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updating generator for inclusion of external/user-defined concepts to prevent errors when clicking on edit link for concept from profile page

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hjkhjk54 2012-03-16 19:40:32 +00:00
parent 6963c32e6b
commit ec0792f7c0
1 changed files with 112 additions and 97 deletions
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209
src/edu/cornell/mannlib/vitro/webapp/edit/n3editing/configuration/generators/AddAssociatedConceptGenerator.java
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@ -1,64 +1,64 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
/*
Copyright (c) 2012, Cornell University
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
* Neither the name of Cornell University nor the names of its contributors
may be used to endorse or promote products derived from this software
without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*/
package edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators;
import java.util.Arrays;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collections;
import java.util.Comparator;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Set;
import org.apache.commons.lang.StringUtils;
import javax.servlet.http.HttpSession;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.vivoweb.webapp.util.ModelUtils;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.DateTimeWithPrecisionVTwo;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.DateTimeIntervalValidationVTwo;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.EditConfigurationUtils;
import edu.cornell.mannlib.vitro.webapp.dao.jena.QueryUtils;
import com.hp.hpl.jena.rdf.model.Literal;
import com.hp.hpl.jena.rdf.model.Model;
import com.hp.hpl.jena.vocabulary.RDFS;
import com.hp.hpl.jena.vocabulary.RDF;
import com.hp.hpl.jena.vocabulary.RDFS;
import com.hp.hpl.jena.vocabulary.XSD;
import com.hp.hpl.jena.ontology.OntModel;
import edu.cornell.mannlib.vitro.webapp.beans.DataProperty;
import edu.cornell.mannlib.vitro.webapp.beans.DataPropertyComparator;
import edu.cornell.mannlib.vitro.webapp.beans.DataPropertyStatement;
import edu.cornell.mannlib.vitro.webapp.beans.Individual;
import edu.cornell.mannlib.vitro.webapp.beans.ObjectProperty;
import edu.cornell.mannlib.vitro.webapp.beans.ObjectPropertyStatement;
import edu.cornell.mannlib.vitro.webapp.beans.VClass;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
import edu.cornell.mannlib.vitro.webapp.dao.DisplayVocabulary;
import edu.cornell.mannlib.vitro.webapp.dao.VitroVocabulary;
import edu.cornell.mannlib.vitro.webapp.dao.WebappDaoFactory;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.EditConfigurationUtils;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.EditConfigurationVTwo;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.Field;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator.AuthorshipInfo;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.AddAssociatedConceptsPreprocessor;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.RoleToActivityPredicatePreprocessor;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.validators.AntiXssValidation;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.processEdit.RdfLiteralHash;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.EditN3GeneratorVTwo;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.SelectListGeneratorVTwo;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.FieldVTwo;
import edu.cornell.mannlib.vitro.webapp.web.MiscWebUtils;
import edu.cornell.mannlib.vitro.webapp.search.beans.ProhibitedFromSearch;
import edu.cornell.mannlib.vitro.webapp.utils.FrontEndEditingUtils;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.AddAssociatedConceptsPreprocessor;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.validators.AntiXssValidation;
import edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService.ConceptSearchServiceUtils;
import edu.cornell.mannlib.vitro.webapp.utils.FrontEndEditingUtils.EditMode;
import edu.cornell.mannlib.vitro.webapp.utils.generators.EditModeUtils;
/**
* Generates the edit configuration for importing concepts from external
* search services, e.g. UMLS etc.
@ -69,81 +69,96 @@ import edu.cornell.mannlib.vitro.webapp.utils.generators.EditModeUtils;
public class AddAssociatedConceptGenerator extends VivoBaseGenerator implements EditConfigurationGenerator {
private Log log = LogFactory.getLog(AddAssociatedConceptGenerator.class);
private boolean isObjectPropForm = false;
private String subjectUri = null;
private String predicateUri = null;
private String objectUri = null;
private String datapropKeyStr= null;
private int dataHash = 0;
private DataPropertyStatement dps = null;
private String dataLiteral = null;
private String template = "addAssociatedConcept.ftl";
private static HashMap<String,String> defaultsForXSDtypes ;
private static String SKOSConceptType = "http://www.w3.org/2004/02/skos/core#Concept";
@Override
public EditConfigurationVTwo getEditConfiguration(VitroRequest vreq, HttpSession session) {
EditConfigurationVTwo editConfiguration = new EditConfigurationVTwo();
initBasics(editConfiguration, vreq);
initPropertyParameters(vreq, session, editConfiguration);
initObjectPropForm(editConfiguration, vreq);
editConfiguration.setTemplate(template);
setVarNames(editConfiguration);
//Assumes this is a simple case of subject predicate var
editConfiguration.setN3Required(this.generateN3Required(vreq));
//n3 optional
editConfiguration.setN3Optional(this.generateN3Optional());
//Todo: what do new resources depend on here?
//In original form, these variables start off empty
editConfiguration.setNewResources(generateNewResources(vreq));
//In scope
this.setUrisAndLiteralsInScope(editConfiguration, vreq);
//on Form
this.setUrisAndLiteralsOnForm(editConfiguration, vreq);
editConfiguration.setFilesOnForm(new ArrayList<String>());
//Sparql queries
this.setSparqlQueries(editConfiguration, vreq);
//set fields
setFields(editConfiguration, vreq, EditConfigurationUtils.getPredicateUri(vreq));
setTemplate(editConfiguration, vreq);
//No validators required here
//Add preprocessors
addPreprocessors(editConfiguration, vreq.getWebappDaoFactory());
//Adding additional data, specifically edit mode
addFormSpecificData(editConfiguration, vreq);
//One override for basic functionality, changing url pattern
//and entity
//Adding term should return to this same page, not the subject
//Return takes the page back to the individual form
editConfiguration.setUrlPatternToReturnTo(EditConfigurationUtils.getFormUrlWithoutContext(vreq));
editConfiguration.addValidator(new AntiXssValidation());
//prepare
prepare(vreq, editConfiguration);
return editConfiguration;
initBasics(editConfiguration, vreq);
initPropertyParameters(vreq, session, editConfiguration);
initObjectPropForm(editConfiguration, vreq);
editConfiguration.setTemplate(template);
setVarNames(editConfiguration);
// Assumes this is a simple case of subject predicate var
editConfiguration.setN3Required(this.generateN3Required(vreq));
// n3 optional
editConfiguration.setN3Optional(this.generateN3Optional());
// Todo: what do new resources depend on here?
// In original form, these variables start off empty
editConfiguration.setNewResources(generateNewResources(vreq));
// In scope
this.setUrisAndLiteralsInScope(editConfiguration, vreq);
// on Form
this.setUrisAndLiteralsOnForm(editConfiguration, vreq);
editConfiguration.setFilesOnForm(new ArrayList<String>());
// Sparql queries
this.setSparqlQueries(editConfiguration, vreq);
// set fields
setFields(editConfiguration, vreq, EditConfigurationUtils
.getPredicateUri(vreq));
setTemplate(editConfiguration, vreq);
// No validators required here
// Add preprocessors
addPreprocessors(editConfiguration, vreq.getWebappDaoFactory());
// Adding additional data, specifically edit mode
addFormSpecificData(editConfiguration, vreq);
// One override for basic functionality, changing url pattern
// and entity
// Adding term should return to this same page, not the subject
// Return takes the page back to the individual form
editConfiguration.setUrlPatternToReturnTo(EditConfigurationUtils
.getFormUrlWithoutContext(vreq));
editConfiguration.addValidator(new AntiXssValidation());
// prepare
prepare(vreq, editConfiguration);
return editConfiguration;
}
//In this case, the generator is not equipped to handle any deletion
//Editing in the usual sense does not exist for this form
//So we will disable editing
@Override
void initObjectPropForm(EditConfigurationVTwo editConfiguration,VitroRequest vreq) {
editConfiguration.setObject( null );
}
//Ensuring that editing property logic does not get executed on processing
//since form's deletions are handled separately
@Override
void prepare(VitroRequest vreq, EditConfigurationVTwo editConfig) {
Model model = vreq.getJenaOntModel();
//Set subject and predicate uri
if( editConfig.getSubjectUri() == null)
editConfig.setSubjectUri( EditConfigurationUtils.getSubjectUri(vreq));
if( editConfig.getPredicateUri() == null )
editConfig.setPredicateUri( EditConfigurationUtils.getPredicateUri(vreq));
//Always set creation
editConfig.prepareForNonUpdate(model);
}
private void setVarNames(EditConfigurationVTwo editConfiguration) {
editConfiguration.setVarNameForSubject("subject");
editConfiguration.setVarNameForPredicate("predicate");
editConfiguration.setVarNameForObject("conceptNode");
//We are not including concept node here since
//we never actually "edit" using this form
//the n3 required and optional will still be evaluated based on the form
editConfiguration.setVarNameForObject("object");
}
protected void setTemplate(EditConfigurationVTwo editConfiguration,