[VIVO-1415] Add publication claiming from PubMed and CrossRef (#129)
* Claiming interface for DOI and PMID * Allow http://doi.org urls in the claim process * Make button i18n compliant * Check Editor already claimed, error for no citation, PUMCIDs fixed * Fixed gnarly DOI containing semi-colon (removed semi-colon as separator), match more DOI formats internally, improve AUTH restrictions * Add Wilma themes * Add permissions to allow proxy editors * Update DOI resolver URI for content negotiation * CSS changes to prevent layout problems in admin pages * Add selectable list of publication types on import Resolves to https://jira.duraspace.org/browse/VIVO-1415
This commit is contained in:
Graham Triggs
Andrew Woods
parent
0a08c2890d
commit
f597b7ee42
31 changed files with 4197 additions and 9 deletions
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@ -810,3 +810,55 @@ role_in_presentation_capitalized=Role in Presentation
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advisee_capitalized_first_name=First Name
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advisee_capitalized_lastname=Last Name
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# Messages for creating and linking resources (publications)
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create_and_link_enter=Enter {0}:
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create_and_link_claim_for=Claiming works for<br />{0}
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create_and_link_confirm_works=Confirm your work(s)
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create_and_link_confirm_works_intro=Please check that these are the work(s) that you wish to claim, and indicate your relationship with them.
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create_and_link_authors=Authors
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create_and_link_authors_desc=If you are an author of a work, please select your name in the author list.<br />Retrieved metadata may be incomplete. If you can not see your name listed, select "Unlisted Author".
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create_and_link_editors=Editors
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create_and_link_editors_desc=If you edited the work, please select "Editor".
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create_and_link_not_mine_desc=If you do not wish to claim a work, select "This is not my work".
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create_and_link_already_claimed=You have already claimed this work.
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create_and_link_unlisted_author=Unlisted Author
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create_and_link_editor=Editor
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create_and_link_not_mine=This is not my work
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create_and_link_remaining=There are {0} ids remaining
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create_and_link_thank_you=Thank you
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create_and_link_finished=There are no more works left to claim.<br />You may enter more IDs below, or view your profile.
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create_and_link_go_profile=Go to profile
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create_and_link_enter_dois_intro=You may enter one or more DOIs to match, and can be entered either as an ID or URL:<br /><br />e.g.
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create_and_link_enter_dois_supported=Currently, DOIs issued by Crossref, DataCite and mEDRA are supported.<br />Each DOI should be separated by a comma or new line.
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create_and_link_enter_pmid_intro=You may enter one or more PubMed IDs to match. Each ID should be separated by a comma or new line.
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create_and_link_enter_pmid_supported=Note that metadata will be retrieved from Crossref, if the PubMed ID can be resolved to a DOI.
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create_and_link_unknown_profile=Unknown Profile
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create_and_link_unknown_resource=Unknown Resource Type
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create_and_link_unauthorized_for_profile=You do not have permissions to claim for this user
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create_and_link_submit_ids=Submit IDs
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create_and_link_submit_confirm=Confirm
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create_and_link_error=Unable to retrieve citation details
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create_and_link_type_article=Article
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create_and_link_type_article_journal=Journal Article
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create_and_link_type_book=Book
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create_and_link_type_chapter=Chapter
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create_and_link_type_dataset=Dataset
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create_and_link_type_figure=Image
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create_and_link_type_graphic=Image
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create_and_link_type_legal_case=Legal Case
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create_and_link_type_legislation=Legislation
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create_and_link_type_manuscript=Manuscript
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create_and_link_type_map=Map
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create_and_link_type_musical_score=Musical Score
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create_and_link_type_paper_conference=Conference Paper
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create_and_link_type_patent=Patent
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create_and_link_type_personal_communication=Letter
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create_and_link_type_post_weblog=Blog
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create_and_link_type_report=Report
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create_and_link_type_review=Review
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create_and_link_type_speech=Speech
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create_and_link_type_thesis=Thesis
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create_and_link_type_webpage=Webpage
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claim_publications_by=Claim publications by
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claim_publications_by_doi=DOI
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claim_publications_by_pmid=PubMed ID
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BIN
webapp/src/main/webapp/images/createAndLink/error.png
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webapp/src/main/webapp/images/createAndLink/error.png
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After Width: | Height: | Size: 2.9 KiB |
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webapp/src/main/webapp/images/createAndLink/tick.png
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webapp/src/main/webapp/images/createAndLink/tick.png
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After Width: | Height: | Size: 7.3 KiB |
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@ -0,0 +1,111 @@
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<#setting number_format="computer">
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<form id="createAndLink" method="post">
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<#if personLabel??>
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<div class="claim-for">
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<h3>${i18n().create_and_link_claim_for(personLabel)}</h3>
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<#if personThumbUrl??>
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<img src="${urls.base}${personThumbUrl}" />
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</#if>
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</div>
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</#if>
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<h2>${i18n().create_and_link_confirm_works}</h2>
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${i18n().create_and_link_confirm_works_intro}<br /><br />
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<h4>${i18n().create_and_link_authors}</h4>
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<div class="description">${i18n().create_and_link_authors_desc}</div><br />
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<h4>${i18n().create_and_link_editors}</h4>
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<div class="description">${i18n().create_and_link_editors_desc}</div><br /><br />
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${i18n().create_and_link_not_mine_desc}<br /><br />
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<#list citations as citation>
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<div class="entryId">
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<#if citation.externalProvider??>
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${citation.externalProvider?upper_case}: ${citation.externalId?html}
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<#else>
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ID: ${citation.externalId?html}
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</#if>
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</div>
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<#if citation.type?has_content>
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<select name="type${citation.externalId}">
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<#list publicationTypes as publicationType>
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<option value="${publicationType.uri}" <#if publicationType.uri == citation.typeUri>selected</#if>>${publicationType.label}</option>
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</#list>
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</select><br/>
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</#if>
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<div class="entry">
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<#if citation.showError>
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<div class="citation_error">
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${i18n().create_and_link_error}
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</div>
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<#else>
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<!-- Output Citation -->
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<#if citation.alreadyClaimed>
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<div class="citation_claimed">
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</#if>
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<input type="hidden" name="externalId" value="${citation.externalId!}" />
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<div class="citation">
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<#assign proposedAuthor=false />
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<#if citation.title??><span class="citation_title">${citation.title?html}</span><br /></#if>
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<#assign formatted_citation>
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<#if citation.journal??><span class="citation_journal">${citation.journal?html}</span></#if>
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<#if citation.publicationYear??><span class="citation_year">${citation.publicationYear!?html};</span></#if>
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<#if citation.volume??><span class="citation_volume">${citation.volume!?html}</#if>
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<#if citation.issue??><span class="citation_issue">(${citation.issue!?html})</#if>
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<#if citation.pagination??><span class="citation_pages">:${citation.pagination!?html}</#if>
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</#assign>
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<#if formatted_citation??>
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${formatted_citation}<br />
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</#if>
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<#if citation.authors??>
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<#list citation.authors as author>
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<#if author??>
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<span class="citation_author">
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<#if citation.alreadyClaimed>
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<span>${author.name!?html}</span>
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<#else>
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<#if author.name??>
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<#if !author.linked>
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<input type="radio" id="author${citation.externalId}-${author?counter}" name="contributor${citation.externalId}" value="author${author?counter}" <#if author.proposed>checked</#if> class="radioWithLabel" />
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<label for="author${citation.externalId}-${author?counter}" class="labelForRadio">${author.name!?html}</label>
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<#if author.proposed><#assign proposedAuthor=true /></#if>
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<#else>
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<span class="linked">${author.name!?html}</span>
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</#if>
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</#if>
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</#if>
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</span>
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</#if>
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<#sep>; </#sep>
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</#list><br />
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</#if>
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</div>
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<#if citation.alreadyClaimed>
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<span class="claimed">${i18n().create_and_link_already_claimed}</span>
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<#else>
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<input type="radio" id="author${citation.externalId}" name="contributor${citation.externalId}" value="author" <#if !proposedAuthor>checked</#if> class="radioWithLabel" /><label for="author${citation.externalId}" class="labelForRadio"> ${i18n().create_and_link_unlisted_author}</label><br />
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<input type="radio" id="editor${citation.externalId}" name="contributor${citation.externalId}" value="editor" class="radioWithLabel" /><label for="editor${citation.externalId}" class="labelForRadio"> ${i18n().create_and_link_editor}</label><br />
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<input type="radio" id="notmine${citation.externalId}" name="contributor${citation.externalId}" value="notmine" class="radioWithLabel" /><label for="notmine${citation.externalId}" class="labelForRadio"> ${i18n().create_and_link_not_mine}</label><br />
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</#if>
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<input type="hidden" name="externalResource${citation.externalId}" value="${citation.externalResource!?html}" />
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<input type="hidden" name="externalProvider${citation.externalId}" value="${citation.externalProvider!?html}" />
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<input type="hidden" name="vivoUri${citation.externalId}" value="${citation.vivoUri!?html}" />
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<input type="hidden" name="profileUri" value="${profileUri!}" />
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<#if citation.alreadyClaimed>
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</div>
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</#if>
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</#if>
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<div style="clear: both;"></div>
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</div>
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<br/>
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<!-- End Citation -->
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</#list>
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<#if remainderIds??>
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<input type="hidden" name="remainderIds" value="${remainderIds}" />
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</#if>
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<div class="buttons">
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<input type="hidden" name="action" value="confirmID" />
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<input type="submit" value="${i18n().create_and_link_submit_confirm}" class="submit" />
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<#if remainderCount??>
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<span class="remainder">${i18n().create_and_link_remaining(remainderCount)}</span>
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</#if>
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</div>
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</form>
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@ -0,0 +1,35 @@
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<form id="createAndLink" method="post">
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<#if personLabel??>
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<div class="claim-for">
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<h3>${i18n().create_and_link_claim_for(personLabel)}</h3>
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<#if personThumbUrl??>
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<img src="${urls.base}${personThumbUrl}" />
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</#if>
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</div>
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</#if>
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<#if showConfirmation??>
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<h2>${i18n().create_and_link_thank_you}</h2>
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${i18n().create_and_link_finished}<br /><br />
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<#if profileUri??>
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<a href="${profileUrl(profileUri)}">${i18n().create_and_link_go_profile}</a><br /><br />
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</#if>
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</#if>
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<h2>${i18n().create_and_link_enter(label)}</h2>
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<#switch provider>
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<#case "doi">
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${i18n().create_and_link_enter_dois_intro}<br />
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<i>ID</i>: 10.1038/nature01234<br />
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<i>URL</i>: https://doi.org/10.1038/nature01234<br />
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<br />
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${i18n().create_and_link_enter_dois_supported}<br /><br />
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<#break>
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<#case "pmid">
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${i18n().create_and_link_enter_pmid_intro}<br /><br />
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${i18n().create_and_link_enter_pmid_supported}<br /><br />
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<#break>
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</#switch>
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<textarea name="externalIds" rows="15" cols="50"></textarea><br />
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<input type="submit" value="${i18n().create_and_link_submit_ids}" class="submit" /><br />
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<input type="hidden" name="action" value="findID" />
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<input type="hidden" name="profileUri" value="${profileUri!}" />
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</form>
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@ -0,0 +1 @@
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<h2>${i18n().create_and_link_unauthorized_for_profile}</h2>
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@ -0,0 +1,2 @@
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<h2>${i18n().create_and_link_unknown_profile}</h2>
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@ -0,0 +1,2 @@
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<h2>${i18n().create_and_link_unknown_resource}</h2>
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@ -0,0 +1,82 @@
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#createAndLink select {
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height: 2.5em;
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margin-top: 0px;
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margin-bottom: 0px;
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padding-bottom: 0px;
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padding-top: 0px;
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}
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#createAndLink .citation_error:before {
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content: url('../../../images/createAndLink/error.png');
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transform: scale(0.5);
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margin-top: 10px;
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margin-right: 10px;
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float: left;
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}
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#createAndLink .citation_error {
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height: 70px;
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}
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#createAndLink .citation_claimed:before {
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content: url('../../../images/createAndLink/tick.png');
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transform: scale(0.75);
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margin-top: -17px;
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margin-left: 535px;
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float: left;
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position: absolute;
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}
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#createAndLink .citation_claimed:hover:before {
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opacity: 0.2;
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}
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#createAndLink .citation_claimed .citation {
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opacity: 0.2;
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}
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#createAndLink .citation_claimed:hover .citation {
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opacity: 1.0;
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}
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#createAndLink .citation_type {
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font-style: italic;
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padding: 5px;
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}
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#createAndLink .citation_title {
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font-weight: bold;
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}
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#createAndLink .citation_journal {
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font-style: italic;
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}
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#createAndLink .claimed {
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font-weight: bold;
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}
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#createAndLink .linked {
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font-style: italic;
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}
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#createAndLink .entryId {
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background-color: #3e8baa; /* #E0E0E0; */
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color: #ffffff;
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padding: 5px;
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font-weight: bold;
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display: inline-block;
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}
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#createAndLink .entry {
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border: 2px solid #3e8baa; /* #E0E0E0; */
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padding: 5px;
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}
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#createAndLink label {
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display: inline;
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}
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#createAndLink .radioWithLabel:checked + .labelForRadio {
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font-weight: bold;
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}
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#createAndLink .description {
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padding-left: 22px;
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}
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#createAndLink .remainder {
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font-style: italic;
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}
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#createAndLink .claim-for {
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float: right;
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border: 2px solid #3e8baa; /* #E0E0E0; */
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padding: 5px;
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}
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#createAndLink .claim-for h3 {
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text-align: center;
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}
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@ -30,5 +30,6 @@ VIVO tenderfoot theme: screen styles
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@import url("page-individual.css");
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@import url("page-login.css");
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@import url("page-menu.css");
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@import url("page-createAndLink.css");
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@import url("https://fonts.googleapis.com/css?family=Noto+Sans");
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@import url("../../../local/css/local.css");
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@ -104,11 +104,23 @@
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<section itemscope itemtype="http://schema.org/Person" id="individual-intro" class="vcard person" role="region">
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<section id="individual-info" ${infoClass!} role="region">
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<!-- Overview -->
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<!-- #include "individual-overview.ftl" -->
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<!-- Geographic Focus -->
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<!-- #include "individual-geographicFocus.ftl" -->
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<#if editable>
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<#if claimSources?size > 0>
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${i18n().claim_publications_by}
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<#if claimSources?seq_contains("doi")>
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<form action="${urls.base}/createAndLink/doi" method="get" style="display: inline-block;">
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<input type="hidden" name="profileUri" value="${individual.uri}" />
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<input type="submit" class="submit" value="${i18n().claim_publications_by_doi}" />
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</form>
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</#if>
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<#if claimSources?seq_contains("pmid")>
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<form action="${urls.base}/createAndLink/pmid" method="get" style="display: inline-block;">
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<input type="hidden" name="profileUri" value="${individual.uri}" />
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<input type="submit" class="submit" value="${i18n().claim_publications_by_pmid}" />
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</form>
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</#if>
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</#if>
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</#if>
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</section>
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</section>
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#createAndLink select {
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height: 2.5em;
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margin-top: 0px;
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margin-bottom: 0px;
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padding-bottom: 0px;
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padding-top: 0px;
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}
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#createAndLink .citation_error:before {
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content: url('../../../images/createAndLink/error.png');
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transform: scale(0.5);
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margin-top: 10px;
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margin-right: 10px;
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float: left;
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}
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#createAndLink .citation_error {
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height: 70px;
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}
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#createAndLink .citation_claimed:before {
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content: url('../../../images/createAndLink/tick.png');
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transform: scale(0.75);
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margin-top: -17px;
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margin-left: 535px;
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float: left;
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position: absolute;
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}
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#createAndLink .citation_claimed:hover:before {
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opacity: 0.2;
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}
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#createAndLink .citation_claimed .citation {
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opacity: 0.2;
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}
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#createAndLink .citation_claimed:hover .citation {
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opacity: 1.0;
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}
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#createAndLink .citation_type {
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font-style: italic;
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padding: 5px;
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}
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#createAndLink .citation_title {
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font-weight: bold;
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}
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#createAndLink .citation_journal {
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font-style: italic;
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}
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#createAndLink .claimed {
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font-weight: bold;
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}
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#createAndLink .linked {
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font-style: italic;
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}
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#createAndLink .entryId {
|
||||
background-color: #3e8baa; /* #E0E0E0; */
|
||||
color: #ffffff;
|
||||
padding: 5px;
|
||||
font-weight: bold;
|
||||
display: inline-block;
|
||||
}
|
||||
#createAndLink .entry {
|
||||
border: 2px solid #3e8baa; /* #E0E0E0; */
|
||||
padding: 5px;
|
||||
}
|
||||
#createAndLink label {
|
||||
display: inline;
|
||||
}
|
||||
#createAndLink .radioWithLabel:checked + .labelForRadio {
|
||||
font-weight: bold;
|
||||
}
|
||||
#createAndLink .description {
|
||||
padding-left: 22px;
|
||||
}
|
||||
#createAndLink .remainder {
|
||||
font-style: italic;
|
||||
}
|
||||
#createAndLink .claim-for {
|
||||
float: right;
|
||||
border: 2px solid #3e8baa; /* #E0E0E0; */
|
||||
padding: 5px;
|
||||
}
|
||||
#createAndLink .claim-for h3 {
|
||||
text-align: center;
|
||||
}
|
||||
|
|
@ -24,4 +24,5 @@ VIVO wilma theme: screen styles
|
|||
|
||||
@import url("reset.css");
|
||||
@import url("wilma.css");
|
||||
@import url("page-createAndLink.css");
|
||||
@import url("../../../local/css/local.css");
|
||||
|
|
|
|||
|
|
@ -62,6 +62,23 @@
|
|||
<section id="individual-info" ${infoClass!} role="region">
|
||||
<section id="right-hand-column" role="region">
|
||||
<#include "individual-visualizationFoafPerson.ftl">
|
||||
<#if editable>
|
||||
<#if claimSources?size > 0>
|
||||
<br />${i18n().claim_publications_by}<br />
|
||||
<#if claimSources?seq_contains("doi")>
|
||||
<form action="${urls.base}/createAndLink/doi" method="get" style="float: left;">
|
||||
<input type="hidden" name="profileUri" value="${individual.uri}" />
|
||||
<input type="submit" class="submit" value="${i18n().claim_publications_by_doi}" />
|
||||
</form>
|
||||
</#if>
|
||||
<#if claimSources?seq_contains("pmid")>
|
||||
<form action="${urls.base}/createAndLink/pmid" method="get" style="float: right;">
|
||||
<input type="hidden" name="profileUri" value="${individual.uri}" />
|
||||
<input type="submit" class="submit" value="${i18n().claim_publications_by_pmid}" />
|
||||
</form>
|
||||
</#if>
|
||||
</#if>
|
||||
</#if>
|
||||
</section>
|
||||
<#include "individual-adminPanel.ftl">
|
||||
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue