diff --git a/rdf/display/everytime/PropertyConfig.n3 b/rdf/display/everytime/PropertyConfig.n3
index 27f1eca4..b9867932 100644
--- a/rdf/display/everytime/PropertyConfig.n3
+++ b/rdf/display/everytime/PropertyConfig.n3
@@ -52,6 +52,8 @@ local:authorInAuthorshipContext a :ConfigContext ;
local:authorInAuthorshipConfig a :ObjectPropertyDisplayConfig ;
:listViewConfigFile "listViewConfig-authorInAuthorship.xml"^^xsd:string ;
:displayName "selected publications" ;
+ vitro:collateBySubclassAnnot
+ "true"^^xsd:boolean;
vitro:displayRankAnnot 1;
vitro:hiddenFromDisplayBelowRoleLevelAnnot role:public ;
vitro:prohibitedFromUpdateBelowRoleLevelAnnot role:public ;
diff --git a/rdf/tbox/filegraph/agent.owl b/rdf/tbox/filegraph/agent.owl
index a8f938d4..192ff2d2 100644
--- a/rdf/tbox/filegraph/agent.owl
+++ b/rdf/tbox/filegraph/agent.owl
@@ -93,7 +93,7 @@
- topic weight measurement
+
@@ -102,7 +102,7 @@
- expertise measurement
+
@@ -111,7 +111,7 @@
- topic weight measurement process
+
@@ -120,7 +120,7 @@
- expertise measurement process
+
@@ -129,7 +129,7 @@
- experience
+
@@ -138,7 +138,7 @@
- specialty
+
@@ -147,7 +147,7 @@
- technology transfer office
+
An organization that provides services for commercialization and licensing of technologies at an institution.
PERSON: Nicole Vasilevsky
@@ -161,7 +161,7 @@
- manufacturer
+
@@ -188,7 +188,7 @@
- academic department
+
A distinct, usually specialized educational unit within an educational organization.
Endodontics (department within a College of Dentistry); English (department within a College of Liberal Arts)
@@ -200,7 +200,7 @@
- association
+
A formal organization of people or groups of people around a subject or practice.
A group of persons or organizations organized for a common purpose.
@@ -213,7 +213,7 @@
- center
+
A place where a particular activity or service is concentrated.
Alchohol Education Center; Center for Arts and Public Policy; Hearing Research Center
@@ -227,7 +227,7 @@
- clinical organization
+
Any organization that offers significant health services or routinely provides medical care to patients.
Any organization with a significant clinical function as a matter of course and not just through occasional clinical roles
@@ -240,7 +240,7 @@
- college
+
A primary academic unit within a University or a free-standing higher education organization without graduate degree programs
A primary academic unit within a University or a free-standing higher education organization without graduate degree programs.
@@ -253,7 +253,7 @@
- committee
+
A group of people organized for a specific purpose (e.g., a reporting or advisory role), often with a charge and for a specific duration
A group of people organized for a specific purpose, whose members are often selected from a larger group to serve for designated periods of time.
@@ -267,7 +267,7 @@
- company
+
A legally-recognized business organization
A legally-recognized business organization.
@@ -280,7 +280,7 @@
- consortium
+
A group of independent organizations working together toward a common goal, under an expressed agreement.
Committee on Institutional Cooperation (CIC); The Five Colleges of Ohio
@@ -292,7 +292,7 @@
- core laboratory
+
A lab providing services such as training, protocols, or access to instruments or software
@@ -302,7 +302,7 @@
- department
+
A unit within a larger organization that addresses a specific subject or area of activity.
Definition modified from the definition here: http://dictionary.reference.com/browse/department. It is difficult to tell the difference between and department and a division.
@@ -315,7 +315,7 @@
- division
+
A major unit or section within a larger organization.
@@ -329,7 +329,7 @@
- extension unit
+
A unit devoted primarily to extension activities, whether for outreach or research
A unit devoted primarily to extension activities, whether for outreach or research.
@@ -342,7 +342,7 @@
- foundation
+
An institution founded with an endowment to support educational, research, artistic or other charitable activities.
Definition take from: http://dictionary.reference.com/browse/foundation.
@@ -355,7 +355,7 @@
- funding organization
+
A defined class of organizations that fund Grants
An organization that provides financial support to individuals or organizations to carry out specified activities.
@@ -368,7 +368,7 @@
- government agency
+
A unit of government responsible for oversight and regulation of certain activities or the administration and provision of specific services.
Definition take from: http://en.wikipedia.org/wiki/Government_agency.
@@ -381,7 +381,7 @@
- graduate student
+
A person who has already received a bachelor's degree and is working toward a Master's or Doctoral degree.
@@ -391,7 +391,7 @@
- hospital
+
An institution that provides medical, surgical, psychiatric or nursing care.
Definition take from: http://dictionary.reference.com/browse/hospital.
@@ -404,7 +404,7 @@
- institute
+
An Institute normally has a research focus but may also fulfill instructional or outreach roles
An organization founded to pursue or promote certain research, educational or public policy interests or activities.
@@ -417,7 +417,7 @@
- laboratory
+
An organization unit that facilitates or conduits observation, testing, experimentation, or research in a field of study or practice.
An organizational unit (as opposed to the physical facility) that performs research, provides services, or processes materials
@@ -429,7 +429,7 @@
- library
+
An organization maintaining one or more collections of physical and/or electronic information resources for access or lending.
Marston Science Library
@@ -442,7 +442,7 @@
- museum
+
An organization devoted to the acquisition, conservation, study, exhibition, and educational interpretation of objects having scientific, historical, cultural or artistic value.
Definition was take from here: http://dictionary.reference.com/browse/museum
@@ -455,7 +455,7 @@
- private company
+
A private company is one that is privately-owned, and thus, is not publicly-traded in the stock market. Members of the general public cannot purchase stock in a private company unless that company chooses to go public and become a public company.
Definition obtained here: http://answers.ask.com/Business/Finance/what_is_a_private_company. Examples of private companies found here: http://www.forbes.com/2008/11/03/largest-private-companies-biz-privates08-cx_sr_1103private_land.html
@@ -468,7 +468,7 @@
- program
+
A Cornell graduate field (http://vivo.cornell.edu/index.jsp?home=65535&collection=820)
An ongoing academic initiative not formalized with department or division status.
@@ -480,7 +480,7 @@
- publisher (vivo)
+
A person or company whose business is the publishing of books, periodicals, engravings, computer software, etc.
Definition found here: http://dictionary.reference.com/browse/publisher
@@ -493,7 +493,7 @@
- research organization
+
Any organization (likely also asserted as another class of Organization) with a primary, ongoing research function, not just through occasional roles
@@ -504,7 +504,7 @@
- school
+
An institution for instruction in a particular skill or field.
Definition take from here: http://dictionary.reference.com/browse/school.
@@ -517,7 +517,7 @@
- service providing lab
+
A laboratory that provides services
Ideally a defined class -- a Laboratory the provides some Service via the property
@@ -529,7 +529,7 @@
- student
+
A person who is enrolled in an educational institution.
Use only if no specific subclasses of core:Student describe the person.
@@ -540,7 +540,7 @@
- student organization
+
A student organization is an organization, operated by students at a university, whose membership normally consists only of students.
Dancin' Gators
@@ -553,7 +553,7 @@
- team
+
A group of people working together.
An informal organization brought together for the purposes of a project or event
@@ -566,7 +566,7 @@
- undergraduate student
+
A person registered in an undergraduate program leading to a bachelor's degree or an undergraduate diploma or certificate.
@@ -576,7 +576,7 @@
- university
+
An institution of higher education and research, which grants academic degrees in a variety of subjects, and provides both undergraduate education and postgraduate education.
Definition taken from: http://en.wikipedia.org/wiki/University
@@ -595,7 +595,7 @@
- agent (foaf)
+
Agents are things that do stuff
@@ -612,7 +612,7 @@
- group (foaf)
+
A collection of individual agents (and may itself play the role of a Agent, ie. something that can perform actions).
A collection of individual agents.
@@ -629,7 +629,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- organization
+
A generic class encompassing several types of organizations.
@@ -647,7 +647,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- person
+
A person
@@ -674,7 +674,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of allergy and immunology
+
@@ -683,7 +683,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of anesthesiology
+
@@ -692,7 +692,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of colon and rectal surgery
+
@@ -701,7 +701,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of dermatology
+
@@ -710,7 +710,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of emergency medicine
+
@@ -719,7 +719,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of family medicine
+
@@ -728,7 +728,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of internal medicine
+
@@ -737,7 +737,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of medical genetics
+
@@ -746,7 +746,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of neurological surgery
+
@@ -755,7 +755,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of nuclear medicine
+
@@ -764,7 +764,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of obstetrics and gynecology
+
@@ -773,7 +773,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of ophthalmology
+
@@ -782,7 +782,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of orthopaedic surgery
+
@@ -791,7 +791,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of otolaryngology
+
@@ -800,7 +800,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of pathology
+
@@ -809,7 +809,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of pediatrics
+
@@ -818,7 +818,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of physical medicine and rehabilitation
+
@@ -827,7 +827,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of plastic surgery
+
@@ -836,7 +836,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of preventive medicine
+
@@ -845,7 +845,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of psychiatry and neurology
+
@@ -854,7 +854,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of radiology
+
@@ -863,7 +863,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of surgery
+
@@ -872,7 +872,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of thoracic surgery
+
@@ -881,7 +881,7 @@ see: http://xmlns.com/foaf/spec/#term_Group
- american board of urology
+
diff --git a/rdf/tbox/filegraph/bfo-bridge.owl b/rdf/tbox/filegraph/bfo-bridge.owl
index 04732b54..ba485540 100644
--- a/rdf/tbox/filegraph/bfo-bridge.owl
+++ b/rdf/tbox/filegraph/bfo-bridge.owl
@@ -45,7 +45,7 @@
- entity
+
@@ -53,7 +53,7 @@
- continuant
+
@@ -62,7 +62,7 @@
- occurrent
+
@@ -71,7 +71,7 @@
- independent_continuant
+
@@ -80,7 +80,7 @@
- spatial region
+
@@ -89,7 +89,7 @@
- temporal region
+
@@ -98,7 +98,7 @@
- process
+
@@ -107,7 +107,7 @@
- disposition (bfo)
+
@@ -124,7 +124,7 @@
- quality
+
@@ -133,7 +133,7 @@
- specifically_dependent_continuant
+
@@ -142,7 +142,7 @@
- role (bfo)
+
@@ -151,7 +151,7 @@
- site
+
@@ -160,7 +160,7 @@
- generically dependent continuant
+
@@ -169,7 +169,7 @@
- function
+
@@ -178,7 +178,7 @@
- one-dimensional temporal region
+
@@ -187,7 +187,7 @@
- material_entity
+
@@ -196,7 +196,7 @@
- immaterial entity
+
@@ -205,7 +205,7 @@
- zero-dimensional temporal region
+
@@ -238,7 +238,7 @@
- administrator role
+
@@ -247,7 +247,7 @@
- advising process
+
@@ -264,7 +264,7 @@
- attending process
+
@@ -289,7 +289,7 @@
- editor role
+
@@ -298,7 +298,7 @@
- educational process
+
@@ -355,7 +355,7 @@
- organizer role
+
@@ -364,7 +364,7 @@
- organizing process
+
@@ -373,7 +373,7 @@
- outreach provider role
+
@@ -382,7 +382,7 @@
- presenter role
+
@@ -391,7 +391,7 @@
- presenting process
+
@@ -416,7 +416,7 @@
- reviewer role
+
@@ -425,7 +425,7 @@
- teacher role
+
diff --git a/rdf/tbox/filegraph/bfo.owl b/rdf/tbox/filegraph/bfo.owl
index 7bdff289..5b1d8df4 100644
--- a/rdf/tbox/filegraph/bfo.owl
+++ b/rdf/tbox/filegraph/bfo.owl
@@ -12,7 +12,7 @@
- realizable entity
+
(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
diff --git a/rdf/tbox/filegraph/classes-additional.owl b/rdf/tbox/filegraph/classes-additional.owl
index ee0b1f7c..1fe000e8 100644
--- a/rdf/tbox/filegraph/classes-additional.owl
+++ b/rdf/tbox/filegraph/classes-additional.owl
@@ -25,7 +25,7 @@
- research opportunity
+
@@ -57,7 +57,7 @@
- Event
+
@@ -101,7 +101,7 @@
- Academic Article
+
@@ -121,7 +121,7 @@
- Article
+
@@ -147,7 +147,7 @@
- Audio Document
+
@@ -161,7 +161,7 @@
- Audio-Visual Document
+
@@ -175,7 +175,7 @@
- Book
+
@@ -213,7 +213,7 @@
- Book Section
+
@@ -239,7 +239,7 @@
- Collected Document
+
@@ -253,7 +253,7 @@
- Collection
+
@@ -268,7 +268,7 @@
- Conference
+
@@ -282,8 +282,8 @@
- document (IAO)
- Document
+
+
@@ -321,7 +321,7 @@
- Document Part
+
@@ -347,7 +347,7 @@
- Document Status
+
@@ -355,7 +355,7 @@
- Edited Book
+
@@ -381,7 +381,7 @@
- Image
+
@@ -390,7 +390,7 @@
- Journal
+
@@ -404,7 +404,7 @@
- Patent
+
@@ -424,7 +424,7 @@
- Periodical
+
@@ -450,7 +450,7 @@
- Proceedings
+
@@ -458,7 +458,7 @@
- Report
+
@@ -472,7 +472,7 @@
- Series
+
@@ -492,7 +492,7 @@
- Thesis
+
@@ -512,7 +512,7 @@
- Thesis Degree
+
@@ -520,7 +520,7 @@
- Website
+
@@ -534,7 +534,7 @@
- Bibliographic Information Source
+
A source of information about bibliographic citations, such as Google Scholar, Web of Science or Scopus.
@@ -543,7 +543,7 @@
- Global Citation Count
+
The number of times a work has been cited globally, as determined from a particular bibliographic information source on a particular date.
@@ -552,7 +552,7 @@
- Academic Degree
+
@@ -572,7 +572,7 @@
- Academic Department
+
@@ -594,7 +594,7 @@
- Advising Relationship
+
@@ -615,7 +615,7 @@
- Authorship
+
@@ -632,7 +632,7 @@
- Award or Honor Receipt
+
@@ -665,7 +665,7 @@
- Blog Posting
+
@@ -680,7 +680,7 @@
- Catalog
+
@@ -701,7 +701,7 @@
- College
+
@@ -717,7 +717,7 @@
- Conference Paper
+
@@ -732,7 +732,7 @@
- Course
+
@@ -746,7 +746,7 @@
- Credential
+
@@ -772,7 +772,7 @@
- Database
+
@@ -786,7 +786,7 @@
- Educational Process
+
@@ -809,7 +809,7 @@
- Event Series
+
@@ -841,7 +841,7 @@
- Funding Organization
+
@@ -857,7 +857,7 @@
- Grant
+
@@ -883,7 +883,7 @@
- Information Resource
+
@@ -917,7 +917,7 @@
- Issued Credential
+
@@ -955,7 +955,7 @@
- Laboratory
+
@@ -969,7 +969,7 @@
- Position
+
@@ -991,7 +991,7 @@
- Project
+
@@ -1018,7 +1018,7 @@
- Role
+
@@ -1048,7 +1048,7 @@
- Software
+
@@ -1065,7 +1065,7 @@
- University
+
@@ -1079,7 +1079,7 @@
- Working Paper
+
@@ -1094,7 +1094,7 @@
- Agent
+
@@ -1117,7 +1117,7 @@
- Organization
+
@@ -1149,7 +1149,7 @@
- Person
+
diff --git a/rdf/tbox/filegraph/clinical.owl b/rdf/tbox/filegraph/clinical.owl
index 158aa2d8..b55edc1e 100644
--- a/rdf/tbox/filegraph/clinical.owl
+++ b/rdf/tbox/filegraph/clinical.owl
@@ -98,7 +98,7 @@
- human study
+
A clinical trial.
OCRe
@@ -114,7 +114,7 @@
- clinical trial
+
@@ -137,7 +137,7 @@
- phase (ocre)
+
Phase describes the level of a trial required of drugs before (and after) they are routinely used in clinical practice:
- Phase I trials assess toxic effects on humans (not many people participate in them, and usually without controls);
@@ -155,7 +155,7 @@ The concept of phase is not applicable to trials studying certain interventions
- phase 0
+
A Phase 0 trial is an exploratory trial involving very limited human exposure, with no therapeutic or diagnostic intent (e.g., screening study, microdose study). [http://prsinfo.clinicaltrials.gov/definitions.html]
Simona
@@ -166,7 +166,7 @@ The concept of phase is not applicable to trials studying certain interventions
- phase 1
+
A Phase I trial assesses toxic effects on humans (not many people participate, and usually without controls) [Glossary of Terms in The Cochrane Collaboration]
Simona
@@ -177,7 +177,7 @@ The concept of phase is not applicable to trials studying certain interventions
- phase 2
+
A Phase ll trial assesses therapeutic benefit (usually involving a few hundred people, usually with controls, but not always) [Glossary of Terms in The Cochrane Collaboration]
Simona
@@ -188,7 +188,7 @@ The concept of phase is not applicable to trials studying certain interventions
- phase 3
+
A Phase III trial compares the new treatment against standard (or placebo) treatment (usually a full
randomised controlled trial). At this point, a drug can be approved for community use. [Glossary of Terms in The Cochrane Collaboration]
@@ -200,7 +200,7 @@ randomised controlled trial). At this point, a drug can be approved for communit
- phase 4
+
A Phase IV study monitors a new treatment in the community, often to evaluate longterm safety and effectiveness. [Glossary of Terms in The Cochrane Collaboration]
Simona
@@ -211,7 +211,7 @@ randomised controlled trial). At this point, a drug can be approved for communit
- single group study
+
A single group study is an interventional study that has only a single allocation group and no contemporaneuos comparison group.
A study in which an individual acts has his/her own comparison does not fall into this category, since an individual is not a group.
@@ -224,7 +224,7 @@ A study in which an individual acts has his/her own comparison does not fall int
- clinical role
+
A role of observing or treating patients
diff --git a/rdf/tbox/filegraph/contact-vcard.owl b/rdf/tbox/filegraph/contact-vcard.owl
index ebcf83b0..83bbe23c 100644
--- a/rdf/tbox/filegraph/contact-vcard.owl
+++ b/rdf/tbox/filegraph/contact-vcard.owl
@@ -452,7 +452,7 @@
- acquaintance
+
@@ -461,7 +461,7 @@
- address
+
@@ -537,7 +537,7 @@
- addressing
+
@@ -600,7 +600,7 @@
- agent (vcard c)
+
@@ -609,7 +609,7 @@
- calendar
+
@@ -647,7 +647,7 @@
- calendar busy (vcard c)
+
@@ -672,7 +672,7 @@ Was called FBURI in vCard
- calendar link (vcard c)
+
@@ -697,7 +697,7 @@ Was called CALURI in vCard.
- calendar request (vcard c)
+
@@ -722,7 +722,7 @@ Was called CALADRURI in vCard
- category (vcard c)
+
@@ -746,7 +746,7 @@ Was called CALADRURI in vCard
- cell
+
Also called mobile telephone
@@ -756,7 +756,7 @@ Was called CALADRURI in vCard
- child
+
@@ -765,7 +765,7 @@ Was called CALADRURI in vCard
- code (vcard c)
+
Contains all the Code related Classes that are used to indicate vCard Types
@@ -774,7 +774,7 @@ Was called CALADRURI in vCard
- colleague
+
@@ -783,7 +783,7 @@ Was called CALADRURI in vCard
- communication
+
@@ -846,7 +846,7 @@ Was called CALADRURI in vCard
- contact (vcard c)
+
@@ -855,7 +855,7 @@ Was called CALADRURI in vCard
- coresident
+
@@ -864,7 +864,7 @@ Was called CALADRURI in vCard
- coworker
+
@@ -873,7 +873,7 @@ Was called CALADRURI in vCard
- crush
+
@@ -882,7 +882,7 @@ Was called CALADRURI in vCard
- date
+
@@ -891,7 +891,7 @@ Was called CALADRURI in vCard
- email (vcard c)
+
@@ -915,7 +915,7 @@ Was called CALADRURI in vCard
- emergency
+
@@ -924,7 +924,7 @@ Was called CALADRURI in vCard
- explanatory
+
@@ -987,7 +987,7 @@ Was called CALADRURI in vCard
- fax
+
@@ -996,7 +996,7 @@ Was called CALADRURI in vCard
- female (vcard)
+
@@ -1005,7 +1005,7 @@ Was called CALADRURI in vCard
- formatted name
+
@@ -1029,7 +1029,7 @@ Was called CALADRURI in vCard
- friend
+
@@ -1038,7 +1038,7 @@ Was called CALADRURI in vCard
- gender (vcard c)
+
@@ -1047,7 +1047,7 @@ Was called CALADRURI in vCard
- geo (vcard c)
+
@@ -1071,7 +1071,7 @@ Was called CALADRURI in vCard
- geographical
+
@@ -1094,7 +1094,7 @@ Was called CALADRURI in vCard
- group (vcard c)
+