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changing some scires properties to use eagle-i uris

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sjm222 2011-02-09 20:25:26 +00:00
parent 295aaa1e5f
commit d4af907656
6 changed files with 2569 additions and 2569 deletions
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44
productMods/WEB-INF/filegraph/tbox/scires-1.2.owl
View file

@ -27,12 +27,6 @@
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">number of human participants in the study (trial).</vitro:descriptionAnnot>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/ERO_0000016"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#realizesProtocol">
<rdfs:domain rdf:resource="http://vivoweb.org/ontology/core#Service"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#protocolRealizedBy"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/OBI_0000272"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000272">
<rdfs:subClassOf rdf:resource="http://purl.org/ontology/bibo/Document"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
@ -40,9 +34,9 @@
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A plan specification that allows different domain experts to reliably and independently reproduce a process.</vitro:shortDef>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#documentationFor">
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#hasDocumentation"/>
<rdfs:domain rdf:resource="http://purl.org/ontology/bibo/Document"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000460"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Phase4ClinicalTrial">
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 4 Clinical Trial</vitro:shortDef>
@ -51,9 +45,9 @@
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000016"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#accessProvidedBy">
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#providesAccessTo"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/ERO_0000391"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000029"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Ontology"/>
@ -64,11 +58,6 @@
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Research project that uses or collects measurements or assessments about humans.</vitro:shortDef>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000014"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#providesAccessTo">
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#accessProvidedBy"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/ERO_0000391"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Phase2ClinicalTrial">
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 2 Clinical Trial</vitro:shortDef>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000016"/>
@ -86,12 +75,23 @@
<rdfs:subPropertyOf rdf:resource="http://vivoweb.org/ontology/core#identifier"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000460">
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#documentationFor"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<rdfs:range rdf:resource="http://purl.org/ontology/bibo/Document"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000394">
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A service that produces a physical object or data, such as a custom micro-array chip, a made to order antibody, or a behavioral dataset</vitro:descriptionAnnot>
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Service"/>
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A service that produces a physical object or data.</vitro:shortDef>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000481">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<rdfs:domain rdf:resource="http://vivoweb.org/ontology/core#Service"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/OBI_0000272"/>
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#protocolRealizedBy"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000006">
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eagle-i: Material entity that is used in a chemical reaction or other experimental process to detect, measure, examine, or produce other substances.
NOTE: For now we are not addressing whether this is a subclass of foaf:Agent</vitro:descriptionAnnot>
@ -129,16 +129,21 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 3 Clinical Trial</vitro:shortDef>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000004">
<rdfs:subClassOf rdf:nodeID="A0"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
<rdfs:subClassOf rdf:nodeID="A0"/>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:descriptionAnnot>
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Equipment"/>
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:shortDef>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000029">
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#accessProvidedBy"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/ERO_0000391"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A0">
<owl:allValuesFrom rdf:resource="http://purl.org/ontology/bibo/Document"/>
<owl:onProperty rdf:resource="http://vivoweb.org/ontology/scientific-research#hasDocumentation"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Restriction"/>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ERO_0000460"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Phase0ClinicalTrial">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
@ -146,11 +151,6 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 0 is a recent designation for exploratory, first-in-human trials conducted in accordance with the United States Food and Drug Administration's (FDA) 2006 Guidance on Exploratory Investigational New Drug (IND) Studies. Phase 0 trials are also known as human microdosing studies and are designed to speed up the development of promising drugs or imaging agents by establishing very early on whether the drug or agent behaves in human subjects as was expected from preclinical studies.</vitro:descriptionAnnot>
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 0 Clinical Trial</vitro:shortDef>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#hasDocumentation">
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#documentationFor"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<rdfs:range rdf:resource="http://purl.org/ontology/bibo/Document"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000014">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Project"/>
@ -158,8 +158,8 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#protocolRealizedBy">
<rdfs:range rdf:resource="http://vivoweb.org/ontology/core#Service"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#realizesProtocol"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/OBI_0000272"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000481"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000391">
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Service"/>

2474
productMods/WEB-INF/filegraph/tbox/vivo-core-1.2.owl
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40
productMods/WEB-INF/ontologies/user/scires-1.2-annotations.rdf
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@ -30,17 +30,11 @@
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#realizesProtocol">
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<rdfs:label xml:lang="en-US">realizesProtocol</rdfs:label>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#documentationFor">
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupoverview"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">documentationFor</rdfs:label>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupoverview"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000272">
@ -77,12 +71,6 @@
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGrouppublications"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#providesAccessTo">
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">providesAccessTo</rdfs:label>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Phase2ClinicalTrial">
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">5</vitro:displayRankAnnot>
<rdfs:label xml:lang="en-US">Phase 2 Clinical Trial</rdfs:label>
@ -108,6 +96,13 @@
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ClinicalTrials.gov registry number</vitro:publicDescriptionAnnot>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000460">
<rdfs:label xml:lang="en-US">hasDocumentation</rdfs:label>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupoverview"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000394">
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">ProductionService</rdfs:label>
@ -116,6 +111,12 @@
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">20</vitro:displayRankAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000481">
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">realizesProtocol</rdfs:label>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000006">
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGrouppublications"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
@ -170,6 +171,12 @@
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">10</vitro:displayRankAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000029">
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<rdfs:label xml:lang="en-US">providesAccessTo</rdfs:label>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Phase0ClinicalTrial">
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
@ -178,13 +185,6 @@
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGrouppublications"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">6</vitro:displayLimitAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#hasDocumentation">
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupoverview"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">hasDocumentation</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000014">
<rdfs:label xml:lang="en-US">ResearchProject</rdfs:label>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>

62
productMods/WEB-INF/ontologies/user/vivo-core-1.2-annotations.rdf
View file

@ -786,6 +786,12 @@
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#nobody"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000481">
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<rdfs:label xml:lang="en-US">realizesProtocol</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000006">
<rdfs:label xml:lang="en-US">Reagent</rdfs:label>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
@ -974,17 +980,12 @@
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#partOf">
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Relates a component of something to the whole thing.</vitro:publicDescriptionAnnot>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">99</vitro:displayRankAnnot>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000460">
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:fullPropertyNameAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part of</vitro:fullPropertyNameAnnot>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupaffiliation"/>
<rdfs:label xml:lang="en-US">part of</rdfs:label>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">5</vitro:displayLimitAnnot>
<rdfs:label xml:lang="en-US">hasDocumentation</rdfs:label>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupoverview"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:offerCreateNewOptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:offerCreateNewOptionAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#geographicLocationOf">
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
@ -997,6 +998,18 @@
<rdfs:label xml:lang="en-US">geographic location of</rdfs:label>
<vitro:fullPropertyNameAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nearestGeographicLocationFor</vitro:fullPropertyNameAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#partOf">
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Relates a component of something to the whole thing.</vitro:publicDescriptionAnnot>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">99</vitro:displayRankAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:fullPropertyNameAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part of</vitro:fullPropertyNameAnnot>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupaffiliation"/>
<rdfs:label xml:lang="en-US">part of</rdfs:label>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">5</vitro:displayLimitAnnot>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:offerCreateNewOptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:offerCreateNewOptionAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#hasLeaderRole">
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">5</vitro:displayLimitAnnot>
@ -1472,13 +1485,6 @@
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#nobody"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#hasDocumentation">
<rdfs:label xml:lang="en-US">hasDocumentation</rdfs:label>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupoverview"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#principalInvestigatorRoleOf">
<rdfs:label xml:lang="en-US">principal investigator role of</rdfs:label>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupoverview"/>
@ -2659,12 +2665,6 @@
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">codeCurrency</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#realizesProtocol">
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">realizesProtocol</rdfs:label>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#courseCredits">
<rdfs:label xml:lang="en-US">credits</rdfs:label>
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Number of credits assigned a course by an learning institution.</vitro:publicDescriptionAnnot>
@ -3212,9 +3212,9 @@
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#documentationFor">
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupoverview"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupoverview"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<rdfs:label xml:lang="en-US">documentationFor</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://purl.org/ontology/bibo/identifier">
@ -3297,8 +3297,8 @@
</rdf:Description>
<rdf:Description rdf:about="http://purl.org/ontology/bibo/Website">
<rdfs:label xml:lang="en-US">Website</rdfs:label>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGrouppublications"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
@ -3374,8 +3374,8 @@
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://xmlns.com/foaf/0.1/Agent">
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<rdfs:label xml:lang="en-US">Agent</rdfs:label>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
@ -3958,6 +3958,12 @@
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<rdfs:label xml:lang="en-US">Decision</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000029">
<rdfs:label xml:lang="en-US">providesAccessTo</rdfs:label>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#EmeritusProfessor">
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGrouppeople"/>
<rdfs:label xml:lang="en-US">Professor Emeritus</rdfs:label>
@ -4460,12 +4466,6 @@
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#nobody"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#providesAccessTo">
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<rdfs:label xml:lang="en-US">providesAccessTo</rdfs:label>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#currentlyHeadOf">
<vitro:offerCreateNewOptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:offerCreateNewOptionAnnot>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupaffiliation"/>

44
productMods/WEB-INF/submodels/scires-1.2.owl
View file

@ -27,12 +27,6 @@
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">number of human participants in the study (trial).</vitro:descriptionAnnot>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/ERO_0000016"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#realizesProtocol">
<rdfs:domain rdf:resource="http://vivoweb.org/ontology/core#Service"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#protocolRealizedBy"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/OBI_0000272"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0000272">
<rdfs:subClassOf rdf:resource="http://purl.org/ontology/bibo/Document"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
@ -40,9 +34,9 @@
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A plan specification that allows different domain experts to reliably and independently reproduce a process.</vitro:shortDef>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#documentationFor">
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#hasDocumentation"/>
<rdfs:domain rdf:resource="http://purl.org/ontology/bibo/Document"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000460"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Phase4ClinicalTrial">
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 4 Clinical Trial</vitro:shortDef>
@ -51,9 +45,9 @@
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000016"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#accessProvidedBy">
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#providesAccessTo"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/ERO_0000391"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000029"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Ontology"/>
@ -64,11 +58,6 @@
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Research project that uses or collects measurements or assessments about humans.</vitro:shortDef>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000014"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#providesAccessTo">
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#accessProvidedBy"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/ERO_0000391"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Phase2ClinicalTrial">
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 2 Clinical Trial</vitro:shortDef>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000016"/>
@ -86,12 +75,23 @@
<rdfs:subPropertyOf rdf:resource="http://vivoweb.org/ontology/core#identifier"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000460">
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#documentationFor"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<rdfs:range rdf:resource="http://purl.org/ontology/bibo/Document"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000394">
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A service that produces a physical object or data, such as a custom micro-array chip, a made to order antibody, or a behavioral dataset</vitro:descriptionAnnot>
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Service"/>
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A service that produces a physical object or data.</vitro:shortDef>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000481">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<rdfs:domain rdf:resource="http://vivoweb.org/ontology/core#Service"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/OBI_0000272"/>
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#protocolRealizedBy"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000006">
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eagle-i: Material entity that is used in a chemical reaction or other experimental process to detect, measure, examine, or produce other substances.
NOTE: For now we are not addressing whether this is a subclass of foaf:Agent</vitro:descriptionAnnot>
@ -129,16 +129,21 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 3 Clinical Trial</vitro:shortDef>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000004">
<rdfs:subClassOf rdf:nodeID="A0"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
<rdfs:subClassOf rdf:nodeID="A0"/>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:descriptionAnnot>
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Equipment"/>
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:shortDef>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000029">
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#accessProvidedBy"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/ERO_0000391"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A0">
<owl:allValuesFrom rdf:resource="http://purl.org/ontology/bibo/Document"/>
<owl:onProperty rdf:resource="http://vivoweb.org/ontology/scientific-research#hasDocumentation"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Restriction"/>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ERO_0000460"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Phase0ClinicalTrial">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
@ -146,11 +151,6 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 0 is a recent designation for exploratory, first-in-human trials conducted in accordance with the United States Food and Drug Administration's (FDA) 2006 Guidance on Exploratory Investigational New Drug (IND) Studies. Phase 0 trials are also known as human microdosing studies and are designed to speed up the development of promising drugs or imaging agents by establishing very early on whether the drug or agent behaves in human subjects as was expected from preclinical studies.</vitro:descriptionAnnot>
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Phase 0 Clinical Trial</vitro:shortDef>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#hasDocumentation">
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#documentationFor"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<rdfs:range rdf:resource="http://purl.org/ontology/bibo/Document"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000014">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Project"/>
@ -158,8 +158,8 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#protocolRealizedBy">
<rdfs:range rdf:resource="http://vivoweb.org/ontology/core#Service"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/>
<owl:inverseOf rdf:resource="http://vivoweb.org/ontology/scientific-research#realizesProtocol"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/OBI_0000272"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/ERO_0000481"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ERO_0000391">
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Service"/>

2474
productMods/WEB-INF/submodels/vivo-core-1.2.owl
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