1. Updated front-end for temporal graph to display helpful message when it takes mnore than 10 seconds to get the data, most likely due to a cached version not available for the requested entity.
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15b07e56f0
commit
caa941049b
6 changed files with 165 additions and 54 deletions
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@ -57,10 +57,10 @@ public class TemporalGrantVisualizationRequestHandler implements
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}
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// System.out.println("current models in the system are");
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// for (Map.Entry<String, Model> entry : ConstructedModelTracker.getAllModels().entrySet()) {
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// System.out.println(entry.getKey() + " -> " + entry.getValue().size());
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// }
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System.out.println("current models in the system are");
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for (Map.Entry<String, Model> entry : ConstructedModelTracker.getAllModels().entrySet()) {
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System.out.println(entry.getKey() + " -> " + entry.getValue().size());
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}
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//
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return prepareStandaloneMarkupResponse(vitroRequest, entityURI);
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}
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@ -211,11 +211,9 @@ public class SelectOnModelUtilities {
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fieldLabelToOutputFieldLabel.put("document", QueryFieldLabels.DOCUMENT_URL);
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fieldLabelToOutputFieldLabel.put("documentLabel", QueryFieldLabels.DOCUMENT_LABEL);
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fieldLabelToOutputFieldLabel.put("documentPublicationDate", QueryFieldLabels.DOCUMENT_PUBLICATION_DATE);
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fieldLabelToOutputFieldLabel.put("lastCachedDateTime", QueryFieldLabels.LAST_CACHED_AT_DATETIME);
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String whereClause = ""
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+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasPersonWithPublication ?document . "
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+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:lastCachedAt ?lastCachedDateTime . "
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+ " ?document rdfs:label ?documentLabel . "
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+ " OPTIONAL { "
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+ " ?document core:dateTimeValue ?dateTimeValue . "
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@ -232,6 +230,12 @@ public class SelectOnModelUtilities {
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subOrganization,
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allDocumentURIToVOs);
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String lastCachedAtForEntity = getLastCachedAtDateTimeForEntityInModel(
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subOrganization,
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subOrganizationPublicationsModel);
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subOrganization.setLastCachedAtDateTime(lastCachedAtForEntity);
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}
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return allDocumentURIToVOs;
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}
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@ -276,6 +280,22 @@ public class SelectOnModelUtilities {
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subEntity.addActivities(currentEntityPublications);
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}
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public static String getLastCachedAtForEntity(ResultSet queryResult) {
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String lastCachedAtDateTime = null;
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while (queryResult.hasNext()) {
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QuerySolution solution = queryResult.nextSolution();
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RDFNode lastCachedAtNode = solution.get(QueryFieldLabels.LAST_CACHED_AT_DATETIME);
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if (lastCachedAtNode != null) {
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lastCachedAtDateTime = lastCachedAtNode.toString();
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}
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}
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return lastCachedAtDateTime;
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}
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private static void getGrantForEntity(
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ResultSet queryResult,
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@ -334,22 +354,26 @@ public class SelectOnModelUtilities {
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System.out.println("constructing grants for " + subOrganization.getIndividualLabel() + " :: " + subOrganization.getIndividualURI());
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long before = System.currentTimeMillis();
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Model subOrganizationGrantsModel = ModelConstructorUtilities
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.getOrConstructModel(
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subOrganization.getIndividualURI(),
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OrganizationToGrantsForSubOrganizationsModelConstructor.MODEL_TYPE,
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dataset);
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System.out.println("\t construct -> " + (System.currentTimeMillis() - before));
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before = System.currentTimeMillis();
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Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
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fieldLabelToOutputFieldLabel.put("grant", QueryFieldLabels.GRANT_URL);
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fieldLabelToOutputFieldLabel.put("grantLabel", QueryFieldLabels.GRANT_LABEL);
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fieldLabelToOutputFieldLabel.put("grantStartDate", QueryFieldLabels.GRANT_START_DATE);
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fieldLabelToOutputFieldLabel.put("roleStartDate", QueryFieldLabels.ROLE_START_DATE);
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fieldLabelToOutputFieldLabel.put("lastCachedAtDateTime", QueryFieldLabels.LAST_CACHED_AT_DATETIME);
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String whereClause = ""
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+ "{"
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+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:lastCachedAt ?lastCachedAtDateTime . "
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+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasInvestigatorWithGrant ?grant . "
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+ " ?grant rdfs:label ?grantLabel . "
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+ " OPTIONAL { "
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@ -359,7 +383,6 @@ public class SelectOnModelUtilities {
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+ "}"
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+ "UNION"
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+ "{"
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+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:lastCachedAt ?lastCachedAtDateTime . "
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+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasPIWithGrant ?grant . "
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+ " ?grant rdfs:label ?grantLabel . "
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+ " OPTIONAL { "
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@ -369,7 +392,6 @@ public class SelectOnModelUtilities {
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+ "}"
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+ "UNION"
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+ "{"
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+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:lastCachedAt ?lastCachedAtDateTime . "
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+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hascoPIWithGrant ?grant . "
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+ " ?grant rdfs:label ?grantLabel . "
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+ " OPTIONAL { "
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@ -385,19 +407,45 @@ public class SelectOnModelUtilities {
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"",
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subOrganizationGrantsModel);
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// subOrganization.addActivities(getGrantForEntity(
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// subOrganizationGrantsQuery.getQueryResult(),
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// allGrantURIToVO));
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/*
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* This method side-affects the subOrganization entity & the map containing all the grants for
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* the subject organization.
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* */
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getGrantForEntity(subOrganizationGrantsQuery.getQueryResult(), subOrganization, allGrantURIToVO);
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String lastCachedAtForEntity = getLastCachedAtDateTimeForEntityInModel(
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subOrganization,
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subOrganizationGrantsModel);
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subOrganization.setLastCachedAtDateTime(lastCachedAtForEntity);
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System.out.println("\t select -> " + (System.currentTimeMillis() - before));
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}
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return allGrantURIToVO;
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}
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private static String getLastCachedAtDateTimeForEntityInModel(
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SubEntity entity, Model subOrganizationGrantsModel)
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throws MalformedQueryParametersException {
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Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
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fieldLabelToOutputFieldLabel.put("lastCachedAtDateTime", QueryFieldLabels.LAST_CACHED_AT_DATETIME);
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String whereClause = ""
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+ "{"
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+ " <" + entity.getIndividualURI() + "> vivosocnet:lastCachedAt ?lastCachedAtDateTime . "
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+ "}";
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QueryRunner<ResultSet> entityLastCachedAtQuery =
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new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
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"",
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whereClause,
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"",
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subOrganizationGrantsModel);
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String lastCachedAtForEntity = getLastCachedAtForEntity(entityLastCachedAtQuery.getQueryResult());
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return lastCachedAtForEntity;
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}
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public static Map<String, Activity> getGrantsForAssociatedPeople(
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Dataset dataset, Collection<SubEntity> people)
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@ -417,11 +465,9 @@ public class SelectOnModelUtilities {
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fieldLabelToOutputFieldLabel.put("grantLabel", QueryFieldLabels.GRANT_LABEL);
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fieldLabelToOutputFieldLabel.put("grantStartDate", QueryFieldLabels.GRANT_START_DATE);
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fieldLabelToOutputFieldLabel.put("roleStartDate", QueryFieldLabels.ROLE_START_DATE);
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fieldLabelToOutputFieldLabel.put("lastCachedAtDateTime", QueryFieldLabels.LAST_CACHED_AT_DATETIME);
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String whereClause = ""
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+ "{"
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+ " <" + person.getIndividualURI() + "> vivosocnet:lastCachedAt ?lastCachedAtDateTime . "
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+ " <" + person.getIndividualURI() + "> vivosocnet:hasGrantAsAnInvestigator ?grant . "
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+ " ?grant rdfs:label ?grantLabel . "
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+ " OPTIONAL { "
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@ -431,7 +477,6 @@ public class SelectOnModelUtilities {
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+ "}"
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+ "UNION"
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+ "{"
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+ " <" + person.getIndividualURI() + "> vivosocnet:lastCachedAt ?lastCachedAtDateTime . "
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+ " <" + person.getIndividualURI() + "> vivosocnet:hasGrantAsPI ?grant . "
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+ " ?grant rdfs:label ?grantLabel . "
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+ " OPTIONAL { "
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@ -441,7 +486,6 @@ public class SelectOnModelUtilities {
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+ "}"
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+ "UNION"
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+ "{"
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+ " <" + person.getIndividualURI() + "> vivosocnet:lastCachedAt ?lastCachedAtDateTime . "
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+ " <" + person.getIndividualURI() + "> vivosocnet:hasGrantAsCoPI ?grant . "
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+ " ?grant rdfs:label ?grantLabel . "
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+ " OPTIONAL { "
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@ -458,6 +502,14 @@ public class SelectOnModelUtilities {
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peopleGrantsModel);
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getGrantForEntity(personGrantsQuery.getQueryResult(), person, allGrantURIToVOs);
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String lastCachedAtForEntity = getLastCachedAtDateTimeForEntityInModel(
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person,
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peopleGrantsModel);
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person.setLastCachedAtDateTime(lastCachedAtForEntity);
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}
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return allGrantURIToVOs;
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}
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@ -481,10 +533,8 @@ public class SelectOnModelUtilities {
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fieldLabelToOutputFieldLabel.put("document", QueryFieldLabels.DOCUMENT_URL);
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fieldLabelToOutputFieldLabel.put("documentLabel", QueryFieldLabels.DOCUMENT_LABEL);
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fieldLabelToOutputFieldLabel.put("documentPublicationDate", QueryFieldLabels.DOCUMENT_PUBLICATION_DATE);
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fieldLabelToOutputFieldLabel.put("lastCachedAtDateTime", QueryFieldLabels.LAST_CACHED_AT_DATETIME);
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String whereClause = ""
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+ " <" + person.getIndividualURI() + "> vivosocnet:lastCachedAt ?lastCachedAtDateTime . "
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+ " <" + person.getIndividualURI() + "> vivosocnet:hasPublication ?document . "
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+ " ?document rdfs:label ?documentLabel . "
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+ " OPTIONAL { "
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@ -502,6 +552,12 @@ public class SelectOnModelUtilities {
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person,
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allDocumentURIToVOs);
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String lastCachedAtForEntity = getLastCachedAtDateTimeForEntityInModel(
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person,
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peoplePublicationsModel);
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person.setLastCachedAtDateTime(lastCachedAtForEntity);
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}
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return allDocumentURIToVOs;
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}
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