Merging 3394 to 3396 from maint-rel-1.3 branch
Cleaning up text inconsistencies and grammar corrections from Tobi.
This commit is contained in:
ejc12
parent
6a89cd166b
commit
d6e84db49b
1 changed files with 264 additions and 249 deletions
|
|
@ -1,4 +1,4 @@
|
|||
<!DOCTYPE html>
|
||||
<!DOCTYPE HTML>
|
||||
<html lang="en">
|
||||
<head>
|
||||
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
|
||||
|
|
@ -12,9 +12,9 @@
|
|||
</div>
|
||||
<!-- Start of content -->
|
||||
<div id="wrapper-content" role="main">
|
||||
<h1>VIVO Release 1 v1.3 Upgrade Guide</h1>
|
||||
<h1>VIVO Release 1 V1.3 Upgrade Guide</h1>
|
||||
<small>
|
||||
July 22, 2011 - Upgrading from Release 1 v1.2 to Release 1 v1.3
|
||||
July 28, 2011 - Upgrading from Release 1 V1.2 to Release 1 V1.3
|
||||
</small>
|
||||
<toc>
|
||||
<ul>
|
||||
|
|
@ -33,77 +33,90 @@
|
|||
at <a href="http://vivoweb.org/">VIVOweb.org</a>
|
||||
</p>
|
||||
<p>
|
||||
If you need to do a fresh install, please consult the VIVO Release
|
||||
1 v1.3 Installation Guide found on <a href="http://vivoweb.org/support">vivoweb.org</a>
|
||||
If you need to do a fresh install, please consult the VIVO Release V1.3 Installation
|
||||
Guide found on <a href="http://vivoweb.org/support">vivoweb.org</a>
|
||||
or the install.html file located in the <code>doc</code>
|
||||
directory of the VIVO source code distribution. The installation document also has a
|
||||
list of the required software and versions (there are no new hardware
|
||||
or software requirements for V1.3).
|
||||
</p>
|
||||
<h3 id="announcement">Release Announcement for V1.3</h3>
|
||||
V<!-- Release Announcement -->IVO Release 1.3 incorporates changes to
|
||||
the search indexing, user accounts, menu management, ontology, and
|
||||
visualizations.
|
||||
<!-- Release Announcement -->VIVO Release V1.3 incorporates changes to the search
|
||||
indexing, user accounts, menu management, ontology, and visualizations, and begins
|
||||
integration of VIVO Harvester functions with VIVO's own ingest tools.
|
||||
<br>
|
||||
<h4>Search</h4>
|
||||
VIVO 1.3 will feature notable improvements to the local search,
|
||||
primarily to improve relevance ranking but also to boost the influence
|
||||
of semantic relationships in the search. This will improve recall by
|
||||
including text from related resources (e.g., adding a person's grant
|
||||
and publication titles to his or her search entry) and by boosting
|
||||
overall relevance ranking based on the number and nature of connections
|
||||
from one individual to others.
|
||||
<br>
|
||||
VIVO is now using Apache Solr (http://lucene.apache.org/solr/) in place
|
||||
of Apache Lucene to improve indexing and faceting of search results.
|
||||
The migration to Solr also aligns the local search with the VIVO
|
||||
multi-site search site under development for release prior to the 2011
|
||||
VIVO Conference.
|
||||
<br>
|
||||
<p>
|
||||
VIVO V1.3 will feature notable improvements to the local search, primarily to improve relevance
|
||||
ranking but also to boost the influence of semantic relationships in the search. This will
|
||||
improve recall by including text from related resources (e.g., adding a person's grant and
|
||||
publication titles to his or her search entry) and by boosting overall relevance ranking
|
||||
based on the number and nature of connections from one individual to others.
|
||||
</p>
|
||||
<p>
|
||||
VIVO is now using Apache Solr (http://lucene.apache.org/solr/) in place of Apache Lucene to
|
||||
improve indexing and faceting of search results. The migration to Solr also aligns the
|
||||
local search with the VIVO multi-site search site under development for release prior to
|
||||
the 2011 VIVO Conference.
|
||||
</p>
|
||||
<h4>Authorization</h4>
|
||||
Release 1.3 provides an entirely new model of authorization within the
|
||||
VIVO application to allow more granular control over system
|
||||
configuration and editing. The first phase of the new user account
|
||||
interface is included in V1.3. This interface provides a user search, a
|
||||
root acount, and password reset functionality where the password gets
|
||||
emailed to the user. The next phase will provide the ability to create
|
||||
new roles.
|
||||
<br>
|
||||
<p>
|
||||
Release V1.3 provides an entirely new model of authorization within the
|
||||
VIVO application to allow more granular control over system
|
||||
configuration and editing. The first phase of the new user account
|
||||
interface is included in V1.3. This interface provides a user search, a
|
||||
root acount, and password reset functionality where the password gets
|
||||
emailed to the user. The next phase will provide the ability to create
|
||||
new roles.
|
||||
</p>
|
||||
<h4>Menu management</h4>
|
||||
The menus across the top of the site (Home, People, Organizations,
|
||||
Research, Events) can now be managed in a web form instead of editing
|
||||
an RDF file. In addition to making site management much easier,
|
||||
form-based editing also allows more control over what classes of data
|
||||
are displayed and provides a mechanism to limit certain menu pages to
|
||||
content identified as internal to the institution.
|
||||
<br>
|
||||
<h4>FreeMaker template improvements</h4>
|
||||
While less directly visible to the public, version 1.3 also includes
|
||||
additional changes focused directly on supporting open source community
|
||||
involvement in extending and customizing VIVO. The development team
|
||||
began a year ago to transition VIVO's code base away from Java Server
|
||||
Pages to the FreeMarker page templating system that much more cleanly
|
||||
separates internal application programming logic from page display.
|
||||
<br>
|
||||
<p>
|
||||
The menus across the top of the site (Home, People, Organizations,
|
||||
Research, Events) can now be managed in a web form instead of editing
|
||||
an RDF file. In addition to making site management much easier,
|
||||
form-based editing also allows more control over what classes of data
|
||||
are displayed and provides a mechanism to limit certain menu pages to
|
||||
content identified as internal to the institution.
|
||||
</p>
|
||||
<h4>FreeMarker template improvements</h4>
|
||||
<p>
|
||||
While less directly visible to the public, V1.3 also includes
|
||||
additional changes focused directly on supporting open source community
|
||||
involvement in extending and customizing VIVO. The development team
|
||||
began a year ago to transition VIVO's code base away from Java Server
|
||||
Pages to the FreeMarker page templating system that much more cleanly
|
||||
separates internal application programming logic from page display.
|
||||
</p>
|
||||
<h4>Visualization</h4>
|
||||
The visualization team has implemented a Map of Science visualization,
|
||||
which allows users to visually explore the scientific strengths of a
|
||||
university, school, department, or person in the VIVO instance. Users
|
||||
will be able to see where an organization or person's interests lay
|
||||
across 13 major scientific disciplines or 554 sub-disciplines, and will
|
||||
be able to see how these disciplines and sub-disciplines interrelate
|
||||
with one another on the map of science. Wireframes and design
|
||||
documentation for upcoming enhanced versions of the Map of Science
|
||||
visualization have already been developed; the Map of Science
|
||||
visualization will most likely be in the form of a PDF that a user can
|
||||
download.
|
||||
<br>
|
||||
Several visualization also now provide a caching feature that improves
|
||||
performance after the initial processing.
|
||||
<br>
|
||||
<p>
|
||||
The visualization team has implemented a Map of Science visualization,
|
||||
which allows users to visually explore the scientific strengths of a
|
||||
university, school, department, or person in the VIVO instance. Users
|
||||
will be able to see where an organization or person's interests lay
|
||||
across 13 major scientific disciplines or 554 sub-disciplines, and will
|
||||
be able to see how these disciplines and sub-disciplines interrelate
|
||||
with one another on the Map of Science. Wireframes and design
|
||||
documentation for upcoming enhanced versions of the Map of Science
|
||||
visualization have already been developed; the Map of Science
|
||||
visualization will most likely be in the form of a PDF that a user can
|
||||
download.
|
||||
</p>
|
||||
<p>
|
||||
Several visualizations also now provide a caching feature that improves
|
||||
performance after the initial processing.
|
||||
</p>
|
||||
<h4>QR Codes</h4>
|
||||
Pages for people in VIVO have the option of displaying QR codes.
|
||||
<br>
|
||||
<p>
|
||||
Pages for people in VIVO now have an icon for displaying QR codes to allow
|
||||
capturing names and available contact information on mobile devices.
|
||||
</p>
|
||||
<h4>Harvester Integration</h4>
|
||||
<p>
|
||||
VIVO sites have the option with Release 1.3 of coordinating the configuration
|
||||
of VIVO and the Harvester to enable many Harvester functions to be initiated
|
||||
from the VIVO Ingest Tools menu in support of more unified and centralized
|
||||
management for data ingest.
|
||||
</p>
|
||||
<h4>Ontology changes</h4>
|
||||
<ul>
|
||||
<li>
|
||||
|
|
@ -127,11 +140,12 @@
|
|||
</li>
|
||||
</ul>
|
||||
<h4>Linked open data</h4>
|
||||
Responses to linked data requests have been enhanced to include
|
||||
additional context about any individual, in working toward a goal of
|
||||
being able to provide all the data in a person's profile available as
|
||||
RDF via a single web request.
|
||||
<br>
|
||||
<p>
|
||||
Responses to linked data requests have been enhanced to include
|
||||
additional context about any individual, in working toward a goal of
|
||||
being able to provide all the data in a person's profile available as
|
||||
RDF via a single web request.
|
||||
</p>
|
||||
<br>
|
||||
<hr><!-- Page break --><!-- Upgrade process for V1.2 --><h2 id="upgrade">Upgrade process for V1.3</h2>
|
||||
<toc>
|
||||
|
|
@ -164,20 +178,23 @@
|
|||
<a href="#upgrade_process">The Upgrade Process</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="upgrade-1.3.html#ontology">Ontology</a>
|
||||
<a href="#ontology">Ontology Changes</a>
|
||||
<ol class="roman3">
|
||||
<li>
|
||||
<a href="upgrade-1.3.html#verify_ontology_upgrade">Verify
|
||||
<a href="#verify_ontology_upgrade">Verify
|
||||
Ontology upgrade process</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="upgrade-1.3.html#ontology_knowledge_base">Ontology
|
||||
<a href="#ontology_knowledge_base">Ontology
|
||||
knowledge
|
||||
base
|
||||
manual review</a>
|
||||
</li>
|
||||
</ol>
|
||||
</li>
|
||||
<li>
|
||||
<a href="#termsofuse">Review the VIVO Terms of Use</a>
|
||||
</li>
|
||||
</ol>
|
||||
<h3 id="preparation">I. Before Performing the Upgrade</h3>
|
||||
<p>
|
||||
|
|
@ -236,9 +253,8 @@
|
|||
below for more information.
|
||||
</li>
|
||||
</ul>
|
||||
<h3 id="changes">II. Noteworthy Changes
|
||||
</h3>
|
||||
<h4 id="triple_store">i. Triple store changes
|
||||
<h3 id="changes">II. Noteworthy Changes</h3>
|
||||
<h4 id="triple_store">i. Triple store
|
||||
<br>
|
||||
</h4>
|
||||
<p>
|
||||
|
|
@ -273,7 +289,7 @@
|
|||
</p>
|
||||
<p>
|
||||
To start the SDB conversion, log in as a system administrator and
|
||||
request /sdbsetup (For example, if your VIVO is installed at
|
||||
request /sdbsetup (for example, if your VIVO is installed at
|
||||
http://vivo.myuniversity.edu/ you would type
|
||||
http://vivo.myuniversity.edu/sdbsetup into your browser).
|
||||
</p>
|
||||
|
|
@ -292,7 +308,7 @@
|
|||
</p>
|
||||
<p>
|
||||
</p>
|
||||
<h4 id="theme">ii. Theme changes</h4>
|
||||
<h4 id="theme">ii. Theme</h4>
|
||||
<p>
|
||||
The vivo-basic theme was deprecated with VIVO V1.2 and is no longer
|
||||
present in the V1.3 release as it does not support V1.2 or V1.3
|
||||
|
|
@ -303,16 +319,14 @@
|
|||
theme.
|
||||
</p>
|
||||
</toc>
|
||||
<h4 id="template">iii. Template changes</h4>
|
||||
<h4 id="template">iii. Template</h4>
|
||||
<toc>
|
||||
<ul>
|
||||
<li>
|
||||
<p>
|
||||
The <code>${stylesheets}</code>, <code>${scripts}</code>,
|
||||
and<code>${headScripts}</code>
|
||||
<code>add()</code>
|
||||
methods now take the
|
||||
full tag as an argument.
|
||||
and <code>${headScripts} add()</code>
|
||||
methods now take the full tag as an argument.
|
||||
This will require a change to all calls to these methods in the
|
||||
templates. This change allows for specification of attributes such as <code>media</code>
|
||||
directly in the tag. For example:
|
||||
|
|
@ -333,8 +347,8 @@
|
|||
</li>
|
||||
<li>
|
||||
The <code>addFromTheme()</code>
|
||||
methods of the <code>${stylesheets}</code>,<code>${scripts}</code>,
|
||||
and<code>${headScripts}</code>
|
||||
methods of the <code>${stylesheets}</code>, <code>${scripts}</code>,
|
||||
and <code>${headScripts}</code>
|
||||
objects have been deleted. Substitute as
|
||||
shown in the preceding example.
|
||||
</li>
|
||||
|
|
@ -346,7 +360,7 @@
|
|||
</li>
|
||||
</ul>
|
||||
</toc>
|
||||
<h4 id="listview">v. List view changes</h4>
|
||||
<h4 id="listview">v. List view</h4>
|
||||
<toc>
|
||||
<code><query-base></code>
|
||||
and <code><query-collated></code>
|
||||
|
|
@ -356,20 +370,19 @@
|
|||
<br>
|
||||
<br>
|
||||
</toc>
|
||||
<h4 id="authorization">v. Authorization changes</h4>
|
||||
<h4 id="authorization">v. Authorization</h4>
|
||||
<toc>
|
||||
<p>
|
||||
In release 1.3, the VIVO authorization system has some extensive
|
||||
In V1.3, the VIVO authorization system has some extensive
|
||||
changes. In summary, these are:
|
||||
</p>
|
||||
<ul>
|
||||
<li>
|
||||
Each user will have a user account, even if the user logs in
|
||||
by
|
||||
Shibboleth or some other external authentication system.
|
||||
with Shibboleth or some other external authentication system.
|
||||
</li>
|
||||
<li>
|
||||
E-mail is used to notify user's when an account is created for
|
||||
E-mail is used to notify users when an account is created for
|
||||
them, or when an administrator edits their account.
|
||||
</li>
|
||||
<li>
|
||||
|
|
@ -385,32 +398,27 @@
|
|||
<dl>
|
||||
<dd>
|
||||
<p style="margin-left: 40px;">
|
||||
With release 1.3, each authenticated
|
||||
user will have a user
|
||||
With V1.3, each authenticated user will have a user
|
||||
account. If someone logs in using an external authentication system,
|
||||
and no user account matches their external login credentials, an
|
||||
account will be created.
|
||||
</p>
|
||||
<p style="margin-left: 40px;">
|
||||
The user will be prompted to enter
|
||||
information for the
|
||||
account
|
||||
being created: first name, last name, and e-mail address.
|
||||
The user will be prompted to enter information for the
|
||||
account being created: first name, last name, and e-mail address.
|
||||
</p>
|
||||
</dd>
|
||||
</dl>
|
||||
</toc>
|
||||
<toc>
|
||||
<h4 style="margin-left: 40px;" id="email_on_accounts">b. E-mail address
|
||||
becomes an important
|
||||
part
|
||||
of User Accounts</h4>
|
||||
becomes an important part of User Accounts</h4>
|
||||
<dl style="margin-left: 40px;">
|
||||
<dd>
|
||||
<p>
|
||||
Prior to release 1.3, each user account was identified by a
|
||||
Prior to V1.3, each user account was identified by a
|
||||
Username field. This field was labeled as "E-mail address" on some
|
||||
pages in VIVO, but no mail was ever sent. In release 1.3, this has
|
||||
pages in VIVO, but no mail was ever sent. In V1.3, this has
|
||||
changed, so the e-mail address is fully used, both for identification
|
||||
and for communication with the user.
|
||||
</p>
|
||||
|
|
@ -426,54 +434,48 @@
|
|||
<dl style="margin-left: 40px;">
|
||||
<dd>
|
||||
<p>
|
||||
Prior to release 1.3, the Username field (also referred to as
|
||||
Prior to V1.3, the Username field (also referred to as
|
||||
'e-mail address') was used for several purposes:
|
||||
</p>
|
||||
<ul>
|
||||
<li>
|
||||
Idenfiying the user account.
|
||||
Idenfiying the user account
|
||||
</li>
|
||||
<li>
|
||||
Part of the user's credentials when logging in (along with
|
||||
a
|
||||
password).
|
||||
a password)
|
||||
</li>
|
||||
<li>
|
||||
Connecting the user account to an external authentication
|
||||
system, like Shibboleth or CUWebAuth.
|
||||
system, like Shibboleth or CUWebAuth
|
||||
</li>
|
||||
<li>
|
||||
Connecting the user account to a personal Profile page.
|
||||
Connecting the user account to a personal Profile page
|
||||
</li>
|
||||
</ul>
|
||||
<p>
|
||||
With release 1.3, these functions are handled by two separate
|
||||
With V1.3, these functions are handled by two separate
|
||||
fields called EmailAddress field and ExternalAuthId.
|
||||
</p>
|
||||
<ul>
|
||||
<li>
|
||||
EmailAddress is used when logging in (along with a
|
||||
password).
|
||||
password)
|
||||
</li>
|
||||
<li>
|
||||
EmailAddress is used to send notifications to the user
|
||||
about
|
||||
changes to his/her account (see below).
|
||||
about changes to his/her account (see below)
|
||||
</li>
|
||||
<li>
|
||||
The ExternalAuthId is used when logging in using an
|
||||
external
|
||||
authentication system.
|
||||
external authentication system
|
||||
</li>
|
||||
<li>
|
||||
The ExternalAuthId is used to connect the user account to
|
||||
a
|
||||
personal Profile page.
|
||||
a personal Profile page
|
||||
<blockquote>
|
||||
<strong>Note:</strong>
|
||||
With release 1.3, the
|
||||
ExternalAuthId can now be matched against either an untyped literal or
|
||||
a string literal in the Profile page.
|
||||
With V1.3, the ExternalAuthId can now be matched against either an untyped literal or a string literal in the Profile page.
|
||||
</blockquote>
|
||||
</li>
|
||||
</ul>
|
||||
|
|
@ -494,7 +496,7 @@
|
|||
<dl style="margin-left: 40px;">
|
||||
<dd>
|
||||
<p>
|
||||
If you are upgrading to VIVO release 1.3 from an existing
|
||||
If you are upgrading to VIVO V1.3 from an existing
|
||||
VIVO
|
||||
installation, the user accounts in your system will be migrated into
|
||||
the new data structures. When migrating an account, both the
|
||||
|
|
@ -511,7 +513,7 @@
|
|||
for
|
||||
this
|
||||
as
|
||||
part of your migration to release 1.3
|
||||
part of your migration to V1.3
|
||||
</p>
|
||||
</dd>
|
||||
</dl>
|
||||
|
|
@ -526,7 +528,7 @@
|
|||
<dl style="margin-left: 40px;">
|
||||
<dd>
|
||||
<p>
|
||||
With release 1.3, VIVO users receive e-mail notifications
|
||||
With V1.3, VIVO users receive e-mail notifications
|
||||
when
|
||||
an account is created or modified for them or by them.
|
||||
</p>
|
||||
|
|
@ -565,7 +567,7 @@
|
|||
</toc>
|
||||
<div style="margin-left: 40px;">
|
||||
<toc>
|
||||
<h5 style="margin-left: 40px;">4. Disabling e-mail notificiation</h5>
|
||||
<h5 style="margin-left: 40px;">4. Disabling e-mail notification</h5>
|
||||
</toc>
|
||||
</div>
|
||||
<toc>
|
||||
|
|
@ -573,7 +575,7 @@
|
|||
<dd>
|
||||
<p>
|
||||
The e-mail notification relies on two configuration
|
||||
properties:<code>email.smtpHost</code>
|
||||
properties: <code>email.smtpHost</code>
|
||||
and <code>email.replyTo</code>. If either of these properties is
|
||||
missing or empty, VIVO will not attempt to send e-mail notifications to
|
||||
users.
|
||||
|
|
@ -597,10 +599,10 @@
|
|||
<dl>
|
||||
<dd>
|
||||
<p style="margin-left: 40px;">
|
||||
Prior to release 1.3, each VIVO
|
||||
Prior to V1.3, each VIVO
|
||||
installation was created with
|
||||
a
|
||||
default administrator's account. In release 1.3, there is no such
|
||||
default administrator's account. In V1.3, there is no such
|
||||
account. Instead, each VIVO installation will have a "root" account.
|
||||
</p>
|
||||
<p style="margin-left: 40px;">
|
||||
|
|
@ -622,23 +624,23 @@
|
|||
</div>
|
||||
<blockquote style="margin-left: 40px;">
|
||||
<strong>Note:</strong>
|
||||
the<code>initialAdminUser</code>
|
||||
the <code>initialAdminUser</code>
|
||||
is no longer use.
|
||||
</blockquote>
|
||||
<p style="margin-left: 40px;">
|
||||
The root account is not a site
|
||||
administrator's account — it
|
||||
is
|
||||
more powerful than a site administrator's acocunt. The root account is
|
||||
more powerful than a site administrator's account. The root account is
|
||||
permitted to visit any page in a VIVO application. It is permitted to
|
||||
see any data property, and to enter data into any field. As such, the
|
||||
root account can be very useful and rather dangerous. It can also give
|
||||
you a distorted view of what your VIVO site looks like, since data is
|
||||
shown which other accounts cannot see.
|
||||
shown here which ins not visible to other accounts.
|
||||
</p>
|
||||
<p style="margin-left: 40px;">
|
||||
The root account is not intended for
|
||||
routine, every day use.
|
||||
routine, everyday use.
|
||||
The best way to use the root account is to create a site
|
||||
administrator's account. After that, use the root account only when
|
||||
necessary.
|
||||
|
|
@ -762,20 +764,19 @@
|
|||
made to Solr, the IP address of the requestor must match one of the
|
||||
patterns, or the request will be rejected.
|
||||
<br>
|
||||
Examples:
|
||||
<code>
|
||||
<ul>
|
||||
<li>
|
||||
vitro.local.solr.ipaddress.mask = 127\.0\.0\.1
|
||||
</li>
|
||||
<li>
|
||||
vitro.local.solr.ipaddress.mask =
|
||||
127\.0\.0\.1,0:0:0:0:0:0:0:1
|
||||
</li>
|
||||
<li>
|
||||
vitro.local.solr.ipaddress.mask = 169.254.*
|
||||
</li>
|
||||
</ul>
|
||||
Examples:<code>
|
||||
<ul>
|
||||
<li>
|
||||
vitro.local.solr.ipaddress.mask = 127\.0\.0\.1
|
||||
</li>
|
||||
<li>
|
||||
vitro.local.solr.ipaddress.mask =
|
||||
127\.0\.0\.1,0:0:0:0:0:0:0:1
|
||||
</li>
|
||||
<li>
|
||||
vitro.local.solr.ipaddress.mask = 169.254.*
|
||||
</li>
|
||||
</ul>
|
||||
</code>
|
||||
</td>
|
||||
</tr>
|
||||
|
|
@ -950,7 +951,7 @@
|
|||
<tr>
|
||||
<td colspan="2">
|
||||
Specify a driver class name to use a database
|
||||
other than MySQL. Otherwise, leave this value unchanged. This JAR file
|
||||
other than MySQL. Otherwise, leave this value unchanged. The JAR file
|
||||
for this driver must be added to the the webapp/lib directory within
|
||||
the vitro.core.dir specified above.
|
||||
</td>
|
||||
|
|
@ -1026,7 +1027,7 @@
|
|||
The number of grants and publications is large.
|
||||
</li>
|
||||
</ul>
|
||||
VIVO 1.3 release mitigates this problem by the way of a caching
|
||||
VIVO V1.3 mitigates this problem by the way of a caching
|
||||
mechanism and hence we can safely set this to be enabled by default.
|
||||
</td>
|
||||
</tr>
|
||||
|
|
@ -1142,17 +1143,16 @@
|
|||
</p>
|
||||
<p>
|
||||
6. Start Apache Tomcat and log into VIVO as the root user when the upgrade is
|
||||
completed. Depending on the size of your database, the migration process may
|
||||
take up to several hours. When it is complete, you will
|
||||
see a message in the catalina.log file that the server has started.
|
||||
<pre>INFO: Server startup in XXXXX ms</pre>
|
||||
completed. Depending on the size of your database, the migration process may
|
||||
take up to several hours. When it is complete, you will
|
||||
see a message in the catalina.log file that the server has started.<pre>INFO: Server startup in XXXXX ms</pre>
|
||||
</p>
|
||||
<p>
|
||||
7. As root or an administrator, request a rebuild of the Solr search index:
|
||||
Go to the "Site Admin" page and click on "Rebuild Search Index" under the
|
||||
heading "Refresh Content". You can check on the
|
||||
rebuild status by looking at the vivo.all.log in the tomcat logs.
|
||||
</p>
|
||||
<p>
|
||||
7. As root or an administrator, request a rebuild of the Solr search index:
|
||||
Go to the "Site Admin" page and click on "Rebuild Search Index" under the
|
||||
heading "Refresh Content". You can check on the
|
||||
rebuild status by looking at the vivo.all.log in the tomcat logs.
|
||||
</p>
|
||||
<h3 id="ontology">IV. Ontology Changes</h3>
|
||||
<h4 id="verify_ontology_upgrade">i. Verify Ontology upgrade process</h4>
|
||||
<p>
|
||||
|
|
@ -1267,11 +1267,26 @@
|
|||
new default value will be propagated to the knowledge base.
|
||||
</dd>
|
||||
</dl>
|
||||
<h3 id="termsofuse">V. Review the VIVO Terms of Use</h3>
|
||||
<p>
|
||||
VIVO comes with a "Terms of Use" statement linked from the footer. The "Site Name"
|
||||
you assign in the "Site Information" form under the <strong>Site Admin</strong>
|
||||
area will be
|
||||
inserted into the "Terms of Use" statement. If you want to edit the text content more than just
|
||||
the "Site Name", the file can be found here:<pre>[vivo_source_dir]/vitro-core/webapp/web/templates/freemarker/body/termsOfUse.ftl</pre>
|
||||
Be sure to make the changes in your source files and deploy them to your tomcat so you don't lose
|
||||
your changes next time you deploy for another reason.
|
||||
</p>
|
||||
<h3>Next Step ...</h3>
|
||||
<p>
|
||||
Now that you have VIVO up and running, please go read the <a href="http://sourceforge.net/apps/mediawiki/vivo/index.php?title=Site_Administrator_Guide">Site Administrator's Guide</a>.
|
||||
</p>
|
||||
</div>
|
||||
<!-- #wrapper-content -->
|
||||
<div id="footer" role="contentinfo">
|
||||
<p class="copyright">
|
||||
<small>
|
||||
©2011 All Rights Reserved | <a class="terms" href="/termsOfUse">Terms of Use</a>
|
||||
©2011 All Rights Reserved
|
||||
</small>
|
||||
| Powered
|
||||
by <a class="powered-by-vivo" href="http://vivoweb.org" target="_blank"><strong>VIVO</strong></a>
|
||||
|
|
|
|||
Loading…
Add table
Reference in a new issue