diff --git a/rdf/tbox/filegraph/agent.owl b/rdf/tbox/filegraph/agent.owl index a8f938d4..192ff2d2 100644 --- a/rdf/tbox/filegraph/agent.owl +++ b/rdf/tbox/filegraph/agent.owl @@ -93,7 +93,7 @@ - topic weight measurement + @@ -102,7 +102,7 @@ - expertise measurement + @@ -111,7 +111,7 @@ - topic weight measurement process + @@ -120,7 +120,7 @@ - expertise measurement process + @@ -129,7 +129,7 @@ - experience + @@ -138,7 +138,7 @@ - specialty + @@ -147,7 +147,7 @@ - technology transfer office + An organization that provides services for commercialization and licensing of technologies at an institution. PERSON: Nicole Vasilevsky @@ -161,7 +161,7 @@ - manufacturer + @@ -188,7 +188,7 @@ - academic department + A distinct, usually specialized educational unit within an educational organization. Endodontics (department within a College of Dentistry); English (department within a College of Liberal Arts) @@ -200,7 +200,7 @@ - association + A formal organization of people or groups of people around a subject or practice. A group of persons or organizations organized for a common purpose. @@ -213,7 +213,7 @@ - center + A place where a particular activity or service is concentrated. Alchohol Education Center; Center for Arts and Public Policy; Hearing Research Center @@ -227,7 +227,7 @@ - clinical organization + Any organization that offers significant health services or routinely provides medical care to patients. Any organization with a significant clinical function as a matter of course and not just through occasional clinical roles @@ -240,7 +240,7 @@ - college + A primary academic unit within a University or a free-standing higher education organization without graduate degree programs A primary academic unit within a University or a free-standing higher education organization without graduate degree programs. @@ -253,7 +253,7 @@ - committee + A group of people organized for a specific purpose (e.g., a reporting or advisory role), often with a charge and for a specific duration A group of people organized for a specific purpose, whose members are often selected from a larger group to serve for designated periods of time. @@ -267,7 +267,7 @@ - company + A legally-recognized business organization A legally-recognized business organization. @@ -280,7 +280,7 @@ - consortium + A group of independent organizations working together toward a common goal, under an expressed agreement. Committee on Institutional Cooperation (CIC); The Five Colleges of Ohio @@ -292,7 +292,7 @@ - core laboratory + A lab providing services such as training, protocols, or access to instruments or software @@ -302,7 +302,7 @@ - department + A unit within a larger organization that addresses a specific subject or area of activity. Definition modified from the definition here: http://dictionary.reference.com/browse/department. It is difficult to tell the difference between and department and a division. @@ -315,7 +315,7 @@ - division + A major unit or section within a larger organization. @@ -329,7 +329,7 @@ - extension unit + A unit devoted primarily to extension activities, whether for outreach or research A unit devoted primarily to extension activities, whether for outreach or research. @@ -342,7 +342,7 @@ - foundation + An institution founded with an endowment to support educational, research, artistic or other charitable activities. Definition take from: http://dictionary.reference.com/browse/foundation. @@ -355,7 +355,7 @@ - funding organization + A defined class of organizations that fund Grants An organization that provides financial support to individuals or organizations to carry out specified activities. @@ -368,7 +368,7 @@ - government agency + A unit of government responsible for oversight and regulation of certain activities or the administration and provision of specific services. Definition take from: http://en.wikipedia.org/wiki/Government_agency. @@ -381,7 +381,7 @@ - graduate student + A person who has already received a bachelor's degree and is working toward a Master's or Doctoral degree. @@ -391,7 +391,7 @@ - hospital + An institution that provides medical, surgical, psychiatric or nursing care. Definition take from: http://dictionary.reference.com/browse/hospital. @@ -404,7 +404,7 @@ - institute + An Institute normally has a research focus but may also fulfill instructional or outreach roles An organization founded to pursue or promote certain research, educational or public policy interests or activities. @@ -417,7 +417,7 @@ - laboratory + An organization unit that facilitates or conduits observation, testing, experimentation, or research in a field of study or practice. An organizational unit (as opposed to the physical facility) that performs research, provides services, or processes materials @@ -429,7 +429,7 @@ - library + An organization maintaining one or more collections of physical and/or electronic information resources for access or lending. Marston Science Library @@ -442,7 +442,7 @@ - museum + An organization devoted to the acquisition, conservation, study, exhibition, and educational interpretation of objects having scientific, historical, cultural or artistic value. Definition was take from here: http://dictionary.reference.com/browse/museum @@ -455,7 +455,7 @@ - private company + A private company is one that is privately-owned, and thus, is not publicly-traded in the stock market. Members of the general public cannot purchase stock in a private company unless that company chooses to go public and become a public company. Definition obtained here: http://answers.ask.com/Business/Finance/what_is_a_private_company. Examples of private companies found here: http://www.forbes.com/2008/11/03/largest-private-companies-biz-privates08-cx_sr_1103private_land.html @@ -468,7 +468,7 @@ - program + A Cornell graduate field (http://vivo.cornell.edu/index.jsp?home=65535&collection=820) An ongoing academic initiative not formalized with department or division status. @@ -480,7 +480,7 @@ - publisher (vivo) + A person or company whose business is the publishing of books, periodicals, engravings, computer software, etc. Definition found here: http://dictionary.reference.com/browse/publisher @@ -493,7 +493,7 @@ - research organization + Any organization (likely also asserted as another class of Organization) with a primary, ongoing research function, not just through occasional roles @@ -504,7 +504,7 @@ - school + An institution for instruction in a particular skill or field. Definition take from here: http://dictionary.reference.com/browse/school. @@ -517,7 +517,7 @@ - service providing lab + A laboratory that provides services Ideally a defined class -- a Laboratory the provides some Service via the property @@ -529,7 +529,7 @@ - student + A person who is enrolled in an educational institution. Use only if no specific subclasses of core:Student describe the person. @@ -540,7 +540,7 @@ - student organization + A student organization is an organization, operated by students at a university, whose membership normally consists only of students. Dancin' Gators @@ -553,7 +553,7 @@ - team + A group of people working together. An informal organization brought together for the purposes of a project or event @@ -566,7 +566,7 @@ - undergraduate student + A person registered in an undergraduate program leading to a bachelor's degree or an undergraduate diploma or certificate. @@ -576,7 +576,7 @@ - university + An institution of higher education and research, which grants academic degrees in a variety of subjects, and provides both undergraduate education and postgraduate education. Definition taken from: http://en.wikipedia.org/wiki/University @@ -595,7 +595,7 @@ - agent (foaf) + Agents are things that do stuff @@ -612,7 +612,7 @@ - group (foaf) + A collection of individual agents (and may itself play the role of a Agent, ie. something that can perform actions). A collection of individual agents. @@ -629,7 +629,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - organization + A generic class encompassing several types of organizations. @@ -647,7 +647,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - person + A person @@ -674,7 +674,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of allergy and immunology + @@ -683,7 +683,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of anesthesiology + @@ -692,7 +692,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of colon and rectal surgery + @@ -701,7 +701,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of dermatology + @@ -710,7 +710,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of emergency medicine + @@ -719,7 +719,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of family medicine + @@ -728,7 +728,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of internal medicine + @@ -737,7 +737,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of medical genetics + @@ -746,7 +746,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of neurological surgery + @@ -755,7 +755,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of nuclear medicine + @@ -764,7 +764,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of obstetrics and gynecology + @@ -773,7 +773,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of ophthalmology + @@ -782,7 +782,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of orthopaedic surgery + @@ -791,7 +791,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of otolaryngology + @@ -800,7 +800,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of pathology + @@ -809,7 +809,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of pediatrics + @@ -818,7 +818,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of physical medicine and rehabilitation + @@ -827,7 +827,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of plastic surgery + @@ -836,7 +836,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of preventive medicine + @@ -845,7 +845,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of psychiatry and neurology + @@ -854,7 +854,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of radiology + @@ -863,7 +863,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of surgery + @@ -872,7 +872,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of thoracic surgery + @@ -881,7 +881,7 @@ see: http://xmlns.com/foaf/spec/#term_Group - american board of urology + diff --git a/rdf/tbox/filegraph/bfo-bridge.owl b/rdf/tbox/filegraph/bfo-bridge.owl index 04732b54..ba485540 100644 --- a/rdf/tbox/filegraph/bfo-bridge.owl +++ b/rdf/tbox/filegraph/bfo-bridge.owl @@ -45,7 +45,7 @@ - entity + @@ -53,7 +53,7 @@ - continuant + @@ -62,7 +62,7 @@ - occurrent + @@ -71,7 +71,7 @@ - independent_continuant + @@ -80,7 +80,7 @@ - spatial region + @@ -89,7 +89,7 @@ - temporal region + @@ -98,7 +98,7 @@ - process + @@ -107,7 +107,7 @@ - disposition (bfo) + @@ -124,7 +124,7 @@ - quality + @@ -133,7 +133,7 @@ - specifically_dependent_continuant + @@ -142,7 +142,7 @@ - role (bfo) + @@ -151,7 +151,7 @@ - site + @@ -160,7 +160,7 @@ - generically dependent continuant + @@ -169,7 +169,7 @@ - function + @@ -178,7 +178,7 @@ - one-dimensional temporal region + @@ -187,7 +187,7 @@ - material_entity + @@ -196,7 +196,7 @@ - immaterial entity + @@ -205,7 +205,7 @@ - zero-dimensional temporal region + @@ -238,7 +238,7 @@ - administrator role + @@ -247,7 +247,7 @@ - advising process + @@ -264,7 +264,7 @@ - attending process + @@ -289,7 +289,7 @@ - editor role + @@ -298,7 +298,7 @@ - educational process + @@ -355,7 +355,7 @@ - organizer role + @@ -364,7 +364,7 @@ - organizing process + @@ -373,7 +373,7 @@ - outreach provider role + @@ -382,7 +382,7 @@ - presenter role + @@ -391,7 +391,7 @@ - presenting process + @@ -416,7 +416,7 @@ - reviewer role + @@ -425,7 +425,7 @@ - teacher role + diff --git a/rdf/tbox/filegraph/bfo.owl b/rdf/tbox/filegraph/bfo.owl index 7bdff289..5b1d8df4 100644 --- a/rdf/tbox/filegraph/bfo.owl +++ b/rdf/tbox/filegraph/bfo.owl @@ -12,7 +12,7 @@ - realizable entity + (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] diff --git a/rdf/tbox/filegraph/classes-additional.owl b/rdf/tbox/filegraph/classes-additional.owl index ee0b1f7c..1fe000e8 100644 --- a/rdf/tbox/filegraph/classes-additional.owl +++ b/rdf/tbox/filegraph/classes-additional.owl @@ -25,7 +25,7 @@ - research opportunity + @@ -57,7 +57,7 @@ - Event + @@ -101,7 +101,7 @@ - Academic Article + @@ -121,7 +121,7 @@ - Article + @@ -147,7 +147,7 @@ - Audio Document + @@ -161,7 +161,7 @@ - Audio-Visual Document + @@ -175,7 +175,7 @@ - Book + @@ -213,7 +213,7 @@ - Book Section + @@ -239,7 +239,7 @@ - Collected Document + @@ -253,7 +253,7 @@ - Collection + @@ -268,7 +268,7 @@ - Conference + @@ -282,8 +282,8 @@ - document (IAO) - Document + + @@ -321,7 +321,7 @@ - Document Part + @@ -347,7 +347,7 @@ - Document Status + @@ -355,7 +355,7 @@ - Edited Book + @@ -381,7 +381,7 @@ - Image + @@ -390,7 +390,7 @@ - Journal + @@ -404,7 +404,7 @@ - Patent + @@ -424,7 +424,7 @@ - Periodical + @@ -450,7 +450,7 @@ - Proceedings + @@ -458,7 +458,7 @@ - Report + @@ -472,7 +472,7 @@ - Series + @@ -492,7 +492,7 @@ - Thesis + @@ -512,7 +512,7 @@ - Thesis Degree + @@ -520,7 +520,7 @@ - Website + @@ -534,7 +534,7 @@ - Bibliographic Information Source + A source of information about bibliographic citations, such as Google Scholar, Web of Science or Scopus. @@ -543,7 +543,7 @@ - Global Citation Count + The number of times a work has been cited globally, as determined from a particular bibliographic information source on a particular date. @@ -552,7 +552,7 @@ - Academic Degree + @@ -572,7 +572,7 @@ - Academic Department + @@ -594,7 +594,7 @@ - Advising Relationship + @@ -615,7 +615,7 @@ - Authorship + @@ -632,7 +632,7 @@ - Award or Honor Receipt + @@ -665,7 +665,7 @@ - Blog Posting + @@ -680,7 +680,7 @@ - Catalog + @@ -701,7 +701,7 @@ - College + @@ -717,7 +717,7 @@ - Conference Paper + @@ -732,7 +732,7 @@ - Course + @@ -746,7 +746,7 @@ - Credential + @@ -772,7 +772,7 @@ - Database + @@ -786,7 +786,7 @@ - Educational Process + @@ -809,7 +809,7 @@ - Event Series + @@ -841,7 +841,7 @@ - Funding Organization + @@ -857,7 +857,7 @@ - Grant + @@ -883,7 +883,7 @@ - Information Resource + @@ -917,7 +917,7 @@ - Issued Credential + @@ -955,7 +955,7 @@ - Laboratory + @@ -969,7 +969,7 @@ - Position + @@ -991,7 +991,7 @@ - Project + @@ -1018,7 +1018,7 @@ - Role + @@ -1048,7 +1048,7 @@ - Software + @@ -1065,7 +1065,7 @@ - University + @@ -1079,7 +1079,7 @@ - Working Paper + @@ -1094,7 +1094,7 @@ - Agent + @@ -1117,7 +1117,7 @@ - Organization + @@ -1149,7 +1149,7 @@ - Person + diff --git a/rdf/tbox/filegraph/clinical.owl b/rdf/tbox/filegraph/clinical.owl index 158aa2d8..b55edc1e 100644 --- a/rdf/tbox/filegraph/clinical.owl +++ b/rdf/tbox/filegraph/clinical.owl @@ -98,7 +98,7 @@ - human study + A clinical trial. OCRe @@ -114,7 +114,7 @@ - clinical trial + @@ -137,7 +137,7 @@ - phase (ocre) + Phase describes the level of a trial required of drugs before (and after) they are routinely used in clinical practice: - Phase I trials assess toxic effects on humans (not many people participate in them, and usually without controls); @@ -155,7 +155,7 @@ The concept of phase is not applicable to trials studying certain interventions - phase 0 + A Phase 0 trial is an exploratory trial involving very limited human exposure, with no therapeutic or diagnostic intent (e.g., screening study, microdose study). [http://prsinfo.clinicaltrials.gov/definitions.html] Simona @@ -166,7 +166,7 @@ The concept of phase is not applicable to trials studying certain interventions - phase 1 + A Phase I trial assesses toxic effects on humans (not many people participate, and usually without controls) [Glossary of Terms in The Cochrane Collaboration] Simona @@ -177,7 +177,7 @@ The concept of phase is not applicable to trials studying certain interventions - phase 2 + A Phase ll trial assesses therapeutic benefit (usually involving a few hundred people, usually with controls, but not always) [Glossary of Terms in The Cochrane Collaboration] Simona @@ -188,7 +188,7 @@ The concept of phase is not applicable to trials studying certain interventions - phase 3 + A Phase III trial compares the new treatment against standard (or placebo) treatment (usually a full randomised controlled trial). At this point, a drug can be approved for community use. [Glossary of Terms in The Cochrane Collaboration] @@ -200,7 +200,7 @@ randomised controlled trial). At this point, a drug can be approved for communit - phase 4 + A Phase IV study monitors a new treatment in the community, often to evaluate longterm safety and effectiveness. [Glossary of Terms in The Cochrane Collaboration] Simona @@ -211,7 +211,7 @@ randomised controlled trial). At this point, a drug can be approved for communit - single group study + A single group study is an interventional study that has only a single allocation group and no contemporaneuos comparison group. A study in which an individual acts has his/her own comparison does not fall into this category, since an individual is not a group. @@ -224,7 +224,7 @@ A study in which an individual acts has his/her own comparison does not fall int - clinical role + A role of observing or treating patients diff --git a/rdf/tbox/filegraph/contact-vcard.owl b/rdf/tbox/filegraph/contact-vcard.owl index ebcf83b0..83bbe23c 100644 --- a/rdf/tbox/filegraph/contact-vcard.owl +++ b/rdf/tbox/filegraph/contact-vcard.owl @@ -452,7 +452,7 @@ - acquaintance + @@ -461,7 +461,7 @@ - address + @@ -537,7 +537,7 @@ - addressing + @@ -600,7 +600,7 @@ - agent (vcard c) + @@ -609,7 +609,7 @@ - calendar + @@ -647,7 +647,7 @@ - calendar busy (vcard c) + @@ -672,7 +672,7 @@ Was called FBURI in vCard - calendar link (vcard c) + @@ -697,7 +697,7 @@ Was called CALURI in vCard. - calendar request (vcard c) + @@ -722,7 +722,7 @@ Was called CALADRURI in vCard - category (vcard c) + @@ -746,7 +746,7 @@ Was called CALADRURI in vCard - cell + Also called mobile telephone @@ -756,7 +756,7 @@ Was called CALADRURI in vCard - child + @@ -765,7 +765,7 @@ Was called CALADRURI in vCard - code (vcard c) + Contains all the Code related Classes that are used to indicate vCard Types @@ -774,7 +774,7 @@ Was called CALADRURI in vCard - colleague + @@ -783,7 +783,7 @@ Was called CALADRURI in vCard - communication + @@ -846,7 +846,7 @@ Was called CALADRURI in vCard - contact (vcard c) + @@ -855,7 +855,7 @@ Was called CALADRURI in vCard - coresident + @@ -864,7 +864,7 @@ Was called CALADRURI in vCard - coworker + @@ -873,7 +873,7 @@ Was called CALADRURI in vCard - crush + @@ -882,7 +882,7 @@ Was called CALADRURI in vCard - date + @@ -891,7 +891,7 @@ Was called CALADRURI in vCard - email (vcard c) + @@ -915,7 +915,7 @@ Was called CALADRURI in vCard - emergency + @@ -924,7 +924,7 @@ Was called CALADRURI in vCard - explanatory + @@ -987,7 +987,7 @@ Was called CALADRURI in vCard - fax + @@ -996,7 +996,7 @@ Was called CALADRURI in vCard - female (vcard) + @@ -1005,7 +1005,7 @@ Was called CALADRURI in vCard - formatted name + @@ -1029,7 +1029,7 @@ Was called CALADRURI in vCard - friend + @@ -1038,7 +1038,7 @@ Was called CALADRURI in vCard - gender (vcard c) + @@ -1047,7 +1047,7 @@ Was called CALADRURI in vCard - geo (vcard c) + @@ -1071,7 +1071,7 @@ Was called CALADRURI in vCard - geographical + @@ -1094,7 +1094,7 @@ Was called CALADRURI in vCard - group (vcard c) + @@ -1118,7 +1118,7 @@ Was called CALADRURI in vCard - home + This implies that the property is related to an individual's personal life @@ -1128,7 +1128,7 @@ Was called CALADRURI in vCard - identification + @@ -1191,7 +1191,7 @@ Was called CALADRURI in vCard - individual + @@ -1255,7 +1255,7 @@ Was called CALADRURI in vCard - messaging + @@ -1280,7 +1280,7 @@ Was called IMPP in vCard. - key (vcard c) + @@ -1303,7 +1303,7 @@ Was called IMPP in vCard. - kin + @@ -1312,7 +1312,7 @@ Was called IMPP in vCard. - vcard kind + @@ -1412,7 +1412,7 @@ Was called IMPP in vCard. - language + @@ -1436,7 +1436,7 @@ Was called IMPP in vCard. - location (vcard c) + Defines all the properties required to be a Location @@ -1446,7 +1446,7 @@ Was called IMPP in vCard. - logo (vcard c) + @@ -1470,7 +1470,7 @@ Was called IMPP in vCard. - male (vcard c) + @@ -1479,7 +1479,7 @@ Was called IMPP in vCard. - me + @@ -1488,7 +1488,7 @@ Was called IMPP in vCard. - met + @@ -1497,7 +1497,7 @@ Was called IMPP in vCard. - muse + @@ -1506,7 +1506,7 @@ Was called IMPP in vCard. - name + @@ -1582,7 +1582,7 @@ Was called IMPP in vCard. - neighbor + @@ -1591,7 +1591,7 @@ Was called IMPP in vCard. - nickname + @@ -1615,7 +1615,7 @@ Was called IMPP in vCard. - none + @@ -1624,7 +1624,7 @@ Was called IMPP in vCard. - note (vcard c) + @@ -1648,7 +1648,7 @@ Was called IMPP in vCard. - organization (vcard c) + Defines all the properties required to be an Organization To specify the organizational name associated with the vCard @@ -1659,7 +1659,7 @@ Was called IMPP in vCard. - organization name (vcard c) + @@ -1682,7 +1682,7 @@ Was called IMPP in vCard. - organizational unit name (vcard c) + @@ -1705,7 +1705,7 @@ Was called IMPP in vCard. - organisational + @@ -1768,7 +1768,7 @@ Was called IMPP in vCard. - other + @@ -1777,7 +1777,7 @@ Was called IMPP in vCard. - pager + @@ -1786,7 +1786,7 @@ Was called IMPP in vCard. - parent + @@ -1795,7 +1795,7 @@ Was called IMPP in vCard. - photo (vcard c) + @@ -1819,7 +1819,7 @@ Was called IMPP in vCard. - related (vcard c) + @@ -1843,7 +1843,7 @@ Was called IMPP in vCard. - relation type + @@ -1854,7 +1854,7 @@ Was called IMPP in vCard. - security + @@ -1905,7 +1905,7 @@ Was called IMPP in vCard. - sibling + @@ -1914,7 +1914,7 @@ Was called IMPP in vCard. - sound (vcard c) + @@ -1938,7 +1938,7 @@ Was called IMPP in vCard. - spouse + @@ -1947,7 +1947,7 @@ Was called IMPP in vCard. - sweetheart + @@ -1956,7 +1956,7 @@ Was called IMPP in vCard. - telephone (vcard c) + @@ -1979,7 +1979,7 @@ Was called IMPP in vCard. - phone + @@ -1988,7 +1988,7 @@ Was called IMPP in vCard. - text + Also called sms telephone @@ -1998,7 +1998,7 @@ Was called IMPP in vCard. - text phone + @@ -2007,7 +2007,7 @@ Was called IMPP in vCard. - time zone + @@ -2031,7 +2031,7 @@ Was called IMPP in vCard. - title (vcard c) + @@ -2055,7 +2055,7 @@ Was called IMPP in vCard. - type + This is called TYPE in vCard but renamed here to Context for less confusion (with types/class) @@ -2065,7 +2065,7 @@ Was called IMPP in vCard. - url (vcard c) + @@ -2089,7 +2089,7 @@ Was called IMPP in vCard. - f1000 link + F1000 is a place where faculty go to critique papers published in PubMed. Any given record in F1000 might have anywhere from one to dozens of reviews. @@ -2099,7 +2099,7 @@ Was called IMPP in vCard. - unknown + @@ -2108,7 +2108,7 @@ Was called IMPP in vCard. - video (vcard c) + @@ -2117,7 +2117,7 @@ Was called IMPP in vCard. - voice + @@ -2126,7 +2126,7 @@ Was called IMPP in vCard. - work (vcard c) + This implies that the property is related to an individual's work place diff --git a/rdf/tbox/filegraph/contact.owl b/rdf/tbox/filegraph/contact.owl index 3e9f2515..6cf85f61 100644 --- a/rdf/tbox/filegraph/contact.owl +++ b/rdf/tbox/filegraph/contact.owl @@ -47,7 +47,7 @@ - contact qualifier + @@ -56,7 +56,7 @@ - foaf profile + @@ -65,7 +65,7 @@ - contact + diff --git a/rdf/tbox/filegraph/data-properties.owl b/rdf/tbox/filegraph/data-properties.owl index a00b015b..068566ca 100644 --- a/rdf/tbox/filegraph/data-properties.owl +++ b/rdf/tbox/filegraph/data-properties.owl @@ -1069,7 +1069,7 @@ - is_template + The document can be used as a template for the creation of other documents. @@ -1080,7 +1080,7 @@ - user_defined_tag + A free text field for recording topics which relate to the resource. @@ -1090,7 +1090,7 @@ - patient_id + @@ -1101,7 +1101,7 @@ - health care provider id + @@ -1112,7 +1112,7 @@ - measurement_label + @@ -1120,7 +1120,7 @@ - has_inventory_number + An example inventory number can be in the form: 12345 Inventory identifier for the resource. PERSON: Melissa Haendel @@ -1153,7 +1153,7 @@ - has_restriction + A restriction on service availability, such as university or consortium affiliation, geographical location, professional certification, or other factors. PERSON: Melissa Haendel PERSON: Melissa Haendel @@ -1184,7 +1184,7 @@ - has_geographic_restriction + Any service limitation tied to geographically-defined areas such as metro areas, counties, states, or regions. PERSON: Melissa Haendel PERSON: Melissa Haendel @@ -1201,7 +1201,7 @@ - model_number + ABI 9000 Instrument model number, which may be a name, number, or both. PERSON: Melissa Haendel @@ -1217,7 +1217,7 @@ - lab_data_format + Current method or software used to inventory a lab's resources. Examples include Excel, index cards, FileMaker, 3-ring binder, etc. Excel spreadsheet PERSON: Melissa Haendel @@ -1240,7 +1240,7 @@ - version + PERSON: Melissa Haendel PERSON: Melissa Haendel Software edition, typically a numeral followed by a decimal and another numeral, such as 2.1. @@ -1262,7 +1262,7 @@ - has_accession_number + PERSON: Melissa Haendel PERSON: Melissa Haendel The accession number for a gene. @@ -1286,7 +1286,7 @@ - has_study_population + African american study population. Characteristics of the human population being studied. May include number, demographic or geographic information, inclusion or exclusion criteria, or other descriptive information. PERSON: Melissa Haendel @@ -1302,7 +1302,7 @@ - has_eligibility_requirment + A grade point average above 3.5 is an eligibility requirement. PERSON: Melissa Haendel PERSON: Melissa Haendel @@ -1318,7 +1318,7 @@ - abstract + http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html http://purl.org/dc/terms/ A summary of the resource. @@ -1330,7 +1330,7 @@ - asin + 020530902X Amazon standard identification number. Source: http://en.wikipedia.org/wiki/Amazon_Standard_Identification_Number. http://purl.org/ontology/bibo/ @@ -1343,8 +1343,8 @@ - chapter (bibo dp) - Title of the chapter (this individual) currently should be entered in the individual name (rdfs:label). Title of the book belongs on a separate Book individual related to the chapter via the core:partOf property (or its child property bibo:reproducedIn). The core:title field is deprecated and should no longer be used as of version 1.1 -- we will want to map rdfs:label to dc:title for query or linked data requests in the future + + http://purl.org/ontology/bibo/ An chapter number unstable @@ -1355,7 +1355,7 @@ - coden + CODEN became particularly common in the scientific community as a citation system for periodicals cited in technical- as well in chemistry-related publications and as a search tool in many bibliographic catalogues. Definition and description came from Wikipedia here: http://en.wikipedia.org/wiki/CODEN http://purl.org/ontology/bibo/ @@ -1368,7 +1368,7 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik - digital object identifier (doi) + http://purl.org/ontology/bibo/ stable Digital Object Identifier @@ -1379,7 +1379,7 @@ Definition and description came from Wikipedia here: http://en.wikipedia.org/wik - ean international-uniform code council (ean-ucc) 13 + Definition source: http://en.wikipedia.org/wiki/European_Article_Numbering-Uniform_Code_Council. The Uniform Code Council (UCC) was the Numbering Organization in the USA to administer and manage the EAN.UCC System. In 2005 the UCC changed its name to GS1 US. http://purl.org/ontology/bibo/ @@ -1392,7 +1392,7 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - edition + http://purl.org/ontology/bibo/ The name defining a special edition of a document. Normally its a literal value composed of a version number and words. stable @@ -1403,7 +1403,7 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - electronic international standard serial number (eissn) + eissn stands for Electronic International Standard Serial Number. source: http://www.definition-of.com/EISSN http://purl.org/ontology/bibo/ stable @@ -1415,7 +1415,7 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - gtin14 + http://en.wikipedia.org/wiki/Global_Trade_Item_Number. http://purl.org/ontology/bibo/ stable @@ -1427,7 +1427,7 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - identifier (bibo) + @@ -1435,7 +1435,7 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - international standard book number (isbn) 10 + http://en.wikipedia.org/wiki/Isbn. @@ -1444,7 +1444,7 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - international standard book number (isbn) 13 + source: http://en.wikipedia.org/wiki/Isbn. @@ -1453,7 +1453,7 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - international standard serial number (issn) + http://purl.org/ontology/bibo/ source: http://en.wikipedia.org/wiki/Issn stable @@ -1465,7 +1465,7 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - issue (bibo dp) + Bibo has the domain of bibo:issue as the class Issue, but an example on their site uses it with Article, referring to the issue number "4" @@ -1474,7 +1474,7 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - library of congress control number (lccn) + Source: http://en.wikipedia.org/wiki/Library_of_Congress_Control_Number. http://purl.org/ontology/bibo/ stable @@ -1486,7 +1486,7 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - locator + definition from: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html http://purl.org/ontology/bibo/ stable @@ -1498,7 +1498,7 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - number of pages + @@ -1506,7 +1506,7 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - number + Definition from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html @@ -1515,7 +1515,7 @@ The Uniform Code Council (UCC) was the Numbering Organization in the USA to admi - online computer library center (oclc) number + http://info-uri.info/registry/OAIHandler?verb=GetRecord&metadataPrefix=reg&identifier=info:oclcnum/. @@ -1530,7 +1530,7 @@ bibo has the domain of this property set to the union of Collection and Document - end page + http://purl.org/ontology/bibo/ stable Ending page number within a continuous page range. @@ -1541,7 +1541,7 @@ bibo has the domain of this property set to the union of Collection and Document - start page + http://purl.org/ontology/bibo/ stable Starting page number within a continuous page range. @@ -1552,7 +1552,7 @@ bibo has the domain of this property set to the union of Collection and Document - pubmed identifier + The PubMed ID (PMID) identifies a citation record (rather than full-text) in the PubMed database. It is not evidence of compliance with the NIH Public Access Policy, because it does not identify a full-text submission of any kind. http://purl.org/ontology/bibo/ stable @@ -1564,7 +1564,7 @@ bibo has the domain of this property set to the union of Collection and Document - name prefix + Mr; Ms; Mrs http://dictionary.reference.com/browse/prefix http://purl.org/ontology/bibo/ @@ -1577,7 +1577,7 @@ bibo has the domain of this property set to the union of Collection and Document - section + http://purl.org/ontology/bibo/ An section number Di Rado, Alicia. 1995. Trekking through college: Classes explore @@ -1591,7 +1591,7 @@ modern society using the world of Star trek. Los Angeles Times, March - short description + http://purl.org/ontology/bibo/ A short description of the resource. The idea here is that while dcterms:description may involve length descriptions, this for short (two or three word) descriptions that could go in a bibliographic entry. @@ -1603,7 +1603,7 @@ modern society using the world of Star trek. Los Angeles Times, March - sici + A sub property of identifier (http://en.wikipedia.org/wiki/SICI). http://purl.org/ontology/bibo/ Serial Item and Contribution Identifier @@ -1615,7 +1615,7 @@ modern society using the world of Star trek. Los Angeles Times, March - name suffix + Jr.; III;; M.D. http://purl.org/ontology/bibo/ stable @@ -1627,7 +1627,7 @@ modern society using the world of Star trek. Los Angeles Times, March - upc + http://purl.org/ontology/bibo/ source for public description: http://en.wikipedia.org/wiki/Universal_Product_Code. stable @@ -1639,7 +1639,7 @@ modern society using the world of Star trek. Los Angeles Times, March - uri + Definition from: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html @@ -1648,7 +1648,7 @@ modern society using the world of Star trek. Los Angeles Times, March - volume (bibo) + @@ -1656,7 +1656,7 @@ modern society using the world of Star trek. Los Angeles Times, March - has global count date + The date on which the global citation count of the cited entity was recorded from a named bibliographic information source. @@ -1665,7 +1665,7 @@ modern society using the world of Star trek. Los Angeles Times, March - has global count value + An integer defining the value of the global citation count of a cited entity recorded from a named bibliographic information source on a particular date. @@ -1675,7 +1675,7 @@ modern society using the world of Star trek. Los Angeles Times, March - abbreviation + A short form for an longer title or name. B.A. @@ -1685,7 +1685,7 @@ modern society using the world of Star trek. Los Angeles Times, March - published us classification class/subclass (ccl) code + @@ -1695,7 +1695,7 @@ modern society using the world of Star trek. Los Angeles Times, March - credits + @@ -1703,7 +1703,7 @@ modern society using the world of Star trek. Los Angeles Times, March - date/time + @@ -1712,7 +1712,7 @@ modern society using the world of Star trek. Los Angeles Times, March - era commons id + @@ -1721,7 +1721,7 @@ modern society using the world of Star trek. Los Angeles Times, March - keywords + conservation use one freetextKeyword assertion for each keyword or phrase. @@ -1734,7 +1734,7 @@ use one freetextKeyword assertion for each keyword or phrase. - direct costs + @@ -1742,7 +1742,7 @@ use one freetextKeyword assertion for each keyword or phrase. - has_monetary_amount + @@ -1750,7 +1750,7 @@ use one freetextKeyword assertion for each keyword or phrase. - has_value + @@ -1758,7 +1758,7 @@ use one freetextKeyword assertion for each keyword or phrase. - international classification (icl) code + The International classification(s) to which the published application has been assigned. @@ -1769,7 +1769,7 @@ use one freetextKeyword assertion for each keyword or phrase. - identifier (vivo) + @@ -1777,7 +1777,7 @@ use one freetextKeyword assertion for each keyword or phrase. - license number + @@ -1786,7 +1786,7 @@ use one freetextKeyword assertion for each keyword or phrase. - link uri + @@ -1795,7 +1795,7 @@ use one freetextKeyword assertion for each keyword or phrase. - local award id + core:localAwardId has a domain of core:Grant, and should be public since that's its public identifier for local use by OSP, accounting, department admins, and the PI @@ -1805,7 +1805,7 @@ use one freetextKeyword assertion for each keyword or phrase. - major field of degree + Information Science; Computer Science; Anthropology @@ -1814,7 +1814,7 @@ use one freetextKeyword assertion for each keyword or phrase. - middle name or initial + @@ -1822,7 +1822,7 @@ use one freetextKeyword assertion for each keyword or phrase. - nih manuscript submission system id + @@ -1834,7 +1834,7 @@ use one freetextKeyword assertion for each keyword or phrase. - outreach overview + My extension program consists of developing and reporting disease management strategies that are both economically and environmentally sound for fresh market vegetable production. We hope that some of this testing will result in practices adaptable for organic production. Used for a single narrative summary of outreach, typically covering a wide range of activities and time periods; use Outreach Provider Role for information on individual activities @@ -1845,7 +1845,7 @@ use one freetextKeyword assertion for each keyword or phrase. - overview + @@ -1854,7 +1854,7 @@ use one freetextKeyword assertion for each keyword or phrase. - patent number + source of definition: http://www.uspto.gov/main/glossary/#p . The following site has patent number formats: http://www.uspto.gov/patents/ebc/kindcodesum.jsp . @@ -1866,7 +1866,7 @@ use one freetextKeyword assertion for each keyword or phrase. - place of publication + @@ -1874,7 +1874,7 @@ use one freetextKeyword assertion for each keyword or phrase. - pubmed central id + A PMCID is a unique PubMed Central reference number, which is assigned to each full-text record made available A PMCID is a unique PubMed Central reference number, which is assigned to each full-text record made available in PubMed Central. The PMCID is issued shortly after the PI or author approves the PubMed Central formatted web version of the submission. @@ -1885,7 +1885,7 @@ use one freetextKeyword assertion for each keyword or phrase. - rank + this number indicates a position in a list @@ -1896,7 +1896,7 @@ use one freetextKeyword assertion for each keyword or phrase. - report identifier + @@ -1907,7 +1907,7 @@ use one freetextKeyword assertion for each keyword or phrase. - research overview + Used for a single narrative summary of research, typically covering a wide range of activities and time periods; use Researcher Role for information on individual activities @@ -1916,7 +1916,7 @@ use one freetextKeyword assertion for each keyword or phrase. - isi researcher id + RearcherID is a Thomson Reuters project where researchers have a place to manage and share their professional information. It will allow them to solve author identity issues while simultaneously adding dynamic citation metrics and collaboration networks to your personal profile. Definition source: http://isiwebofknowledge.com/researcherid/ @@ -1927,7 +1927,7 @@ Definition source: http://isiwebofknowledge.com/researcherid/ - scopus id + Home page for Scopus: http://www.scopus.com/home.url @@ -1938,7 +1938,7 @@ Definition source: http://isiwebofknowledge.com/researcherid/ - seating capacity + 55 definition modified from: source (http://en.wikipedia.org/wiki/Seating_capacity). @@ -1950,7 +1950,7 @@ Definition source: http://isiwebofknowledge.com/researcherid/ - sponsor award id + Has a domain of Grant. There is not a strong reason have this be publically visible, since most users would care more about the name of the sponsoring agency than its identifier, but it does no harm to be public. @@ -1964,7 +1964,7 @@ See also core:localAwardId. - supplemental information + @@ -1973,7 +1973,7 @@ See also core:localAwardId. - teaching overview + Used for a single narrative summary of teaching, typically covering a wide range of courses including for credit and non-credit teaching over multiple semesters; the "teaches" property links a person directly with an instance of a Semester Class, typically from an institutional database of record; then use Teacher Role for information about a person's role in non-credit teaching or their specific contribution to individual courses @@ -1983,7 +1983,7 @@ See also core:localAwardId. - total award amount + @@ -1991,7 +1991,7 @@ See also core:localAwardId. - institutional review board (irb) number + Every clinical trial in the United States must be approved and monitored by an Institutional Review Board (IRB). An IRB is an independent committee of physicians, statisticians, community advocates and others whose objective is to ensure that a clinical trial is ethical and the rights of study participants are protected. @@ -2000,7 +2000,7 @@ See also core:localAwardId. - national clinical trials (nct) number + ClinicalTrials.gov is an ICMJE-acceptable public registry, offering up-to-date information for locating clinical trials for a wide range of diseases and conditions. The U.S. National Institutes of Health (NIH), through its National Library of Medicine (NLM), developed this site in collaboration with the Food and Drug Administration (FDA), as a result of the FDA Modernization Act, which was passed into law in November 1997. This property should be publically visible since it is one of the principal identifiers in a national registry of clinical trials NCT00000419 @@ -2010,7 +2010,7 @@ See also core:localAwardId. - study population count + number of human participants in the study (trial). @@ -2019,7 +2019,7 @@ See also core:localAwardId. - additional name + @@ -2029,7 +2029,7 @@ See also core:localAwardId. - anniversary + The date of marriage, or equivalent, of the object the vCard represents @@ -2040,7 +2040,7 @@ See also core:localAwardId. - birthdate + To specify the birth date of the object the vCard represents @@ -2051,7 +2051,7 @@ See also core:localAwardId. - calendar busy (vcard dp) + @@ -2061,7 +2061,7 @@ See also core:localAwardId. - calendar link (vcard dp) + @@ -2071,7 +2071,7 @@ See also core:localAwardId. - calendar request (vcard dp) + @@ -2081,7 +2081,7 @@ See also core:localAwardId. - category (vcard dp) + @@ -2091,7 +2091,7 @@ See also core:localAwardId. - country (vcard dp) + @@ -2101,7 +2101,7 @@ See also core:localAwardId. - email (vcard dp) + @@ -2111,7 +2111,7 @@ See also core:localAwardId. - has last name + Called Family Name in vCard @@ -2122,7 +2122,7 @@ See also core:localAwardId. - has format name + @@ -2132,7 +2132,7 @@ See also core:localAwardId. - gender (vcard dp) + To specify the components of the sex and gender identity of the object the vCard represents. To enable other Gender/Sex codes to be used, this dataproperty has range URI. The vCard gender code classes are defined under Code/Gender @@ -2144,7 +2144,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - geo (vcard dp) + Must use the geo URI scheme RFC5870 @@ -2155,7 +2155,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - first name + called Given Name invCard @@ -2166,7 +2166,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - has prefix name + Called Honorific Prefix in vCard @@ -2177,7 +2177,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - honorific suffix name + @@ -2187,7 +2187,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - instant message + @@ -2197,7 +2197,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - key (vcard dp) + @@ -2207,7 +2207,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - has language (vcard dp) + Use 2 char language code from RFC5646 @@ -2217,7 +2217,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - locality + @@ -2227,7 +2227,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - logo (vcard dp) + @@ -2237,7 +2237,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - nick name + @@ -2247,7 +2247,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - note (vcard dp) + @@ -2257,7 +2257,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - organization name (vcard dp) + @@ -2267,7 +2267,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - organizational unit name (vcard dp) + @@ -2277,7 +2277,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - photo (vcard dp) + @@ -2287,7 +2287,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - postal code + @@ -2297,7 +2297,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - product id + @@ -2306,7 +2306,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - region + @@ -2316,7 +2316,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - related (vcard dp) + @@ -2326,7 +2326,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - revision + @@ -2335,7 +2335,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - role (vcard) + @@ -2345,7 +2345,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - sort as + @@ -2354,7 +2354,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - sound (vcard dp) + @@ -2364,7 +2364,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - source + @@ -2373,7 +2373,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - street address + @@ -2383,7 +2383,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - telephone (vcard dp) + @@ -2392,7 +2392,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - timezone + @@ -2402,7 +2402,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - title (vcard dp) + @@ -2412,7 +2412,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - uid + To specify a value that represents a globally unique identifier corresponding to the entity associated with the vCard @@ -2422,7 +2422,7 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th - url (vcard dp) + diff --git a/rdf/tbox/filegraph/date-time.owl b/rdf/tbox/filegraph/date-time.owl index 7fa7fdfd..051be781 100644 --- a/rdf/tbox/filegraph/date-time.owl +++ b/rdf/tbox/filegraph/date-time.owl @@ -46,7 +46,7 @@ - academic term + An explicit individual academic term, quarter, or semester rather than the generic fall, spring or summer semester. @@ -56,7 +56,7 @@ - academic year + An explicit individual period considered by an academic institution to be its primary academic cycle. @@ -66,7 +66,7 @@ - date/time interval + a specific period or duration, defined by (optional) start and end date/times. @@ -75,7 +75,7 @@ - date/time value instance + A date and/or time @@ -95,7 +95,7 @@ - yearmonthdayvalue + @@ -103,7 +103,7 @@ - yearmonthdaytimevalue + @@ -111,7 +111,7 @@ - yearmonthvalue + @@ -119,7 +119,7 @@ - yearvalue + diff --git a/rdf/tbox/filegraph/dateTimeValuePrecision.owl b/rdf/tbox/filegraph/dateTimeValuePrecision.owl index 19450a55..5df2c235 100644 --- a/rdf/tbox/filegraph/dateTimeValuePrecision.owl +++ b/rdf/tbox/filegraph/dateTimeValuePrecision.owl @@ -52,7 +52,7 @@ - YearMonthDayValue + @@ -60,7 +60,7 @@ - YearMonthDayTimeValue + @@ -68,7 +68,7 @@ - YearMonthValue + @@ -76,7 +76,7 @@ - YearValue + diff --git a/rdf/tbox/filegraph/documentStatus.owl b/rdf/tbox/filegraph/documentStatus.owl index d74eac11..b3b4fbb2 100644 --- a/rdf/tbox/filegraph/documentStatus.owl +++ b/rdf/tbox/filegraph/documentStatus.owl @@ -50,34 +50,34 @@ --> - unpublished + - rejected + - draft + - peer reviewed + &nbsp;Peer review is the process by which articles are chosen to be included in a refereed journal. An editorial board consisting of experts in the same field as the author review the article and decide if it is authoritative enough for publication. - in press + Document to be published - accepted + Accepted for publication after peer reviewing - submitted + - invited + - published + Published document diff --git a/rdf/tbox/filegraph/education.owl b/rdf/tbox/filegraph/education.owl index 644bc1ad..6c5dee04 100644 --- a/rdf/tbox/filegraph/education.owl +++ b/rdf/tbox/filegraph/education.owl @@ -76,7 +76,7 @@ - funding role + A role inhering in a person or organization that is realized when the bearer participates in providing funding to a person or an organization for academic or business purposes. PERSON: Nicole Vasilevsky @@ -90,7 +90,7 @@ - educator role + A role inhering in a person or organization that is realized when the bearer participates in providing education to a student or group of students. A teacher. @@ -104,7 +104,7 @@ - research opportunity + A planned process carried out by a person or organization with the objective of performing research. An offering through an ongoing program or single request of research support: internships, positions, financial awards or other forms of tangible or intangible support PERSON: Nicole Vasilevsky @@ -119,7 +119,7 @@ - us resident role + A role that inheres in a person who maintains residency in the United states. PERSON: Nicole Vasilevsky @@ -132,7 +132,7 @@ - us citizen role + A US resident role that inheres in an individual that is a legally recognized as a member of a state, with associated rights and obligations. PERSON: Nicole Vasilevsky @@ -145,7 +145,7 @@ - non-us citizen + A US resident role that inheres in an individual who is not a legally recognized subject or national of the United States. PERSON: Nicole Vasilevsky @@ -158,7 +158,7 @@ - permanent resident role + An role that inheres in an individual who is not a citizen but who legally resides in another nation on a permanent or extended basis. PERSON: Nicole Vasilevsky @@ -171,7 +171,7 @@ - non-permanent resident role + A non-US citizen role that inheres in an individual who is residing in a country, but is neither a citizen nor a permanent resident. PERSON: Nicole Vasilevsky @@ -184,7 +184,7 @@ - student role + A college student. A role inhering in a person that is realized when the bearer participates a course of study, as in a school, college, university, etc. @@ -198,7 +198,7 @@ - undergraduate student role + A college student. A student role inhering in a person that is realized when the bearer participates in a course of study at a college, university, etc. in pursuit of an associate or bachelor degree. @@ -212,7 +212,7 @@ - graduate student role + A PhD student at a university. A student role inhering in a person that is realized when the bearer participates a course of study at a university or institution in pursuit of an graduate or professional degree. @@ -226,7 +226,7 @@ - high school student role + A freshman in high school. A student role inhering in a person that is realized when the bearer participates in a course of study at a secondary learning institution. @@ -240,7 +240,7 @@ - employee role + A role inhering in a person that is realized when the bearer participates in an occupation by which a person earns a living or spends their time. An employee at a university. @@ -254,7 +254,7 @@ - faculty role + A professor at a university. An employee role inhering in a person that is realized when the bearer participates in the teaching and/or administrative force of a university, college, or school. @@ -268,7 +268,7 @@ - staff role + A research technician in a lab. An employee role inhering in a person that is realized when the bearer is employed by an employer. @@ -282,7 +282,7 @@ - post-baccalaureate trainee + A student role inhering in a person that is realized when the bearer participates in a post-baccalaureate training program in pursuit of an additional bachelor degree or new or additional training in a particular field. PERSON: Nicole Vasilevsky @@ -295,7 +295,7 @@ - post-graduate student trainee role + A post-doctoral fellow. A student role inhering in a person that is realized when the bearer participates in a post-graduate training program in pursuit of new or additional training in a particular field, such as a post-doctoral fellowship. @@ -309,7 +309,7 @@ - regulatory role + GROUP: Role branch OBI, CDISC @@ -325,7 +325,7 @@ - advising relationship + A dual relationship of one person being advised or mentored by another person, typically including start and end dates @@ -335,7 +335,7 @@ - certification + An issued certificate see also core:Certificate @@ -346,7 +346,7 @@ - educational process + @@ -354,7 +354,7 @@ - faculty mentoring relationship + An advisory relationship in which one faculty member mentors another faculty member. @@ -364,7 +364,7 @@ - graduate advising relationship + An advisory relationship in which a professor advises a graduate student. @@ -374,7 +374,7 @@ - internship + Typically a student or a recent graduate undergoing supervised practical training. @@ -384,7 +384,7 @@ - issued credential + @@ -393,7 +393,7 @@ - licensure + A granted license, which gives a 'permission to practice.' A granted license, which gives a 'permission to practice.' Such licenses are usually issued in order to regulate some activity that is deemed to be dangerous or a threat to the person or the public or which involves a high level of specialized skill. See also core:License. @@ -404,7 +404,7 @@ - medical residency + Residency is a stage of graduate medical training. @@ -414,7 +414,7 @@ - postdoc or fellow advising relationship + An advisory relationship in which the advisee is a Postdoc or Fellow. @@ -424,7 +424,7 @@ - postdoctoral training + Postdoctoral research is academic or scholarly research conducted by a person who has completed his or her doctoral studies, normally within the following five years. It is intended to further deepen expertise in a specialist subject. @@ -440,7 +440,7 @@ - undergraduate advising relationship + An advisory relationship in which a professor advises an undergraduate student. diff --git a/rdf/tbox/filegraph/event.owl b/rdf/tbox/filegraph/event.owl index b0b2e270..2b4f0583 100644 --- a/rdf/tbox/filegraph/event.owl +++ b/rdf/tbox/filegraph/event.owl @@ -59,7 +59,7 @@ - event + Only use if no specific subclasses of event:Event are appropriate. Something that happens at a given place and time. This class will also display instances of subclasses under Event, e.g. Philosophy Department Discussion Club; 2009 Racker Lecture; screening of a documentary. In addition to a location in space and time, an event may have any or all the following qualities: actively participating agents, passive factors, work products. Also, it may be in a virtual space or part of a series such as a lecture series. @@ -80,7 +80,7 @@ The previous short definition was: "An arbitrary classification of a space/ - attendee role + A role of attending an Event or EventSeries @@ -89,7 +89,7 @@ The previous short definition was: "An arbitrary classification of a space/ - competition + An occasion on which a winner is selected from among two or more contestants. Intel Talent Search; poetry contest @@ -101,7 +101,7 @@ The previous short definition was: "An arbitrary classification of a space/ - conference series + An organized series of a meeting for consultation or discussion. For individual, separate conferences, use conference instead. core:ConferenceSeries and core:SeminarSeries are very similar. @@ -112,7 +112,7 @@ The previous short definition was: "An arbitrary classification of a space/ - event series + A generic class which may include a conference series, a course section, a seminar series, or a workshop series. When possible, use one of these more specific classes. Only use if no specific subclasses of core:EventSeries desribe the activity. Two or more events that occur at different times and are connected to each other. @@ -123,7 +123,7 @@ The previous short definition was: "An arbitrary classification of a space/ - exhibit + The showing of an object or a collection of objects, in an organized manner. @@ -133,7 +133,7 @@ The previous short definition was: "An arbitrary classification of a space/ - meeting + A gathering of people for a defined purpose, not necessarily public or announced @@ -143,7 +143,7 @@ The previous short definition was: "An arbitrary classification of a space/ - organizer role + A role of organizing @@ -152,7 +152,7 @@ The previous short definition was: "An arbitrary classification of a space/ - presentation + Encompasses talk, speech, lecture, slide lecture, conference presentation @@ -162,7 +162,7 @@ The previous short definition was: "An arbitrary classification of a space/ - presenter role + A role of presenting information Are we assuming that a PresenterRole is in a Presentation? Or could you have a PresenterRole in, say, a committee? @@ -172,7 +172,7 @@ The previous short definition was: "An arbitrary classification of a space/ - seminar series + An organized series of a meeting for an exchange of ideas, typically put on by a department or center. Applied Microeconomics Seminars; Future of Rural New York Seminar Series @@ -184,7 +184,7 @@ The previous short definition was: "An arbitrary classification of a space/ - workshop series + An organized series of workshop events, whether repetitions of the same workshop or multiple different workshops. Use workshop for individual events. diff --git a/rdf/tbox/filegraph/geo-political.owl b/rdf/tbox/filegraph/geo-political.owl index 18805fb0..115b7009 100644 --- a/rdf/tbox/filegraph/geo-political.owl +++ b/rdf/tbox/filegraph/geo-political.owl @@ -747,7 +747,7 @@ - group (geo) + @@ -783,7 +783,7 @@ - organization (geo) + @@ -800,7 +800,7 @@ - self governing + @@ -1081,7 +1081,7 @@ - continent + A large contiguous landmass that is at least partially surrounded by water, together with any islands on its continental shelf. Short Definition take from http://en.wiktionary.org/wiki/continent. @@ -1093,7 +1093,7 @@ - country (vivo) + Afghanistan; Antigua and Barbuda; Cameroon; Iceland; Jamaica; Nigeria; United States of America An area of land distinguished by its political autonomy. Politically independent territories. @@ -1105,7 +1105,7 @@ - county + Alachua; Baker; Bradford; Kenora; Ottawa; Waterloo Short Definition modified from the one found here: http://www.thefreedictionary.com/county. @@ -1123,7 +1123,7 @@ - geopolitical entity + A geographical area which is associated with some sort of political structure. Short definition obtained here: http://en.wiktionary.org/wiki/geopolitical_entity. @@ -1135,7 +1135,7 @@ - state or province + Minnesota; Michigan; Indiana; New York; Quebec; Manitoba; Ontario One of a number of areas or communities having their own governments and forming a federation under a sovereign government, as in the US. @@ -1147,7 +1147,7 @@ - subnational region + Boroughs; townships; districts; the Midwest For example, the Midwest, northeast U.S. @@ -1160,7 +1160,7 @@ - transnational region + Any region that goes beyond national boundaries and does not fit into any subclass of core:TransnationalRegion. None as yet. diff --git a/rdf/tbox/filegraph/location.owl b/rdf/tbox/filegraph/location.owl index c0f3c5b1..19511532 100644 --- a/rdf/tbox/filegraph/location.owl +++ b/rdf/tbox/filegraph/location.owl @@ -47,7 +47,7 @@ - building + Building that provides a particular service or is used for a particular activity. Enter building name. If the building's name is a number (as in many governmental organizations such as national laboratories and military bases), then enter it. Do not confuse with the number that appears in a postal address. @@ -59,7 +59,7 @@ - campus + Cornell Ithaca; Cornell Geneva; Cornell New York City; Cornell Qatar Definition taken from dictionary.com (http://dictionary.reference.com/browse/campus). @@ -71,7 +71,7 @@ - facility + Distinct from the organization that runs it; e.g., a laboratory may be an organization but may be run by another organization and only consist of facilities housing equipment or services. Can be a building or place that provides a particular service or is used for a particular activity. Use the specific Building or Room whenever possible. Short definition from http://dictionary.reference.com/browse/facility. Something designed, built, installed, etc., to serve a specific function or activity affording a convenience or service. Use subclasses of core:Facility subclasses instead of this class if possible @@ -82,7 +82,7 @@ - geographic location + A location having coordinates in geographic space. Removed the word "stable" because disputed territories from geopolitical.owl are included. This could imply that the geographic coordinates could change. I've also copied this definition to core:Geographic Location. I think core:Geographic Location and core:Geographic Region are both the same and only one is needed. There is also geopolitical.owl:geographical_region which further causes confusion. @@ -94,7 +94,7 @@ - geographic region + A location having coordinates in geographic space. Removed the word "stable" because disputed territories from geopolitical.owl are included. This could imply that the geographic coordinates could change. This definition was originally in core:Geographic Location. I simply copied the definition from there. I think core:Geographic Location and core:Geographic Region are both the same and only one is needed. There is also geopolitical.owl:geographical_region which further causes confusion. @@ -112,7 +112,7 @@ - location + It's anticipated that the subclasses will be used when classifying items. And, all locations can be viewable via this class. Top level of all location classes. Use subclasses of core:Location when classsifying items. @@ -123,7 +123,7 @@ - populated place + Either city or town - a thickly populated area having fixed boundaries and certain local powers of government. @@ -133,7 +133,7 @@ - room + 100 Caldwell Hall; 114 Martha Van Rensselaer (Rushmore Conference Room) Enter room number of name. diff --git a/rdf/tbox/filegraph/object-properties.owl b/rdf/tbox/filegraph/object-properties.owl index 954d2661..86b232a5 100644 --- a/rdf/tbox/filegraph/object-properties.owl +++ b/rdf/tbox/filegraph/object-properties.owl @@ -124,7 +124,7 @@ - has_contact_info + @@ -133,7 +133,7 @@ - contact_info_for + @@ -143,7 +143,7 @@ - context_for + @@ -152,7 +152,7 @@ - has_context + @@ -160,7 +160,7 @@ - url_link_for + @@ -169,7 +169,7 @@ - has_url_link + @@ -177,7 +177,7 @@ - has contact agent + @@ -186,7 +186,7 @@ - part_of + @@ -195,7 +195,7 @@ - has_part + @@ -203,7 +203,7 @@ - provides_access_to + An access service that provides access to a flow cytometer. Instruments, reagents, organisms, or software for which the service provides access. PERSON: Melissa Haendel @@ -229,7 +229,7 @@ - uses + Here there are things to be fixed (for instance a service can use a technique...) Microsoft powerpoint is commonly used in research laboratories to prepare presentations. PERSON: Melissa Haendel @@ -255,7 +255,7 @@ - has_expertise + Brian Druker has expertise in cancer research. PERSON: Melissa Haendel PERSON: Melissa Haendel @@ -271,7 +271,7 @@ - has_manufacturer + Organization or person that created the resource. PERSON: Melissa Haendel PERSON: Melissa Haendel @@ -296,7 +296,7 @@ - provides_service + A core lab providing cell sorting to individual labs. PERSON: Melissa Haendel PERSON: Melissa Haendel @@ -319,7 +319,7 @@ - specifies_the_use_of + A protocol can specify the use of a flow cytometer. Instruments, techniques, reagents, organisms, or software that are referenced in a protocol. PERSON: Melissa Haendel @@ -346,7 +346,7 @@ - used_by + A laboratory uses Microsoft Word. Laboratory that uses the protocol or software. PERSON: Melissa Haendel @@ -370,7 +370,7 @@ - has_input_type + Imaging processing software that requires .jpg format files for analysis. PERSON: Carlo Torniai PERSON: Melissa Haendel @@ -393,7 +393,7 @@ - has_output_type + Microsoft Excel arranges and saves data in .xlsx format. PERSON: Carlo Torniai PERSON: Melissa Haendel @@ -409,7 +409,7 @@ - achieves_objective + ImageJ software measures characteristics of digital images. PERSON: Carlo Torniai PERSON: Melissa Haendel @@ -425,7 +425,7 @@ - service_provided_by + A core laboratory provides a service. Organization or laboratory performing the service. PERSON: Melissa Haendel @@ -449,7 +449,7 @@ - performs + A cancer researcher performs apoptosis assays. PERSON: Melissa Haendel PERSON: Melissa Haendel @@ -471,7 +471,7 @@ - is_performed_by + Confocal microscopy is performed by a confocal core laboratory. PERSON: Melissa Haendel PERSON: Melissa Haendel @@ -495,7 +495,7 @@ - has_documentation + An antibody has documentation describing attributes of the antibody. Document that contains relevant resource information. PERSON: Melissa Haendel @@ -525,7 +525,7 @@ - realizes_protocol + A sequencing protocol used for next generation sequencing. PERSON: Melissa Haendel PERSON: Melissa Haendel @@ -549,7 +549,7 @@ - uses_software + PERSON: Melissa Haendel PERSON: Melissa Haendel Placeholder needs to be redesign @@ -570,7 +570,7 @@ - related_technique + Flow cytometry is a related technique for a flow cytometer instrument. Method in which the resource can be used. PERSON: Melissa Haendel @@ -604,7 +604,7 @@ - used_to_study + A study of hibernation in bears. Biological process studied in the organism. PERSON: Melissa Haendel @@ -621,7 +621,7 @@ - has_residency_requirement + A research opportunity requires applicants to be US citizens. PERSON: Melissa Haendel PERSON: Melissa Haendel @@ -638,7 +638,7 @@ - related_research_project + A research project studying breast cancer. PERSON: Melissa Haendel PERSON: Melissa Haendel @@ -655,7 +655,7 @@ - related_biological_specimen + A breast cancer specimen. Biological specimen collected as part of the research project. PERSON: Melissa Haendel @@ -672,7 +672,7 @@ - has_preparation_technique + PERSON: Melissa Haendel PERSON: Melissa Haendel Paraffin embedding of tissue. @@ -690,7 +690,7 @@ - has_phase + PERSON: Melissa Haendel PERSON: Melissa Haendel Phase 1 clinical trial. @@ -706,7 +706,7 @@ - performs_human_study + Human study performed by the organization. PERSON: Melissa Haendel PERSON: Melissa Haendel @@ -724,7 +724,7 @@ - human_study_performed_by + Jackson State University performs human studies on heart disease. Organization that performs the human study. PERSON: Melissa Haendel @@ -742,7 +742,7 @@ - has_format + @@ -752,7 +752,7 @@ - has_software_license + Is a legal instrument (usually by way of contract law) governing the usage or redistribution of software. PERSON: Scott Hoffmann http://en.wikipedia.org/wiki/Software_license @@ -766,7 +766,7 @@ - objective_achieved_by_operation + Links an objective to a software operation whise execution achieves the objective. Is different from OBI:objective_achieved_by which links an objective to the process that achieves it. PERSON:Matthew Brush PERSON:Matthew Brush @@ -784,7 +784,7 @@ objective_achieved_by some ('software/algorithm execution' and (specif - has measurement unit label + @@ -794,7 +794,7 @@ objective_achieved_by some ('software/algorithm execution' and (specif - is about + 7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive. We will try to build it back up by elaborating the various subproperties that are more precisely defined. @@ -813,7 +813,7 @@ Some currently missing phenomena that should be considered "about" are - mentions + @@ -822,7 +822,7 @@ Some currently missing phenomena that should be considered "about" are - is quality measurement of + 8/6/2009 Alan Ruttenberg: The strategy is to be rather specific with this relationship. There are other kinds of measurements that are not of qualities, such as those that measure time. We will add these as separate properties for the moment and see about generalizing later Alan Ruttenberg From the second IAO workshop [Alan Ruttenberg 8/6/2009: not completely current, though bringing in comparison is probably important] @@ -873,7 +873,7 @@ there is a measurement process p that has specified output m, a measurement datu - is quality measured as + 2009/10/19 Alan Ruttenberg. Named 'junk' relation useful in restrictions, but not a real instance relationship Person:Alan Ruttenberg inverse of the relation of is quality measurement of @@ -886,7 +886,7 @@ there is a measurement process p that has specified output m, a measurement datu - has_specified_input + 8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works. PERSON: Bjoern Peters PERSON: Larry Hunter @@ -904,7 +904,7 @@ there is a measurement process p that has specified output m, a measurement datu - has_specified_output + PERSON: Bjoern Peters PERSON: Larry Hunter PERSON: Melanie Courtot @@ -923,7 +923,7 @@ there is a measurement process p that has specified output m, a measurement datu - is_manufactured_by + Alan Ruttenberg Liju Fan c is_manufactured_by o means that there was a process p in which c was built in which a person, or set of people or machines did the work(bore the "Manufacturer Role", and those people/and or machines were members or of directed by the organization to do this. @@ -948,7 +948,7 @@ there is a measurement process p that has specified output m, a measurement datu - is_specified_output_of + PERSON:Bjoern Peters is_specified_output_of A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of. @@ -962,7 +962,7 @@ there is a measurement process p that has specified output m, a measurement datu - achieves_planned_objective + A cell sorting process achieves the objective specification 'material separation objective' BP, AR, PPPB branch PPPB branch derived @@ -977,7 +977,7 @@ there is a measurement process p that has specified output m, a measurement datu - has grain + PAPER: Granularity, scale and collectivity: When size does and does not matter, Alan Rector, Jeremy Rogers, Thomas Bittner, Journal of Biomedical Informatics 39 (2006) 333-349 has grain the relation of the cells in the finger of the skin to the finger, in which an indeterminate number of grains are parts of the whole by virtue of being grains in a collective that is part of the whole, and in which removing one granular part does not nec- essarily damage or diminish the whole. Ontological Whether there is a fixed, or nearly fixed number of parts - e.g. fingers of the hand, chambers of the heart, or wheels of a car - such that there can be a notion of a single one being missing, or whether, by contrast, the number of parts is indeterminate - e.g., cells in the skin of the hand, red cells in blood, or rubber molecules in the tread of the tire of the wheel of the car. @@ -992,7 +992,7 @@ there is a measurement process p that has specified output m, a measurement datu - objective_achieved_by + This relation obtains between a a objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process. definition needs clean up to indicate directionality @@ -1006,7 +1006,7 @@ there is a measurement process p that has specified output m, a measurement datu - inheres in + This clarifies that only specifically dependent continuants inhere in (specifically) one independent continuant over all time. For GDCs, there in implicitly inherence to all the independent continuants in which the concretizations inhere. Should add a 'cardinality 1' restriction to the definition of specifically dependent continuant. This relation belongs in BFO/RO, and will be in BFO 2 @@ -1019,7 +1019,7 @@ there is a measurement process p that has specified output m, a measurement datu - bearer_of + @@ -1029,7 +1029,7 @@ there is a measurement process p that has specified output m, a measurement datu - participates in + @@ -1039,7 +1039,7 @@ there is a measurement process p that has specified output m, a measurement datu - has participant + @@ -1049,7 +1049,7 @@ there is a measurement process p that has specified output m, a measurement datu - derives from (ro) + @@ -1057,7 +1057,7 @@ there is a measurement process p that has specified output m, a measurement datu - location of + @@ -1065,7 +1065,7 @@ there is a measurement process p that has specified output m, a measurement datu - contained in + @@ -1073,7 +1073,7 @@ there is a measurement process p that has specified output m, a measurement datu - contains + @@ -1081,7 +1081,7 @@ there is a measurement process p that has specified output m, a measurement datu - located in + @@ -1089,7 +1089,7 @@ there is a measurement process p that has specified output m, a measurement datu - adjacent to + @@ -1097,7 +1097,7 @@ there is a measurement process p that has specified output m, a measurement datu - has input + @@ -1106,7 +1106,7 @@ there is a measurement process p that has specified output m, a measurement datu - has output + @@ -1115,7 +1115,7 @@ there is a measurement process p that has specified output m, a measurement datu - member of + @@ -1124,7 +1124,7 @@ there is a measurement process p that has specified output m, a measurement datu - has_member + @@ -1132,7 +1132,7 @@ there is a measurement process p that has specified output m, a measurement datu - output_of + @@ -1141,7 +1141,7 @@ there is a measurement process p that has specified output m, a measurement datu - produces + Melissa Haendel a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix. @@ -1154,7 +1154,7 @@ there is a measurement process p that has specified output m, a measurement datu - produced_by + @@ -1165,7 +1165,7 @@ there is a measurement process p that has specified output m, a measurement datu - is agent in + @@ -1181,7 +1181,7 @@ there is a measurement process p that has specified output m, a measurement datu - role_of + A relation between a role R and an entity E. R role_of E iff: R inheres_in E and R is a role GROUP:OBI:<http://obi.sourceforge.net> PERSON: Chris Mungall @@ -1196,7 +1196,7 @@ there is a measurement process p that has specified output m, a measurement datu - affirmedby + The public description was taken from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html http://purl.org/ontology/bibo/ A legal decision that affirms a ruling. @@ -1207,7 +1207,7 @@ there is a measurement process p that has specified output m, a measurement datu - annotates + The public description source is: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html. http://purl.org/ontology/bibo/ stable @@ -1219,7 +1219,7 @@ there is a measurement process p that has specified output m, a measurement datu - cited by + @@ -1227,7 +1227,7 @@ there is a measurement process p that has specified output m, a measurement datu - cites + @@ -1235,7 +1235,7 @@ there is a measurement process p that has specified output m, a measurement datu - court + Public description take from: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html. Bibo considers this property "unstable". http://purl.org/ontology/bibo/ unstable @@ -1247,7 +1247,7 @@ there is a measurement process p that has specified output m, a measurement datu - related degree + The source of the public description and this info is found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html. Bibo considers this term "unstable". The bibo editorial note is: "We are not defining, using an enumeration, the range of the bibo:degree to the defined list of bibo:ThesisDegree. We won't do it because we want people to be able to define new degress if needed by some special usecases. Creating such an enumeration would restrict this to happen." http://purl.org/ontology/bibo/ The thesis degree. @@ -1260,7 +1260,7 @@ there is a measurement process p that has specified output m, a measurement datu - director + Definition take from this site: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . http://purl.org/ontology/bibo/ A Film director. @@ -1272,7 +1272,7 @@ there is a measurement process p that has specified output m, a measurement datu - interviewee + http://purl.org/ontology/bibo/ stable An agent that is interviewed by another agent. @@ -1283,7 +1283,7 @@ there is a measurement process p that has specified output m, a measurement datu - interviewer + http://purl.org/ontology/bibo/ stable An agent that interview another agent. @@ -1294,7 +1294,7 @@ there is a measurement process p that has specified output m, a measurement datu - performer + http://purl.org/ontology/bibo/ stable @@ -1304,7 +1304,7 @@ there is a measurement process p that has specified output m, a measurement datu - related documents + Public Description from source: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . Bibo considers the bibo:presents and the bibo:presentedAt unstable terms. It also indicates that bibo:presents is a sub-property of event:product. http://purl.org/ontology/bibo/ Relates an event to associated documents; for example, conference to a paper. @@ -1316,7 +1316,7 @@ there is a measurement process p that has specified output m, a measurement datu - recipient + http://purl.org/ontology/bibo/ stable An agent that receives a communication document. @@ -1327,7 +1327,7 @@ there is a measurement process p that has specified output m, a measurement datu - reproduced in + @@ -1335,7 +1335,7 @@ there is a measurement process p that has specified output m, a measurement datu - reversedby + The first sentence of the public description was taken from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html http://purl.org/ontology/bibo/ A legal decision that reverses a ruling. @@ -1346,7 +1346,7 @@ there is a measurement process p that has specified output m, a measurement datu - review of + The bibo:reviewOf public description was found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . As of 26 May 2010, bibo:reviewOf is used with the class Review, but core:reviewIn doesn't seem to be being used. @@ -1355,7 +1355,7 @@ there is a measurement process p that has specified output m, a measurement datu - status + paraphrased editorial note from the bibo ontology: We are not defining, using an enumeration, the range of the bibo:status to be a defined list of bibo:DocumentStatus. This is because we want people to be able to define new statuses if needed; and creating such an enumeration would prevent this. @@ -1364,7 +1364,7 @@ there is a measurement process p that has specified output m, a measurement datu - subsequentlegaldecision + Public description is from comments of this object property in bibo ontology located here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html http://purl.org/ontology/bibo/ A legal decision on appeal that takes action on a case (affirming it, reversing it, etc.). @@ -1375,7 +1375,7 @@ there is a measurement process p that has specified output m, a measurement datu - transcript of + The bibo:transcriptOf public description was found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . Bibo considers this term unstable. http://purl.org/ontology/bibo/ Relates a document to some transcribed original. @@ -1387,7 +1387,7 @@ there is a measurement process p that has specified output m, a measurement datu - translation of + Examples shows a book has French language version. Public description source: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . http://purl.org/ontology/bibo/ Relates a translated document to the original document. @@ -1399,7 +1399,7 @@ there is a measurement process p that has specified output m, a measurement datu - translator + @@ -1407,7 +1407,7 @@ there is a measurement process p that has specified output m, a measurement datu - has_global_citation_frequency + A property linking a publication entity to an instance of c40:GlobalCitationCount that specifies how many times a work has been cited by others, according to a particular information source on a particular date. @@ -1416,7 +1416,7 @@ there is a measurement process p that has specified output m, a measurement datu - has global count source + A property linking an instance of c40:GlobalCitationCount to the bibliographic information source providing the global citation count information for a particular publication on a particular date. @@ -1425,7 +1425,7 @@ there is a measurement process p that has specified output m, a measurement datu - assigned by + Relates a Relationship (as a predicate or n-ary relation over one or more Thing) to an Agent that defined or instantiated the predicate instance. @@ -1434,7 +1434,7 @@ there is a measurement process p that has specified output m, a measurement datu - assigns + @@ -1443,7 +1443,7 @@ there is a measurement process p that has specified output m, a measurement datu - date filed + @@ -1454,7 +1454,7 @@ there is a measurement process p that has specified output m, a measurement datu - date issued + @@ -1464,7 +1464,7 @@ there is a measurement process p that has specified output m, a measurement datu - has date/time interval + @@ -1473,7 +1473,7 @@ there is a measurement process p that has specified output m, a measurement datu - date/time precision + @@ -1482,7 +1482,7 @@ there is a measurement process p that has specified output m, a measurement datu - date/time value + @@ -1491,7 +1491,7 @@ there is a measurement process p that has specified output m, a measurement datu - end date value + @@ -1502,7 +1502,7 @@ there is a measurement process p that has specified output m, a measurement datu - expiration date + @@ -1511,7 +1511,7 @@ there is a measurement process p that has specified output m, a measurement datu - features + This is done through a restriction on the foaf:Person class. @@ -1520,7 +1520,7 @@ there is a measurement process p that has specified output m, a measurement datu - geographic focus + @@ -1529,7 +1529,7 @@ there is a measurement process p that has specified output m, a measurement datu - geographic focus of + @@ -1539,7 +1539,7 @@ there is a measurement process p that has specified output m, a measurement datu - geographic_location_of + @@ -1547,7 +1547,7 @@ there is a measurement process p that has specified output m, a measurement datu - subcontracted through + @@ -1557,7 +1557,7 @@ there is a measurement process p that has specified output m, a measurement datu - associated concept + @@ -1565,7 +1565,7 @@ there is a measurement process p that has specified output m, a measurement datu - has geographic location + Currently being used by a restriction on organization. @@ -1575,7 +1575,7 @@ there is a measurement process p that has specified output m, a measurement datu - has prerequisite + @@ -1585,7 +1585,7 @@ there is a measurement process p that has specified output m, a measurement datu - published in + @@ -1593,7 +1593,7 @@ there is a measurement process p that has specified output m, a measurement datu - successor organization + @@ -1603,7 +1603,7 @@ there is a measurement process p that has specified output m, a measurement datu - has translation + Examples shows a book has French language version. Public description source: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . @@ -1612,7 +1612,7 @@ there is a measurement process p that has specified output m, a measurement datu - offered by + @@ -1620,7 +1620,7 @@ there is a measurement process p that has specified output m, a measurement datu - offers + @@ -1628,7 +1628,7 @@ there is a measurement process p that has specified output m, a measurement datu - prerequisite for + @@ -1638,7 +1638,7 @@ there is a measurement process p that has specified output m, a measurement datu - provides funding through + For example, National Science Foundation providesFundingThrough Graduate Research Fellowship Program; National Institutes of Health providesFundingThrough National Center for Research Resources. @@ -1649,7 +1649,7 @@ there is a measurement process p that has specified output m, a measurement datu - publication venue for + @@ -1657,7 +1657,7 @@ there is a measurement process p that has specified output m, a measurement datu - publisher (vivo op) + Public Definition source (http://www.answers.com/topic/publisher). @@ -1667,7 +1667,7 @@ there is a measurement process p that has specified output m, a measurement datu - publisher of + Public Definition source (http://www.answers.com/topic/publisher). @@ -1677,7 +1677,7 @@ there is a measurement process p that has specified output m, a measurement datu - related by + Relates a Thing to a Relationship as a Thing that is somehow related to other Thing in the same Relationship instance. A Relationship instnace is a predicate over Thing and is created by an Agent. @@ -1686,7 +1686,7 @@ there is a measurement process p that has specified output m, a measurement datu - relates + Relates a Relationship instance to the one or more Thing of the Relationship. There is a separate property (assigned by) to relate to the Agent that defines the Relationship. @@ -1696,7 +1696,7 @@ there is a measurement process p that has specified output m, a measurement datu - reviewed_in + @@ -1704,7 +1704,7 @@ there is a measurement process p that has specified output m, a measurement datu - start date value + @@ -1715,7 +1715,7 @@ there is a measurement process p that has specified output m, a measurement datu - subcontracts grant + @@ -1725,7 +1725,7 @@ there is a measurement process p that has specified output m, a measurement datu - translator of + @@ -1733,7 +1733,7 @@ there is a measurement process p that has specified output m, a measurement datu - access provided by + @@ -1741,7 +1741,7 @@ there is a measurement process p that has specified output m, a measurement datu - documentation for + @@ -1749,7 +1749,7 @@ there is a measurement process p that has specified output m, a measurement datu - protocol realized by + @@ -1757,7 +1757,7 @@ there is a measurement process p that has specified output m, a measurement datu - implements + @@ -1765,7 +1765,7 @@ there is a measurement process p that has specified output m, a measurement datu - is_encoded_in + @@ -1782,7 +1782,7 @@ there is a measurement process p that has specified output m, a measurement datu - has_agent + @@ -1790,7 +1790,7 @@ there is a measurement process p that has specified output m, a measurement datu - deprecatedproperty + @@ -1804,7 +1804,7 @@ there is a measurement process p that has specified output m, a measurement datu - broader term + Public description modified from the information on this page: http://www.w3.org/TR/2005/WD-swbp-skos-core-guide-20050510/#sechierarchy . @@ -1813,7 +1813,7 @@ there is a measurement process p that has specified output m, a measurement datu - narrower term + Public description modified from the information on this page: http://www.w3.org/TR/2005/WD-swbp-skos-core-guide-20050510/#sechierarchy . @@ -1822,7 +1822,7 @@ there is a measurement process p that has specified output m, a measurement datu - related (skos) + @@ -1830,7 +1830,7 @@ there is a measurement process p that has specified output m, a measurement datu - has address + @@ -1839,7 +1839,7 @@ there is a measurement process p that has specified output m, a measurement datu - has calendar link + @@ -1848,7 +1848,7 @@ there is a measurement process p that has specified output m, a measurement datu - has calendar request + @@ -1857,7 +1857,7 @@ there is a measurement process p that has specified output m, a measurement datu - has calender busy + @@ -1866,7 +1866,7 @@ there is a measurement process p that has specified output m, a measurement datu - has category + @@ -1875,7 +1875,7 @@ there is a measurement process p that has specified output m, a measurement datu - has email + @@ -1884,7 +1884,7 @@ there is a measurement process p that has specified output m, a measurement datu - has formatted name + @@ -1893,7 +1893,7 @@ there is a measurement process p that has specified output m, a measurement datu - has geo + @@ -1902,7 +1902,7 @@ there is a measurement process p that has specified output m, a measurement datu - has messaging + @@ -1911,7 +1911,7 @@ there is a measurement process p that has specified output m, a measurement datu - has key + @@ -1920,7 +1920,7 @@ there is a measurement process p that has specified output m, a measurement datu - has language (vcard op) + @@ -1929,7 +1929,7 @@ there is a measurement process p that has specified output m, a measurement datu - has logo + @@ -1938,7 +1938,7 @@ there is a measurement process p that has specified output m, a measurement datu - member + To include a member in the group this vCard represents @@ -1957,7 +1957,7 @@ there is a measurement process p that has specified output m, a measurement datu - has name + @@ -1966,7 +1966,7 @@ there is a measurement process p that has specified output m, a measurement datu - has nickname + @@ -1975,7 +1975,7 @@ there is a measurement process p that has specified output m, a measurement datu - has note + @@ -1984,7 +1984,7 @@ there is a measurement process p that has specified output m, a measurement datu - has organization name + @@ -1993,7 +1993,7 @@ there is a measurement process p that has specified output m, a measurement datu - has organisational unit name + @@ -2002,7 +2002,7 @@ there is a measurement process p that has specified output m, a measurement datu - has photo + @@ -2011,7 +2011,7 @@ there is a measurement process p that has specified output m, a measurement datu - has related (vcard op) + @@ -2020,7 +2020,7 @@ there is a measurement process p that has specified output m, a measurement datu - has role + @@ -2029,7 +2029,7 @@ there is a measurement process p that has specified output m, a measurement datu - has sound + @@ -2038,7 +2038,7 @@ there is a measurement process p that has specified output m, a measurement datu - has telephone + @@ -2047,7 +2047,7 @@ there is a measurement process p that has specified output m, a measurement datu - has time zone + @@ -2056,7 +2056,7 @@ there is a measurement process p that has specified output m, a measurement datu - has title + @@ -2065,7 +2065,7 @@ there is a measurement process p that has specified output m, a measurement datu - has url + @@ -2074,7 +2074,7 @@ there is a measurement process p that has specified output m, a measurement datu - orcid id + This is now an object property where the object value is a resource of the form <http://orcid.org/NNNN-NNNN-NNNN-NNNN>. This is to support connecting VIVO and ORCID in the linked data web. Note: a person can have multiple ORCID iDs. @@ -2083,7 +2083,7 @@ there is a measurement process p that has specified output m, a measurement datu - contributes to + @@ -2091,7 +2091,7 @@ there is a measurement process p that has specified output m, a measurement datu - contributor + @@ -2099,7 +2099,7 @@ there is a measurement process p that has specified output m, a measurement datu - research areas + @@ -2107,7 +2107,7 @@ there is a measurement process p that has specified output m, a measurement datu - research area of + diff --git a/rdf/tbox/filegraph/object-properties2.owl b/rdf/tbox/filegraph/object-properties2.owl index fd1c502e..a56dbca0 100644 --- a/rdf/tbox/filegraph/object-properties2.owl +++ b/rdf/tbox/filegraph/object-properties2.owl @@ -15,7 +15,7 @@ - realized in + (forall (x y z t) (if (and (RealizableEntity x) (Process y) (realizesAt y x t) (bearerOfAt z x t)) (hasParticipantAt y z t))) // axiom label in BFO2 CLIF: [106-002] [copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003]) if a realizable entity b is realized in a process p, then p stands in the has_participant relation to the bearer of b. (axiom label in BFO2 Reference: [106-002]) @@ -30,7 +30,7 @@ - realizes + (forall (x y t) (if (realizesAt x y t) (and (Process x) (or (Disposition y) (Role y)) (exists (z) (and (MaterialEntity z) (hasParticipantAt x z t) (bearerOfAt z y t)))))) // axiom label in BFO2 CLIF: [059-003] realizes realizes diff --git a/rdf/tbox/filegraph/object-properties3.owl b/rdf/tbox/filegraph/object-properties3.owl index be14f490..bc8c2644 100644 --- a/rdf/tbox/filegraph/object-properties3.owl +++ b/rdf/tbox/filegraph/object-properties3.owl @@ -24,7 +24,7 @@ --> - is defined by + @@ -33,10 +33,10 @@ - description + - name suffix + @@ -125,7 +125,7 @@ - related degree + @@ -133,7 +133,7 @@ - director + @@ -141,7 +141,7 @@ - distributor + Public Description for bibo:distributor taken from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . @@ -151,7 +151,7 @@ - interviewee + @@ -159,7 +159,7 @@ - interviewer + @@ -167,7 +167,7 @@ - issuer + An entity responsible for issuing often informally published documents such as press releases, reports, etc. This term is classified as unstable by bibo. http://purl.org/ontology/bibo/ An entity responsible for issuing often informally published documents such as press releases, reports, etc. @@ -180,7 +180,7 @@ - performer + @@ -189,7 +189,7 @@ - presented at + Public Description from source: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . Bibo considers the bibo:presents and the bibo:presentedAt unstable terms. It also indicates that bibo:presents is a sub-property of event:product. http://purl.org/ontology/bibo/ Relates a document to an event; for example, a paper to a conference. @@ -204,7 +204,7 @@ - related documents + @@ -212,7 +212,7 @@ - recipient + @@ -220,7 +220,7 @@ - reproduced in + @@ -229,7 +229,7 @@ - status + @@ -238,7 +238,7 @@ - subsequentLegalDecision + @@ -246,7 +246,7 @@ - translation of + @@ -254,7 +254,7 @@ - translator + @@ -264,7 +264,7 @@ - has global citation frequency + A property linking a publication entity to the property c40:GlobalCitationCount that specify how many times a work has been cited by others, according to a particular information source on a particular date. @@ -274,7 +274,7 @@ - has global count source + A property linking the property c40:GlobalCitationCount to the bibliographic information source providing the global citation count information for a particular publication on a particular date. @@ -286,7 +286,7 @@ - assignee + @@ -296,7 +296,7 @@ - assignee for + @@ -308,7 +308,7 @@ - degree candidacy + @@ -319,7 +319,7 @@ - distributes + Public Description for bibo:distributor taken from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . @@ -329,7 +329,7 @@ - distributes funding from + For example, National Science Foundation providesFundingThrough Graduate Research Fellowship Program; National Institutes of Health providesFundingThrough National Center for Research Resources. @@ -342,7 +342,7 @@ - eligible for + @@ -351,7 +351,7 @@ - equipment for + @@ -361,7 +361,7 @@ - facility for + @@ -371,7 +371,7 @@ - featured in + This is done through a restriction on the foaf:Person class. @@ -382,7 +382,7 @@ - features + @@ -391,7 +391,7 @@ - provides funding for + @@ -402,7 +402,7 @@ - governing authority for + @@ -412,7 +412,7 @@ - predecessor organization + @@ -422,7 +422,7 @@ - proceedings + A possible working example: The conference proceeding of the SPIE was generated from the conference - International Society for Optical Engineering. @@ -433,7 +433,7 @@ - published in + @@ -441,7 +441,7 @@ - research areas + @@ -452,7 +452,7 @@ - has subject area + @@ -461,7 +461,7 @@ - successor organization + @@ -471,7 +471,7 @@ - supported by + an information resource (typically a publication) supported by (typically via funding) an agreement (such as a grant) @@ -482,7 +482,7 @@ - proceedings of + A possible working example: The conference proceeding of the SPIE was generated from the conference - International Society for Optical Engineering. @@ -496,7 +496,7 @@ - reproduces + @@ -508,7 +508,7 @@ - research area of + @@ -517,7 +517,7 @@ - researcher role of + @@ -528,7 +528,7 @@ - reviewed in + The bibo:reviewOf public description was found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . As of 26 May 2010, bibo:reviewOf is used with the class Review, but core:reviewIn doesn't seem to be being used. @@ -538,7 +538,7 @@ - reviewer role of + @@ -550,7 +550,7 @@ - contributes to + @@ -560,7 +560,7 @@ - award sponsored by + @@ -570,7 +570,7 @@ - sponsors award or honor + @@ -582,7 +582,7 @@ - supported by + general relationship of support @@ -592,7 +592,7 @@ - supported publications + an information resource (typically a publication) supported by (typically via funding) an agreement (such as a grant) @@ -604,7 +604,7 @@ - supports + general relationship of support @@ -614,7 +614,7 @@ - translator of + @@ -623,7 +623,7 @@ - valid in + @@ -632,8 +632,8 @@ - has broader - broader term + + Public description modified from the information on this page: http://www.w3.org/TR/2005/WD-swbp-skos-core-guide-20050510/#sechierarchy . @@ -644,8 +644,8 @@ - has narrower - narrower term + + Public description modified from the information on this page: http://www.w3.org/TR/2005/WD-swbp-skos-core-guide-20050510/#sechierarchy . @@ -656,8 +656,8 @@ - has related - related + + @@ -677,7 +677,7 @@ - abstract + @@ -685,7 +685,7 @@ - Digital Object Identifier (DOI) + @@ -693,7 +693,7 @@ - EAN International-Uniform Code Council (EAN-UCC) 13 + @@ -701,7 +701,7 @@ - edition + @@ -709,7 +709,7 @@ - Electronic International Standard Serial Number (EISSN) + @@ -717,7 +717,7 @@ - International Standard Serial Number (ISSN) + @@ -725,7 +725,7 @@ - Library of Congress Control Number (LCCN) + @@ -733,7 +733,7 @@ - number of pages + @@ -741,7 +741,7 @@ - Online Computer Library Center (OCLC) number + @@ -749,7 +749,7 @@ - end page + @@ -757,7 +757,7 @@ - start page + @@ -765,7 +765,7 @@ - has global count date + The date on which the global citation count of the cited entity was recorded from a named bibliographic information source. @@ -776,7 +776,7 @@ - has global count value + An integer defining the value of the global citation count of a cited entity recorded from a named bibliographic information source on a particular date. @@ -787,7 +787,7 @@ - preferredNamespaceUri + @@ -795,7 +795,7 @@ - abbreviation + @@ -804,7 +804,7 @@ - credits + @@ -812,7 +812,7 @@ - department or school name within institution + Not intended to be an institution name. @@ -822,7 +822,7 @@ - description + @@ -831,7 +831,7 @@ - entry term + @@ -840,7 +840,7 @@ - keywords + @@ -848,7 +848,7 @@ - direct costs + @@ -858,7 +858,7 @@ - hide from display + @@ -867,7 +867,7 @@ - HR job title + Definition http://en.wikipedia.org/wiki/Job_title#Job_title. administrative secretary @@ -879,7 +879,7 @@ - is this person a corresponding author? + True; False @@ -890,7 +890,7 @@ - major field of degree + @@ -901,7 +901,7 @@ - place of publication + @@ -909,7 +909,7 @@ - preferred display order + @@ -918,7 +918,7 @@ - rank + @@ -926,7 +926,7 @@ - supplemental information + @@ -934,7 +934,7 @@ - term label + @@ -942,7 +942,7 @@ - term type + diff --git a/rdf/tbox/filegraph/ontologies.owl b/rdf/tbox/filegraph/ontologies.owl index 342186e2..e47fba90 100644 --- a/rdf/tbox/filegraph/ontologies.owl +++ b/rdf/tbox/filegraph/ontologies.owl @@ -13,4 +13,8 @@ + + + + diff --git a/rdf/tbox/filegraph/other.owl b/rdf/tbox/filegraph/other.owl index 7247dfcd..3b053bab 100644 --- a/rdf/tbox/filegraph/other.owl +++ b/rdf/tbox/filegraph/other.owl @@ -59,7 +59,7 @@ - rate measurement datum + @@ -68,7 +68,7 @@ - rate unit + @@ -90,7 +90,7 @@ - count per year + diff --git a/rdf/tbox/filegraph/outreach.owl b/rdf/tbox/filegraph/outreach.owl index 677c5a8e..ea0f29ce 100644 --- a/rdf/tbox/filegraph/outreach.owl +++ b/rdf/tbox/filegraph/outreach.owl @@ -47,7 +47,7 @@ - outreach provider role + An outreach or community service role directed outside a person's primary profession and institution Communicating Astronomy to the Public The example is one outreach role required by US space agency NASA, which is related with one project in NASA. Name of the outreach role should be put here. diff --git a/rdf/tbox/filegraph/personTypes.n3 b/rdf/tbox/filegraph/personTypes.n3 index e07a95fe..7cbe720f 100644 --- a/rdf/tbox/filegraph/personTypes.n3 +++ b/rdf/tbox/filegraph/personTypes.n3 @@ -48,7 +48,7 @@ core:FacultyMember a owl:Class ; - rdfs:label "Faculty Member"@en-us ; + rdfs:subClassOf foaf:Person , ; vitro:descriptionAnnot "Definition from here: http://research.carleton.ca/htr/defs.php."^^xsd:string ; @@ -56,42 +56,42 @@ core:FacultyMember core:Postdoc a owl:Class ; - rdfs:label "Postdoc"@en-us ; + rdfs:subClassOf , core:NonFacultyAcademic ; obo:IAO_0000115 "A Person holding an academic employment appointment focused on research rather than teaching; temporary (or for some defined term)"^^xsd:string . core:NonFacultyAcademic a owl:Class ; - rdfs:label "Non-Faculty Academic"@en-us ; + rdfs:subClassOf foaf:Person , ; obo:IAO_0000115 "A person not considered a faculty member but holding an academic appointment."^^xsd:string . core:EmeritusLibrarian a owl:Class ; - rdfs:label "Librarian Emeritus"@en-us ; + rdfs:subClassOf foaf:Person , ; obo:IAO_0000115 "A retired librarian who has retained their rank, title and privileges."^^xsd:string . core:EmeritusFaculty a owl:Class ; - rdfs:label "Faculty Member Emeritus"@en-us ; + rdfs:subClassOf foaf:Person , ; obo:IAO_0000115 "A retired faculty member who has retained their rank, title and privileges."^^xsd:string . core:Librarian a owl:Class ; - rdfs:label "Librarian"@en-us ; + rdfs:subClassOf foaf:Person , ; obo:IAO_0000115 "A person working in a position of librarian or information professional, or academic or technical expert in support of providing information services or materials."^^xsd:string . core:EmeritusProfessor a owl:Class ; - rdfs:label "Professor Emeritus"@en-us ; + rdfs:subClassOf core:EmeritusFaculty , foaf:Person , ; obo:IAO_0000115 "A retired professor who has retained their rank, title and privileges."^^xsd:string . core:NonAcademic a owl:Class ; - rdfs:label "Non-Academic"@en-us ; + rdfs:subClassOf foaf:Person , ; obo:IAO_0000115 "A person holding a position that is not considered to be an academic appointment."^^xsd:string . diff --git a/rdf/tbox/filegraph/process.owl b/rdf/tbox/filegraph/process.owl index 50cb2d93..5e03f2f9 100644 --- a/rdf/tbox/filegraph/process.owl +++ b/rdf/tbox/filegraph/process.owl @@ -47,7 +47,7 @@ - advising process + @@ -55,7 +55,7 @@ - attending process + @@ -63,7 +63,7 @@ - presenting process + @@ -71,7 +71,7 @@ - project + An endeavor, frequently collaborative, that occurs over a finite period of time and is intended to achieve a particular aim. An endeavor, frequently collaborative, that occurs over a finite period of time and is intended to achieve a particular aim. diff --git a/rdf/tbox/filegraph/publication.owl b/rdf/tbox/filegraph/publication.owl index 7c43ab8f..9f3c9f41 100644 --- a/rdf/tbox/filegraph/publication.owl +++ b/rdf/tbox/filegraph/publication.owl @@ -80,7 +80,7 @@ - journal article + Examples are articles published in the journals, Nature and Science. The content can often be cited by reference to a paper based encoding, e.g. Authors, Title of article, Journal name, date or year of publication, volume and page number. OBI_0000159 @@ -116,7 +116,7 @@ - academic article + A specific academic journal article Written by scholars for other scholars, typically published in an academic journal with an abstract and bibliography @@ -130,7 +130,7 @@ - article + A specific journal article A written composition in prose, usually nonfiction, on a specific topic, forming an independent part of a periodical or book @@ -145,7 +145,7 @@ - audio document + Recorded audio in any format http://purl.org/ontology/bibo/ @@ -159,7 +159,7 @@ - audio-visual document + Audiovisual recording in any format film; video; Blu-ray @@ -173,7 +173,7 @@ - bill + Draft legislation presented for discussion to a legal body Short Definition from the bibo ontology @@ -187,7 +187,7 @@ - book + A written or printed work of fiction or nonfiction, usually on sheets of paper fastened or bound together within covers Short Definition copied from bibo ontology @@ -201,7 +201,7 @@ - book section + A section of a book Short Definition from the bibo ontology @@ -215,7 +215,7 @@ - brief + A document stating the facts and points of law of a client's case http://purl.org/ontology/bibo/ @@ -228,7 +228,7 @@ - chapter (bibo) + A main division of a book http://purl.org/ontology/bibo/ @@ -241,7 +241,7 @@ - code (bibo) + A work consisting of texts of rules and regulations related to statutes issued by executive or administrative agencies Code of Federal Regulations @@ -256,7 +256,7 @@ - collected document + Short Definition is the Medical Subject Heading (MeSH) definition Work consisting of collections of previously published works @@ -270,7 +270,7 @@ - collection (bibo) + Collection of information resources that have a unified identity Collection of information resources that have a unified identity. Archives, museums and libraries often acquire collections on specific subjects and from distinguished authors or researchers. Also includes collections of resources bundled into a license. @@ -285,7 +285,7 @@ - conference + 2010 International Congress on Autoimmunity; American Libraries Association 2009 A meeting for consultation or discussion. @@ -300,7 +300,7 @@ - court reporter + Collection of legal cases Supreme Court Reporter @@ -314,7 +314,7 @@ - document + A bounded physical representation of a body of information designed with the capacity (and usually intent) to communicate Short Definition from the bibo ontology @@ -333,7 +333,7 @@ - document part + A distinct part of a larger document or collected document Short Definition from the bibo ontology @@ -347,7 +347,7 @@ - edited book + An edited collection of stand-alone articles published as a book Best American Science Writing 2009 @@ -361,7 +361,7 @@ - excerpt + A passage selected from a larger work Short Definition from the bibo ontology @@ -375,7 +375,7 @@ - film + Audiovisual recording in film format http://purl.org/ontology/bibo/ @@ -388,7 +388,7 @@ - hearing + An instance or a session in which testimony and arguments are presented, esp. before an official, as a judge in a lawsuit. Definiton from Bibo here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html @@ -402,7 +402,7 @@ - image + @@ -418,7 +418,7 @@ - interview + A conversation between two or more people where questions are asked by the interviewer to obtain information from the interviewee. http://purl.org/ontology/bibo/ @@ -432,7 +432,7 @@ - issue (bibo c) + Short Definition from the bibo ontology http://purl.org/ontology/bibo/ @@ -446,7 +446,7 @@ - journal + Articles usually contain abstracts and bibliographies. Includes peer-reviewed, non-peer-reviewed, and open access journals. Journals are usually indexed in the major academic databases such as PubMed and Web of Science. Contains original scholarly research or review articles by experts in the field @@ -461,7 +461,7 @@ - legal case document + Official court papers for a case http://purl.org/ontology/bibo/ @@ -474,7 +474,7 @@ - decision + The written determination of a case, motion or claim by a court or tribunal http://purl.org/ontology/bibo/ @@ -487,7 +487,7 @@ - legal document + a document that states some contractual relationship or grants some right http://purl.org/ontology/bibo/ @@ -500,7 +500,7 @@ - legislation + Enactments of legislative bodies, published in either statute or code form From OCLC Input Standards, EntW @@ -514,7 +514,7 @@ - letter + A written or printed communication addressed to a person or organization and usually transmitted by mail A written or printed communication addressed to a person or organization and usually transmitted by mail @@ -525,7 +525,7 @@ - magazine + Abstracts and bibliographies are usually not included in magazines. Contains articles of current events or general interest, geared to the reading public as being informative or recreational @@ -540,7 +540,7 @@ - manual + A book of instructions or guide to a specific topic SDB User Manual @@ -554,7 +554,7 @@ - manuscript + Short Definition is the Medical Subject Heading (MeSH) definition Works prepared by hand including handwritten or typescript drafts of pre-publication papers or works not otherwise reproduced in multiple copies @@ -568,7 +568,7 @@ - map + A graphical depiction of geographic features, scientific discipline, scientific data analytical results The Short Definition is how the bibo ontology defines Map. It has been extended to include more broader concept of map which includes science maps, social network maps. @@ -582,7 +582,7 @@ - newspaper + Contains news articles, opinions, features, advertising, and is usually issued daily or weekly USA Today @@ -596,7 +596,7 @@ - note (bibo c) + Notes or annotations about a resource Short Definition from bibo ontology @@ -610,7 +610,7 @@ - patent + (from BIBO) A document describing the exclusive right granted by a government to an inventor to manufacture, use, or sell an invention for a certain number of years A patent is an exclusive right granted for an invention, which is a product or a process that provides, in general, a new way of doing something, or offers a new technical solution to a problem. In order to be patentable, the invention must fulfill certain conditions. (http://www.wipo.int/patentscope/en/) @@ -624,7 +624,7 @@ - performance + Something carried out, acted or rendered. http://purl.org/ontology/bibo/ @@ -637,7 +637,7 @@ - periodical + http://purl.org/ontology/bibo/ stable @@ -649,7 +649,7 @@ - personal communication document + A personal communication manifested in some document. A personal communication manifested in some document. @@ -660,7 +660,7 @@ - proceedings + A compilation of documents published from an event, such as a conference Short Definition copied from bibo ontology @@ -674,7 +674,7 @@ - quote + An excerpted collection of words Short Definition from the bibo ontology @@ -688,7 +688,7 @@ - reference source + A document that presents authoritative reference information, such as a dictionary or encylopedia Short Definition from the bibo ontology @@ -702,7 +702,7 @@ - report + A document describing an account or statement describing in detail an event, situation, or the like, usually as the result of observation, inquiry, etc. Medical Subject Heading (MeSH) definition of Technical Report: Work consisting of a formal report giving details of the investigation and results of a medical or other scientific problem. When issued by a government agency or comparable official body, its contents may be classified, unclassified, or declassified with regard to security clearance. This publication type may also cover a scientific paper or article that records the current state or current position of scientific research and development. If so labeled by the editor or publisher, this publication type may be properly used for journal articles. @@ -716,7 +716,7 @@ - series + A thematic collection of documents, usually books, issued at regular or irregular intervals Methods in Molecular Biology @@ -730,7 +730,7 @@ - slide + A slide in a slideshow Short Definition from the bibo ontology @@ -744,7 +744,7 @@ - slideshow + A presentation of a series of slides, usually presented in front of an audience with written text and images Short Definition from the bibo ontology @@ -758,7 +758,7 @@ - standard + A specification giving a precise statement of a process or a service requirement, often sanctioned by a nation or industry Short Definition from OCLC Input Standards, EntW @@ -772,7 +772,7 @@ - statute + A bill enacted into law Short Definition from bibo ontology @@ -786,7 +786,7 @@ - thesis + Short Definition from OCLC Input Standards, EntW Works created to satisfy the requirements for an academic certification or degree; also called dissertation @@ -800,7 +800,7 @@ - webpage + One section of a website that appears at a unique address within the parent site's address or URL on the World Wide Web http://purl.org/ontology/bibo/ @@ -813,7 +813,7 @@ - website + A group of webpages available within a specific parent address or URL on the World Wide Web Facebook; VIVOweb.org; Flickr @@ -827,7 +827,7 @@ - workshop + Bibo Definition: A seminar, discussion group, or the like, that emphasizes exchange of ideas and the demonstration and application of techniques, skills, etc. http://purl.org/ontology/bibo/ @@ -840,7 +840,7 @@ - bibliographic information source + A source of information about bibliographic citations, such as Google Scholar, Web of Science or Scopus. @@ -850,7 +850,7 @@ - global citation count + The number of times a work has been cited globally, as determined from a particular bibliographic information source on a particular date. @@ -860,7 +860,7 @@ - clinical guideline + A recommendation on the appropriate treatment and care of people with a specific disease or condition, based on the best available evidence, designed to help healthcare professionals in their work. A recommendation on the appropriate treatment and care of people with a specific disease or condition, based on the best available evidence, designed to help healthcare professionals in their work. @@ -871,7 +871,7 @@ - comment + A verbal or written remark concerning some entity. In written form, a comment is often appended to that entity and termed an annotation. Within computer programs or ontologies, comments are added to enhance human understanding, and are usually prefaced by A verbal or written remark concerning some entity. In written form, a comment is often appended to that entity and termed an annotation. Within computer programs or ontologies, comments are added to enhance human understanding, and are usually prefaced by a special syntactic symbol that ensures they are ignored during execution of the program. @@ -884,7 +884,7 @@ has super-classes - erratum + A formal correction to an error introduced by the publisher into a previously published document. A formal correction to an error introduced by the publisher into a previously published document. @@ -895,7 +895,7 @@ has super-classes - authorship + Authorship of journal articles, books and other original works is a means by which academics communicate the results of their scholarly work, establish priority for their discoveries, and build their reputation among their peers. @@ -909,7 +909,7 @@ This class allows for linking an author to a publication while indicating inform - blog + Blog is short for weblog. Library of Congress Blog @@ -921,7 +921,7 @@ This class allows for linking an author to a publication while indicating inform - blog posting + A specific blog posting An online article or commentary appearing on a blog @@ -932,7 +932,7 @@ This class allows for linking an author to a publication while indicating inform - case study + A form of qualitative descriptive research that is used to study individuals, a small group of participants, or a group as a whole. Medical usage (from MeSH): clinical presentations that may be followed by evaluative studies that eventually lead to a diagnosis. A qualitative descriptive research study of individuals or a group @@ -943,7 +943,7 @@ This class allows for linking an author to a publication while indicating inform - catalog + A list of items in a collection; an ordered compilation of item descriptions and sufficient information to afford access to them NLM Catalog @@ -955,7 +955,7 @@ This class allows for linking an author to a publication while indicating inform - conference paper + A paper presented at a conference; optionally collected into a Proceedings or a special Journal issue @@ -965,7 +965,7 @@ This class allows for linking an author to a publication while indicating inform - conference poster + The digital file (or physical equivalent), if available after the conference, vs. the act of attending/presenting: use ConferencePresentation for information about date/time/location/name of the event where the poster was presented @@ -975,7 +975,7 @@ This class allows for linking an author to a publication while indicating inform - database (vivo) + A structured file of information or a set of logically related data stored and retrieved using computer-based means PubMed @@ -987,7 +987,7 @@ This class allows for linking an author to a publication while indicating inform - dataset + A named collection of data, usually containing only one type of data US Patent Data; US Job Data @@ -998,7 +998,7 @@ This class allows for linking an author to a publication while indicating inform - editor role + An ongoing editorial responsibility for a bibo:Collection, such as a Journal or Series An ongoing editorial responsibility for a bibo:Collection, such as a Journal or Series @@ -1008,7 +1008,7 @@ This class allows for linking an author to a publication while indicating inform - editorial article + An article of opinion, typically published in a newspaper. For academics, most commonly Op Ed pieces @@ -1018,7 +1018,7 @@ This class allows for linking an author to a publication while indicating inform - invited talk + @@ -1027,7 +1027,7 @@ This class allows for linking an author to a publication while indicating inform - news release + A short written piece focused on an event or announcement of note, having a defined publication time and of less enduring interest than a news feature. @@ -1037,7 +1037,7 @@ This class allows for linking an author to a publication while indicating inform - newsletter + The Ornithological Newsletter Usually issued periodically, prepared by or for a group or institution to present information to a specific audience, often also made available to the press and public @@ -1048,7 +1048,7 @@ This class allows for linking an author to a publication while indicating inform - peer reviewer role + A role of peer reviewing is a generic term for a process of self-regulation by a profession or a process of evaluation involving qualified individuals within the relevant field. Peer review methods are employed to maintain standards, improve performance and provide credibility. In academia the term is often used to denote a prepublication review of academic papers; reviewing an academic paper is often called refereeing. @@ -1073,7 +1073,7 @@ Contents - research proposal + A proposal for a research grant that has been submitted but not approved; does not represent an existing activity @@ -1083,7 +1083,7 @@ Contents - review + An article reviewing one or more other information resources (a book, one or more other articles, movies, etc) @@ -1093,7 +1093,7 @@ Contents - reviewer role + A role that encompasses both ongoing reviewer responsibility for a bibo:Collection, such as a Journal or Series, and also a review performed for a bibo:Document, such as a book, academic article or conference paper. A role that encompasses both ongoing reviewer responsibility for a bibo:Collection, such as a Journal or Series, and also a review performed for a bibo:Document, such as a book, academic article or conference paper. @@ -1103,7 +1103,7 @@ Contents - score + Written musical composition for voice or instruments or both @@ -1113,7 +1113,7 @@ Contents - screenplay + Written script for a film production, including dialogue and descriptions of gestures, actions, shooting directions @@ -1123,7 +1123,7 @@ Contents - speech + Text of a speech written in preparation for delivery of the speech. @@ -1133,7 +1133,7 @@ Contents - translation + The result of rendering a work from one language to another @@ -1143,7 +1143,7 @@ Contents - video (vivo) + Audiovisual recording in video format @@ -1153,7 +1153,7 @@ Contents - working paper + A document created as a basis for discussion or a very early draft of a formal paper @@ -1174,7 +1174,7 @@ Contents - accepted + Accepted for publication after peer reviewing @@ -1183,7 +1183,7 @@ Contents - peer reviewed + &nbsp;Peer review is the process by which articles are chosen to be included in a refereed journal. An editorial board consisting of experts in the same field as the author review the article and decide if it is authoritative enough for publication. @@ -1192,7 +1192,7 @@ Contents - published + Published document @@ -1201,7 +1201,7 @@ Contents - in press + Document to be published diff --git a/rdf/tbox/filegraph/research-resource-iao.owl b/rdf/tbox/filegraph/research-resource-iao.owl index f2e0dd49..349ddd90 100644 --- a/rdf/tbox/filegraph/research-resource-iao.owl +++ b/rdf/tbox/filegraph/research-resource-iao.owl @@ -85,7 +85,7 @@ - measurement unit label + 2009-03-16: provenance: a term measurement unit was proposed for OBI (OBI_0000176) , edited by Chris Stoeckert and @@ -107,7 +107,7 @@ of this, different, term. - objective specification + Answers the question, why did you do this experiment? OBI Plan and Planned Process/Roles Branch @@ -128,7 +128,7 @@ of this, different, term. - action specification + Alan Ruttenberg OBI Plan and Planned Process branch @@ -143,10 +143,7 @@ of this, different, term. - datum label - 9/22/11 BP: changed the rdfs:label for this class from 'label' to 'datum label' to convey that this class is not intended to cover all kinds of labels (stickers, radiolabels, etc.), and not even all kind of textual labels, but rather the kind of labels occuring in a datum. - A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label GROUP: IAO datum label @@ -160,7 +157,7 @@ of this, different, term. - data item + 2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers. 2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum. @@ -188,7 +185,7 @@ JAR: A data item is an approximately justified approximately true approximate be - information content entity + @@ -213,7 +210,7 @@ Previous. An information content entity is a non-realizable information entity t - scalar measurement datum + 10 feet. 3 ml. 2009-03-16: we decided to keep datum singular in scalar measurement datum, as in @@ -230,7 +227,7 @@ this case we explicitly refer to the singular form - directive information entity + 8/6/2009 Alan Ruttenberg: Changed label from "information entity about a realizable" after discussions at ICBO An information content entity whose concretizations indicate to their bearer how to realize them in a process. @@ -246,7 +243,7 @@ this case we explicitly refer to the singular form - curation status specification + @@ -277,7 +274,7 @@ this case we explicitly refer to the singular form - data about an ontology part + Person:Alan Ruttenberg data about an ontology part is a data item about a part of an ontology, for example a term @@ -288,7 +285,7 @@ this case we explicitly refer to the singular form - plan specification + 2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was " a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term. Alan Ruttenberg @@ -307,7 +304,7 @@ this case we explicitly refer to the singular form - measurement datum + 2/2/2009 is_specified_output of some assay? A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device. @@ -324,7 +321,7 @@ this case we explicitly refer to the singular form - conclusion textual entity + 2009/09/28 Alan Ruttenberg. Fucoidan-use-case 2009/10/23 Alan Ruttenberg: We need to work on the definition still @@ -341,7 +338,7 @@ this case we explicitly refer to the singular form - obsolescence reason specification + @@ -367,7 +364,7 @@ this case we explicitly refer to the singular form - textual entity + A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc. AR, (IAO call 2009-09-01): a document as a whole is not typically a textual entity, because it has pictures in it - rather there are parts of it that are textual entities. Examples: The title, paragraph 2 sentence 7, etc. @@ -383,7 +380,7 @@ this case we explicitly refer to the singular form - denotator type + @@ -470,7 +467,7 @@ this case we explicitly refer to the singular form - example to be eventually removed + @@ -479,7 +476,7 @@ this case we explicitly refer to the singular form - failed exploratory term + Person:Alan Ruttenberg The term was used used in an attempt to structure part of the ontology but in retrospect failed to do a good job @@ -490,7 +487,7 @@ this case we explicitly refer to the singular form - metadata complete + Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete. @@ -500,7 +497,7 @@ this case we explicitly refer to the singular form - organizational term + term created to ease viewing/sort terms for development purpose, and will not be included in a release @@ -510,7 +507,7 @@ this case we explicitly refer to the singular form - ready for release + Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release." @@ -520,7 +517,7 @@ this case we explicitly refer to the singular form - metadata incomplete + Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors. @@ -530,7 +527,7 @@ this case we explicitly refer to the singular form - uncurated + Nothing done yet beyond assigning a unique class ID and proposing a preferred term. @@ -540,7 +537,7 @@ this case we explicitly refer to the singular form - pending final vetting + All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor. @@ -550,7 +547,7 @@ this case we explicitly refer to the singular form - core + Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes. PERSON: Alan Ruttenberg PERSON: Melanie Courtot @@ -562,7 +559,7 @@ this case we explicitly refer to the singular form - placeholder removed + @@ -571,7 +568,7 @@ this case we explicitly refer to the singular form - terms merged + An editor note should explain what were the merged terms and the reason for the merge. @@ -581,7 +578,7 @@ this case we explicitly refer to the singular form - term imported + This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use. @@ -591,7 +588,7 @@ this case we explicitly refer to the singular form - term split + This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created. @@ -601,7 +598,7 @@ this case we explicitly refer to the singular form - universal + A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf Alan Ruttenberg Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents. @@ -613,7 +610,7 @@ this case we explicitly refer to the singular form - defined class + "definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal. A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal Alan Ruttenberg @@ -625,7 +622,7 @@ this case we explicitly refer to the singular form - named class expression + A named class expression is a logical expression that is given a name. The name can be used in place of the expression. Alan Ruttenberg named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions @@ -637,7 +634,7 @@ this case we explicitly refer to the singular form - to be replaced with external ontology term + Alan Ruttenberg Terms with this status should eventually replaced with a term from another ontology. group:OBI @@ -649,7 +646,7 @@ this case we explicitly refer to the singular form - requires discussion + A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues. Alan Ruttenberg group:OBI diff --git a/rdf/tbox/filegraph/research-resource.owl b/rdf/tbox/filegraph/research-resource.owl index 5c65f646..51ff02e9 100644 --- a/rdf/tbox/filegraph/research-resource.owl +++ b/rdf/tbox/filegraph/research-resource.owl @@ -47,7 +47,7 @@ - instrument + @@ -69,7 +69,7 @@ - service + A DNA sequencing service performed by a core lab. An information content entity that describes a service performed by a person or organization with the objective of performing a technique, providing training, providing storage of data or material entities, or providing access to resources for another person or organization @@ -85,7 +85,7 @@ - reagent + @@ -120,7 +120,7 @@ - technique + A technique is a planned process used to accomplish a specific activity or task. Flow cytometry is a technique. @@ -135,7 +135,7 @@ - service provider role + A role inhering in a person or organization that is realized when the bearer participates in providing a service to meet the need of another person or thing. A technician in a core laboratory. @@ -151,7 +151,7 @@ - research project + @@ -172,7 +172,7 @@ - biological specimen + @@ -195,7 +195,7 @@ - software + A general term primarily used for digitally stored data such as computer programs and other kinds of information read and written by computers. IAO is a planned specification, in SWO is an Information artifact. In eagle-i, we have a need to collect material instances and is it thus currently classified as a material entity. @@ -211,7 +211,7 @@ - access service + A service offering that describes a service in which the consumer receives the right to use a resource (instrument, database, software, etc) that is owned or managed by a service provider. Ownership of the accessed resource remains with the service provider during and after provision of service. Allowing access to a microscope in a core lab. @@ -226,7 +226,7 @@ - storage service + A computer server. A service offering that describes a service in which the consumer provides some material or data as input which a service provider stores and returns as output. @@ -241,7 +241,7 @@ - training service + A service offering that describes a service in which the provider offers educational materials or events, such as courses, workshops or graduate programs, to the service consumer Coordinate with NIF. NIF ID: nlx_res_20090444 @@ -256,7 +256,7 @@ - material processing service + A service offering that describes a service in which the provider makes physical changes to a specified input material entity with the objective of producing a new material entity form input materials, or modifying the input material entity, and returning this as output to the service consumer Biopsy service. @@ -271,7 +271,7 @@ - material analysis service + An analysis service offering that describes a service in which the consumer provides some input material and a service provider performs some analysis of this material to generate data that is returned to the service consumer. Coordinate with NIF: NIF ID: nlx_res_20090420 @@ -286,7 +286,7 @@ - material production service + A material processing service offering that describes a service in which the provider makes physical changes to a specified input material that produce a new entity as specified output that is returned the service consumer. The specified output of a material production service can be contained within, derived from, or synthesized from specified input materials, but it represents a material entity that is of a distinct type from any of the specified input materials. Coordinate with NIF. NIF ID: nlx_res_20090418 @@ -302,7 +302,7 @@ - risk management + A technique used for identification, assessment, and prioritization of risks followed by coordinated and economical application of resources to minimize, monitor, and control the probability and/or impact of unfortunate events or to maximize the realization of opportunities. PERSON: Nicole Vasilevsky @@ -317,7 +317,7 @@ - research electronic datacapture + A technique designed for the collection of clinical data in electronic format for use mainly in human clinical trials. Electronic health records. @@ -329,7 +329,7 @@ - licensing + A technique that authorizes a use (such as copying software or using a (patented) invention) to a licensee, sparing the licensee from a claim of infringement brought by the licensor. Licensing of a new technology. @@ -343,7 +343,7 @@ - transport service + A service offering that describes a service in which the provider facilitates the transport of some material entity to a specified destination for the service consumer. PERSON: Matt Brush @@ -357,7 +357,7 @@ - support service + A service offering that describes a service in which the provider assists the consumer in activities directly or indirectly associated with the production and analysis or experimental research data. PERSON: Matt Brush @@ -371,7 +371,7 @@ - material storage service + A storage service offering that describes a service in which the consumer provides some material as input which a service provider stores and returns as output Cryopreservation service. @@ -385,7 +385,7 @@ - data storage service + A storage service offering that describes a service in which the consumer provides data as input, which a service provider stores and returns as output in its original form. PERSON: Matt Brush @@ -399,7 +399,7 @@ - maintenance service + A service offering that describes a service in which the provider actively maintains a material or data resource (e.g. a model organism colony or database) for the service consumer. This may involved making physical alterations to the material or data with the goal of maintaining its integrity or features. PERSON: Matt Brush @@ -412,7 +412,7 @@ - material maintenance service + A maintenance service offering that describes a service in which the provider actively maintains a material resource (e.g. a model organism colony) for the service consumer. A material maintenance service may or may not include storage of the material input. Maintaining an animal coloy. @@ -426,7 +426,7 @@ - data maintenance service + A maintenance service offering that describes a service in which the provider actively manages or maintains data or a database for the service consumer. Maintenance of the data is performed to maintain its integrity or enhance its quality or utility for the consumer, but new data is not generated as a result of the maintenance. Maintaining a database. @@ -440,7 +440,7 @@ - analysis service + A service offering that describes a service in which the consumer provides some input material or data and a service provider returns data about the input material or data. Flow cytometry analysis service. @@ -454,7 +454,7 @@ - data analysis service + An analysis service offering that describes a service in which the consumer provides some input data and a service provider transforms, models, or interprets the input data and returns this generated data as output PERSON: Matt Brush @@ -470,7 +470,7 @@ - material modification service + A material processing service offering that describes a service in which the provider makes physical modifications to a specified input material, such that at least one of the specified outputs of this process is a modified version of a specified input material. Histology service. @@ -483,7 +483,7 @@ - database + A database is an organized collection of data, today typically in digital form. Just a place horder. It will probably be replaced by NIF term: http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Resource.owl#nlx_res_20090405 @@ -494,7 +494,7 @@ - planned process + 'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.) Bjoern Peters diff --git a/rdf/tbox/filegraph/role.owl b/rdf/tbox/filegraph/role.owl index 4c6bc827..d2d2d4ad 100644 --- a/rdf/tbox/filegraph/role.owl +++ b/rdf/tbox/filegraph/role.owl @@ -53,7 +53,7 @@ - administrator role + @@ -61,7 +61,7 @@ - leader role + A broad-ranging leader concept, from leading a small temporary committee to head of a large international organization. A leadership role @@ -71,7 +71,7 @@ - member role + A role of being a member in a Process or an Organization @@ -80,7 +80,7 @@ - researcher role + A role of conducting funded or unfunded research, sometimes linked to an Agreement. Examples of research can be seen at: http://www.ufl.edu/research/products/index.html. Note these may have been funded, but the research doesn't have to be funded. Also, the research may be linked to an Agreement (for example, a Grant), but does not need to be. @@ -91,7 +91,7 @@ - Advisee Role + @@ -100,7 +100,7 @@ - Advisor Role + diff --git a/rdf/tbox/filegraph/skos-vivo.owl b/rdf/tbox/filegraph/skos-vivo.owl index cc614d32..35333701 100644 --- a/rdf/tbox/filegraph/skos-vivo.owl +++ b/rdf/tbox/filegraph/skos-vivo.owl @@ -54,7 +54,7 @@ - document status + The status of a document with respect to its publication. The status of a document with respect to its publication. The statuses are represented as individuals of this class. Use the "show all individuals of this class" button on the class control panel to see the currently defined statuses. @@ -69,7 +69,7 @@ - Thesis Degree + Different from general academic degree, thesis degree is achieved through one's completed thesis. Thesis is a document submitted in support of candidature for a degree or professional qualification presenting the author's research and findings(http://en.wikipedia.org/wiki/Thesis_or_dissertation). Doctor of Philosophy (Ph.D.) @@ -84,7 +84,7 @@ - academic degree + An academic degree at any level, both as reported by individuals for employment and as offered by academic degree programs. B.A. Bachelor of Arts @@ -96,7 +96,7 @@ - award or honor + An Award or Honor An Award or Honor @@ -108,7 +108,7 @@ - Certificate + A document confirming certain characteristics of a person or organization, usually provided by some form of external review, education, or assessment. A document confirming certain characteristics of a person or organization, usually provided by some form of external review, education, or assessment. @@ -119,7 +119,7 @@ - credential + An attestation of qualification, competence, or authority issued to an individual by a third party with a relevant or de facto authority or assumed competence to do so. An attestation of qualification, competence, or authority issued to an individual by a third party with a relevant or de facto authority or assumed competence to do so. @@ -130,7 +130,7 @@ - date/time value precision + Indicates the precision of the value of a DateTimeValue instance. @@ -140,7 +140,7 @@ - License + Licenses are usually issued in order to regulate some activity that is deemed to be dangerous or a threat to the person or the public or which involves a high level of specialized skill. See also core:Licensure. Official or legal permission to do something diff --git a/rdf/tbox/filegraph/teaching.owl b/rdf/tbox/filegraph/teaching.owl index e12befb9..bf97d75c 100644 --- a/rdf/tbox/filegraph/teaching.owl +++ b/rdf/tbox/filegraph/teaching.owl @@ -53,7 +53,7 @@ - course + A course as taught in one time period (such as a semester; although note that a course could consist of only one meeting (teaching session)) by one or more instructors, normally but not always for credit. Does not represent either each meeting of the course or the course offering such as Biology 101 taught every semester from 1980 to 2010 A course as taught in one time period by one or more instructors, normally but not always for credit. Does not represent either each meeting of the course or the course offering such as Biology 101 taught every semester from 1980 to 2010 @@ -64,7 +64,7 @@ - teacher role + A role of serving as an educator diff --git a/rdf/tbox/filegraph/vitroPublic.owl b/rdf/tbox/filegraph/vitroPublic.owl index d1f51520..c4bac860 100644 --- a/rdf/tbox/filegraph/vitroPublic.owl +++ b/rdf/tbox/filegraph/vitroPublic.owl @@ -66,4 +66,4 @@ - \ No newline at end of file + diff --git a/rdf/tbox/firsttime/labels.rdf b/rdf/tbox/firsttime/labels.rdf new file mode 100644 index 00000000..bddbcbd5 --- /dev/null +++ b/rdf/tbox/firsttime/labels.rdf @@ -0,0 +1,2410 @@ + + + pubmed central id + + + Software + + + has language (vcard dp) + + + Note + + + offered by + + + is this person a corresponding author? + + + Date/Time Value + + + Seminar Series + + + patient id + + + supplemental information + + + Geo + + + chapter + + + year-month-day-time value + + + student + + + is quality measured as + + + version + + + Female + + + year value + + + Phase 1 Clinical Trial + + + assignee for + + + organization name + + + Company + + + Non-Academic Position + + + has organizational unit name + + + Licensure + + + sici + + + in press + + + Curation Status Specification + + + pending final vetting + + + place of publication + + + Government Agency + + + narrower term + + + License + + + has monetary amount + + + Person + + + has grain + + + Identification + + + start page + + + uncurated + + + report identifier + + + Security + + + has calendar request + + + manuscript + + + metadata incomplete + + + Presentation + + + has time zone + + + Other + + + relates + + + has calendar link + + + has role + + + Technique + + + Subnational Region + + + Data about an Ontology Part + + + ready for release + + + Organization Name + + + has input type + + + research area of + + + Reagent + + + reproduces + + + Textual Entity + + + calendar request + + + Faculty Member Emeritus + + + organizational unit name + + + Video + + + mentions + + + submitted + + + has output type + + + Issue + + + organizational term + + + uid + + + Post-Baccalaureate Trainee + + + Academic Year + + + related + + + implements + + + locality + + + Service + + + achieves_objective + + + access provided by + + + metadata complete + + + Attendee Role + + + geographic location of + + + invited + + + News Release + + + is encoded in + + + Authorship + + + Workshop + + + Instrument + + + contributes to + + + pubmed identifier + + + gender + + + Film + + + Consortium + + + Periodical + + + direct costs + + + Continent + + + objective achieved by operation + + + Support Service + + + features + + + Certification + + + featured in + + + Clinical Role + + + datum label + + + Peer Reviewer Role + + + Extension Unit + + + distributor + + + eligible for + + + Transport Service + + + Child + + + affirmed by + + + Organizational + + + has eligibility requirment + + + Service-Providing Lab + + + assigned by + + + Facility + + + expiration 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