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NIHVIVO-387 removed Pellet configuration text from install.html

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brianjlowe 2011-07-11 19:43:08 +00:00
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doc/install.html
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@ -194,9 +194,6 @@
<li>
<a href="#tomcat_connector">Setup Apache Tomcat Connector</a>
</li>
<li>
<a href="#pellet">Configure Pellet Reasoner</a>
</li>
<li>
<a href="#external_auth">Using an External Authentication
System with VIVO</a>
@ -836,48 +833,7 @@
&lt;/Context&gt;<br>
...
</pre>
<h3 id="pellet">XII. Configure Pellet Reasoner </h3>
<p>
This optional configuration step is only applicable to VIVO installations
running in RDB mode (See section <a href="triple_store">Choose Triple Store</a>
for details).
VIVO uses the Pellet engine to perform reasoning, which runs in the
background at startup and also when the knowledge base is edited. VIVO
continues serving pages while the reasoner continues working; when the
reasoner finishes, the new inferences appear. Inferred statements are
cached in a database graph so that they are available immediately when
VIVO is restarted.
</p>
<p>
By default, Pellet is fed only an incomplete view of your ontology
and only certain inferences are materialized. These include rdf:type,
rdfs:subClassOf, owl:equivalentClass, and owl:disjointWith. This mode
is typically suitable for ontologies with a lot of instance data. If
you would like to keep the default mode, skip to the next step.
</p>
<p>
To enable "complete" OWL inference (materialize all significant
entailed statements), open "vitro-core/webapp/config/web.xml" and
search for PelletReasonerSetup.
</p>
<p>
Then change the name of the listener class to
PelletReasonerSetupComplete. Because "complete" reasoning can be very
resource intensive, there is also an option to materialize nearly all
inferences except owl:sameAs and owl:differentFrom.
</p>
<p>
This is enabled by specifying PelletReasonerSetupPseudocomplete.
For ontologies with large numbers of individuals, this mode can offer
enormous performance improvements over the "complete" mode.
</p>
<p>
Finally, a class called
PelletReasonerSetupPseudocompleteIgnoreDataproperties is provided to
improve performance on ontologies with large literals where data
property entailments are not needed.
</p>
<h3 id="external_auth">XIII. Using an External Authentication System
<h3 id="external_auth">XII. Using an External Authentication System
with VIVO </h3>
<p>
</p>