?OrganizationLabel) as ?organizationLabel) WHERE {"
+ " ?uri rdf:type foaf:Agent ; ?b ?c . "
+ " ?c rdf:type obo:BFO_0000023 ; core:roleContributesTo ?Organization ."
+ " ?Organization rdf:type core:Organization . "
+ " ?Organization rdfs:label ?OrganizationLabel . "
+ " }");
/* Academic Degree / Educational Training */
queriesForAgent.add(prefix +
"SELECT " +
"(str(?AcademicDegreeLabel) as ?academicDegreeLabel) " +
"(str(?AcademicDegreeAbbreviation) as ?academicDegreeAbbreviation) " +
"(str(?MajorField) as ?majorField) " +
"(str(?DepartmentOrSchool) as ?departmentOrSchool) " +
"(str(?TrainingAtOrganizationLabel) as ?trainingAtOrganizationLabel) WHERE {"
+ " ?uri rdf:type foaf:Agent ; ?b ?c . "
+ " ?c rdf:type core:EducationalProcess . "
+ "OPTIONAL { ?c core:relates ?d . "
+ " ?d rdf:type core:AwardedDegree . "
+ " ?d core:relates ?e . "
+ " ?e rdf:type core:AcademicDegree . "
+ " ?e rdfs:label ?AcademicDegreeLabel . } . "
+ "OPTIONAL { ?c core:majorField ?MajorField .} ."
+ " OPTIONAL { ?c core:departmentOrSchool ?DepartmentOrSchool . }"
+ " OPTIONAL { ?c obo:RO_0000057 ?f . ?f rdf:type foaf:organization . ?f rdfs:label ?TrainingAtOrganizationLabel . } . "
+"}");
}
}

41939
test/edu/cornell/mannlib/vitro/webapp/searchindex/documentBuilding/NIHVIVO3853_DataSet1.rdf
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6610
test/edu/cornell/mannlib/vitro/webapp/searchindex/documentBuilding/VIVO146_DataSet1.n3
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98
test/edu/cornell/mannlib/vitro/webapp/searchindex/documentBuilding/VivoAgentContextNodeFieldsTest.java
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@ -1,98 +0,0 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertTrue;
import java.io.InputStream;
import org.junit.BeforeClass;
import org.junit.Test;
import stubs.edu.cornell.mannlib.vitro.webapp.modelaccess.ContextModelAccessStub;
import com.hp.hpl.jena.rdf.model.Model;
import com.hp.hpl.jena.rdf.model.ModelFactory;
import com.hp.hpl.jena.rdf.model.Property;
import com.hp.hpl.jena.rdf.model.RDFNode;
import com.hp.hpl.jena.rdf.model.ResourceFactory;
import edu.cornell.mannlib.vitro.testing.AbstractTestClass;
import edu.cornell.mannlib.vitro.webapp.beans.Individual;
import edu.cornell.mannlib.vitro.webapp.beans.IndividualImpl;
import edu.cornell.mannlib.vitro.webapp.modelaccess.ModelAccess.WhichService;
import edu.cornell.mannlib.vitro.webapp.rdfservice.impl.jena.model.RDFServiceModel;
public class VivoAgentContextNodeFieldsTest extends AbstractTestClass{
static String SPCA = "http://vivo.mydomain.edu/individual/n8087";
static ContextModelAccessStub contextModels;
@BeforeClass
public static void setup(){
Model m = ModelFactory.createDefaultModel();
InputStream stream = VivoAgentContextNodeFieldsTest
.class.getResourceAsStream("./NIHVIVO3853_DataSet1.rdf");
long preloadSize = m.size();
m.read(stream, null);
assertTrue("expected to load statements from file", m.size() > preloadSize );
assertTrue("expect statements about SPCA",
m.contains(ResourceFactory.createResource(SPCA),(Property) null,(RDFNode) null));
contextModels = new ContextModelAccessStub();
contextModels.setRDFService(WhichService.CONTENT, new RDFServiceModel(m));
}
@Test
public void testJane(){
Individual ind = new IndividualImpl();
ind.setURI(SPCA);
VivoAgentContextNodeFields vacnf = new VivoAgentContextNodeFields();
vacnf.setContextModels(contextModels);
StringBuffer sb = vacnf.getValues( ind );
assertNotNull( sb );
String values = sb.toString();
boolean hasJane = values.toLowerCase().indexOf("jane") > 0;
assertTrue("expected to have jane because SPCA advises jane", hasJane);
}
@Test
public void testWonder(){
Individual ind = new IndividualImpl();
ind.setURI(SPCA);
VivoAgentContextNodeFields vacnf = new VivoAgentContextNodeFields();
vacnf.setContextModels(contextModels);
StringBuffer sb = vacnf.getValues( ind );
assertNotNull( sb );
String values = sb.toString();
boolean hasWonder = values.toLowerCase().indexOf("wonders") > 0;
assertTrue("expected to have jane because SPCA won wonders award", hasWonder);
}
@Test
public void testChimp(){
Individual ind = new IndividualImpl();
ind.setURI(SPCA);
VivoAgentContextNodeFields vacnf = new VivoAgentContextNodeFields();
vacnf.setContextModels(contextModels);
StringBuffer sb = vacnf.getValues( ind );
assertNotNull( sb );
String values = sb.toString();
boolean hasNotChimp = ! (values.toLowerCase().indexOf("chimp") > 0);
assertTrue("expected to not have chimp because jane won chimp award, not SPCA", hasNotChimp);
}
}

83
test/edu/cornell/mannlib/vitro/webapp/searchindex/documentBuilding/VivoAgentContextNodeFieldsTest2.java
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@ -1,83 +0,0 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertTrue;
import java.io.InputStream;
import org.apache.commons.lang.StringUtils;
import org.junit.BeforeClass;
import org.junit.Test;
import stubs.edu.cornell.mannlib.vitro.webapp.modelaccess.ContextModelAccessStub;
import com.hp.hpl.jena.rdf.model.Model;
import com.hp.hpl.jena.rdf.model.ModelFactory;
import com.hp.hpl.jena.rdf.model.Property;
import com.hp.hpl.jena.rdf.model.RDFNode;
import com.hp.hpl.jena.rdf.model.ResourceFactory;
import edu.cornell.mannlib.vitro.testing.AbstractTestClass;
import edu.cornell.mannlib.vitro.webapp.beans.Individual;
import edu.cornell.mannlib.vitro.webapp.beans.IndividualImpl;
import edu.cornell.mannlib.vitro.webapp.modelaccess.ModelAccess.WhichService;
import edu.cornell.mannlib.vitro.webapp.rdfservice.impl.jena.model.RDFServiceModel;
/**
* Second test for VivoAgentContextNodeFields. This is duplicated
* due to using a different data set in the test.
*
*/
public class VivoAgentContextNodeFieldsTest2 extends AbstractTestClass{
static String HISTORY_DEPT = "http://vivo.colorado.edu/deptid_10238" ;
static ContextModelAccessStub contextModels;
@BeforeClass
public static void setup(){
Model m = ModelFactory.createDefaultModel();
InputStream stream = VivoAgentContextNodeFieldsTest2
.class.getResourceAsStream("./VIVO146_DataSet1.n3");
assertTrue("Expected to find RDF data file " , stream != null );
long preloadSize = m.size();
m.read(stream, null, "N3");
assertTrue("expected to load statements from file", m.size() > preloadSize );
System.out.println("size of m : " + m.size());
assertTrue("expect statements about HISTORY_DEPT",
m.contains(ResourceFactory.createResource(HISTORY_DEPT),(Property) null,(RDFNode) null));
contextModels = new ContextModelAccessStub();
contextModels.setRDFService(WhichService.CONTENT, new RDFServiceModel(m));
}
/**
* Test how many times history is returned for context nodes
* of the History department.
*/
@Test
public void testHistory(){
Individual ind = new IndividualImpl();
ind.setURI(HISTORY_DEPT);
VivoAgentContextNodeFields vacnf = new VivoAgentContextNodeFields();
vacnf.setContextModels(contextModels);
StringBuffer sb = vacnf.getValues( ind );
assertNotNull( sb );
String value = sb.toString();
assertTrue("Expected to get some text back from "
+ "VivoAgentContextNodeFields but got none" , !value.trim().isEmpty());
int count = StringUtils.countMatches(value.toLowerCase(),"history");
System.out.println("histories: " + count);
System.out.println("'" + value + "'");
// assertTrue("expected to have jane because SPCA advises jane", hasJane);
}
}

1
utilities/ISF-transition/obsoleteUris/vivo_known_exceptions.txt
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@ -27,7 +27,6 @@ utilities/ISF-transition/obsoleteUris
# 7498 89730 2277668 first_pass.output # 7498 89730 2277668 first_pass.output
# #
test/edu/cornell/mannlib/vitro/webapp/search/solr/NIHVIVO3853_DataSet1.rdf
productMods/WEB-INF/ontologies/update/oldVersion/vivo-event-1.5.owl productMods/WEB-INF/ontologies/update/oldVersion/vivo-event-1.5.owl
productMods/WEB-INF/ontologies/update/oldAnnotations/vivo-core-1.5-annotations.rdf productMods/WEB-INF/ontologies/update/oldAnnotations/vivo-core-1.5-annotations.rdf
productMods/WEB-INF/ontologies/update/diff.tab.txt productMods/WEB-INF/ontologies/update/diff.tab.txt

1
utilities/ISF-transition/obsoleteUris/vivo_known_exceptions_old.txt
View file

@ -21,7 +21,6 @@
# 7498 89730 2277668 first_pass.output # 7498 89730 2277668 first_pass.output
# #
test/edu/cornell/mannlib/vitro/webapp/search/solr/NIHVIVO3853_DataSet1.rdf
productMods/WEB-INF/ontologies/update/oldVersion/vivo-event-1.5.owl productMods/WEB-INF/ontologies/update/oldVersion/vivo-event-1.5.owl
productMods/WEB-INF/ontologies/update/oldAnnotations/vivo-core-1.5-annotations.rdf productMods/WEB-INF/ontologies/update/oldAnnotations/vivo-core-1.5-annotations.rdf
productMods/WEB-INF/ontologies/update/diff.tab.txt productMods/WEB-INF/ontologies/update/diff.tab.txt