diff --git a/paper/paper.md b/paper/paper.md new file mode 100644 index 00000000..7a01ce19 --- /dev/null +++ b/paper/paper.md @@ -0,0 +1,163 @@ +--- +title: 'VIVO: a system for research discovery' +tags: + - ontology + - semantic-web + - linked-data + - research-discovery + - open-scholarship + - linked-open-data + - open-science + - Java +authors: + - name: Michael Conlon + orcid: 0000-0002-1304-8447 + affiliation: 1 + - name: Andrew Woods + orcid: 0000-0002-8318-4225 + affiliation: 2 + - name: Graham Triggs + orcid: 0000-0001-8530-8917 + affiliation: "2, 3" + - name: Ralph O'Flinn + orcid: 0000-0003-4002-1335 + affiliation: 5 + - name: Muhammad Javed + orcid: 0000-0001-9770-7640 + affiliation: 4 + - name: Jim Blake + orcid: 0000-0002-2487-2554 + affiliation: 4 + - name: Benjamin Gross + orcid: 0000-0002-7908-1987 + affiliation: "9, 10" + - name: Qazi Azim Ijaz Ahmad + orcid: 0000-0001-8959-6370 + affiliation: 3 + - name: Sabih Ali + orcid: 0000-0002-7140-8754 + affiliation: 6 + - name: Martin Barber + orcid: 0000-0001-7924-0741 + affiliation: 3 + - name: Don Elsborg + Orcid: 0000-0003-0100-716X + affiliation: 7 + - name: Kitio Fofack + orcid: 0000-0002-6187-4436 + affiliation: 8 + - name: Christian Hauschke + orcid: 0000-0003-2499-7741 + affiliation: 3 + - name: Violeta Ilik + orcid: 0000-0003-2588-3084 + affiliation: 11 + - name: Huda Khan + orcid: 0000-0001-5156-4621 + affiliation: 4 + - name: Ted Lawless + orcid: 0000-0002-3287-5202 + affiliation: "10, 12" + - name: Jacob Levernier + orcid: 0000-0003-1563-7314 + affiliation: 13 + - name: Brian Lowe + orcid: 0000-0002-8143-6345 + affiliation: 14 + - name: Jose Luis Martin + orcid: + affiliation: 15 + - name: Steve McKay + orcid: + affiliation: 16 + - name: Simon Porter + orcid: 0000-0002-6151-8423 + affiliation: 6 + - name: Tatiana Walther + orcid: 0000-0001-8127-2988 + affiliation: 3 + - name: Marijane White + Orcid: 0000-0001-5059-4132 + affiliation: 17 + - name: Stefan Wolff + orcid: + affiliation: 18 + - name: Rebecca Younes + orcid: + affiliation: 4 +affiliations: + - name: University of Florida, Gainesville, Florida, US + index: 1 + - name: Duraspace, Inc., Beaverton, OR, US + index: 2 + - name: Technische Informationsbibliothek (TIB) – German National Library of Science and Technology, Hannover, DE + index: 3 + - name: Cornell University, Ithaca, NY, US + index: 4 + - name: University of Alabama Birmingham, Birmingham, AL, US + index: 5 + - name: Digital Science, London, UK + index: 6 + - name: University of Colorado, Boulder, CO, US + index: 7 + - name: Université du Québec à Montréal, Montréal, QC, CA + index: 8 + - name: UNAVCO, Inc., Boulder, CO, US + index: 9 + - name: Clarivate Analytics, Inc., Philadelphia, PA, US + index: 10 + - name: Columbia University, New York, NY, US + index: 11 + - name: Brown University, Providence, RI, US + index: 12 + - name: University of Pennsylvania, Philadelphia, PA, US + index: 13 + - name: Ontocale SRL, Bucharest, RO + index: 14 + - name: Universidad Carlos III de Madrid, Madrid, ES + index: 15 + - name: Plum Analytics, Inc., Philadelphia, PA, US + index: 16 + - name: Oregon Health & Science University, Portland, OR, US + index: 17 + - name: Sächsische Landesbibliothek Staats und Universitätsbibliothek, Dresden, DE + index: 18 +date: 19 July 2018 +bibliography: paper.bib +--- + +# Summary + +VIVO [Pronunciation: vee-voh] is member-supported, enterprise open source +software and an ontology for representing scholarship. VIVO supports recording, editing, +searching, browsing and visualizing scholarly activity. VIVO encourages research +discovery, expert finding, network analysis and assessment of research impact. +VIVO is easily extended to support additional domains of scholarly activity. + +VIVO uses an ontology to represent people, papers, grants, projects, datasets, resources, +and other elements of research and scholarship as linked open data. The ontology can +be used to create RDF that can be loaded into VIVO. VIVO RDF data is easily exported for +use in other applications. + +VIVO includes Vitro, a domain-free engine for managing linked open data, the JFact +reasoner, SolR for search, SPARQL query, Jena as a triple store, supporting both TDB +and SDB on MySQL, uses D3 for visualizations, and provides multiple APIs, including +Triple Pattern Fragments for rapid remote access to specified data. + +Using VIVO, organizations can represent the activities and accomplishments of their +scholars as linked open data, and share that data with others. + +# Acknowledgements + +The authors wish to acknowledge the foundational work done on VIVO, and VIVO concepts by +the team at the Mann Agricultural Library, Cornell University, led by Jon Corson-Rikert. +The authors also wish to acknowledge NIH grant 1U24RR029822-01 to the first author, which +funded the work of more than 120 co-investigators in the further development of the +VIVO software, and NIH grant xxxxxxx to Dr. Melissa Haendel of Oregon Health Science +University which funded significant advances in the VIVO Integrated Semantic Framework, +which VIVO uses to represent scholarship. Finally, the authors wish to acknowledge the +many hundreds of members of the VIVO community around the world, who volunteer their +time and effort to advance the art of representing scholarship as linked open data. The +work described here builds on the work of many others. + +# References