Maven migration (first draft)
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Graham Triggs
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141
home/src/main/resources/config/example.applicationSetup.n3
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home/src/main/resources/config/example.applicationSetup.n3
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# ------------------------------------------------------------------------------
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#
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# This file specifies the structure of the Vitro application: which modules
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# are used, and what parameters they require.
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#
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# Most Vitro installations will not need to modify this file.
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#
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# For most installations, only the settings in the runtime.properties file will
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# be changed.
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#
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# ------------------------------------------------------------------------------
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@prefix : <http://vitro.mannlib.cornell.edu/ns/vitro/ApplicationSetup#> .
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# ----------------------------
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#
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# Describe the application by its implementing class and by references to the
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# modules it uses.
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#
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:application
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a <java:edu.cornell.mannlib.vitro.webapp.application.ApplicationImpl> ,
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<java:edu.cornell.mannlib.vitro.webapp.modules.Application> ;
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:hasSearchEngine :instrumentedSearchEngineWrapper ;
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:hasSearchIndexer :basicSearchIndexer ;
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:hasImageProcessor :jaiImageProcessor ;
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:hasFileStorage :ptiFileStorage ;
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:hasContentTripleSource :sdbContentTripleSource ;
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:hasConfigurationTripleSource :tdbConfigurationTripleSource ;
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:hasTBoxReasonerModule :jfactTBoxReasonerModule .
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# ----------------------------
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#
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# Image processor module:
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# The JAI-based implementation is the only standard option.
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# It requires no parameters.
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#
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:jaiImageProcessor
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a <java:edu.cornell.mannlib.vitro.webapp.imageprocessor.jai.JaiImageProcessor> ,
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<java:edu.cornell.mannlib.vitro.webapp.modules.imageProcessor.ImageProcessor> .
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# ----------------------------
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#
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# File storage module:
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# The PairTree-inspired implementation is the only standard option.
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# It requires no parameters.
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#
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:ptiFileStorage
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a <java:edu.cornell.mannlib.vitro.webapp.filestorage.impl.FileStorageImplWrapper> ,
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<java:edu.cornell.mannlib.vitro.webapp.modules.fileStorage.FileStorage> .
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# ----------------------------
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#
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# Search engine module:
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# The Solr-based implementation is the only standard option, but it can be
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# wrapped in an "instrumented" wrapper, which provides additional logging
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# and more rigorous life-cycle checking.
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#
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:instrumentedSearchEngineWrapper
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a <java:edu.cornell.mannlib.vitro.webapp.searchengine.InstrumentedSearchEngineWrapper> ,
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<java:edu.cornell.mannlib.vitro.webapp.modules.searchEngine.SearchEngine> ;
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:wraps :solrSearchEngine .
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:solrSearchEngine
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a <java:edu.cornell.mannlib.vitro.webapp.searchengine.solr.SolrSearchEngine> ,
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<java:edu.cornell.mannlib.vitro.webapp.modules.searchEngine.SearchEngine> .
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# ----------------------------
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#
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# Search indexer module:
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# There is only one standard implementation. You must specify the number of
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# worker threads in the thread pool.
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#
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:basicSearchIndexer
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a <java:edu.cornell.mannlib.vitro.webapp.searchindex.SearchIndexerImpl> ,
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<java:edu.cornell.mannlib.vitro.webapp.modules.searchIndexer.SearchIndexer> ;
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:threadPoolSize "10" .
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# ----------------------------
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#
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# Content triples source module: holds data contents
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# The SDB-based implementation is the default option. It reads its parameters
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# from the runtime.properties file, for backward compatibility.
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#
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# Other implementations are based on a local TDB instance, a "standard" SPARQL
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# endpoint, or a Virtuoso endpoint, with parameters as shown.
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#
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:sdbContentTripleSource
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a <java:edu.cornell.mannlib.vitro.webapp.triplesource.impl.sdb.ContentTripleSourceSDB> ,
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<java:edu.cornell.mannlib.vitro.webapp.modules.tripleSource.ContentTripleSource> .
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#:tdbContentTripleSource
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# a <java:edu.cornell.mannlib.vitro.webapp.triplesource.impl.tdb.ContentTripleSourceTDB> ,
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# <java:edu.cornell.mannlib.vitro.webapp.modules.tripleSource.ContentTripleSource> ;
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# # May be an absolute path, or relative to the Vitro home directory.
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# :hasTdbDirectory "tdbContentModels" .
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#:sparqlContentTripleSource
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# a <java:edu.cornell.mannlib.vitro.webapp.triplesource.impl.sparql.ContentTripleSourceSPARQL> ,
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# <java:edu.cornell.mannlib.vitro.webapp.modules.tripleSource.ContentTripleSource> ;
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# # The URI of the SPARQL endpoint for your triple-store.
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# :hasEndpointURI "PUT_YOUR_SPARQL_ENDPOINT_URI_HERE" ;
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# # The URI to use for SPARQL UPDATE calls against your triple-store.
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# :hasUpdateEndpointURI "PUT_THE UPDATE_URI_HERE" .
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#:virtuosoContentTripleSource
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# a <java:edu.cornell.mannlib.vitro.webapp.triplesource.impl.virtuoso.ContentTripleSourceVirtuoso> ,
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# <java:edu.cornell.mannlib.vitro.webapp.modules.tripleSource.ContentTripleSource> ;
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# # The URI where Virtuoso can be accessed: don't include the /sparql path.
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# :hasBaseURI "http://localhost:8890" ;
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# # The name and password of a Virtuoso account that has the SPARQL_UPDATE role.
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# :hasUsername "USERNAME" ;
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# :hasPassword "PASSWORD" .
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# ----------------------------
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#
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# Configuration triples source module: holds configuration data and user accounts
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# The TDB-based implementation is the only standard option.
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# It requires no parameters.
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#
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:tdbConfigurationTripleSource
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a <java:edu.cornell.mannlib.vitro.webapp.triplesource.impl.tdb.ConfigurationTripleSourceTDB> ,
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<java:edu.cornell.mannlib.vitro.webapp.modules.tripleSource.ConfigurationTripleSource> .
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# ----------------------------
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#
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# TBox reasoner module:
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# The JFact-based implementation is the only standard option.
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# It requires no parameters.
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#
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:jfactTBoxReasonerModule
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a <java:edu.cornell.mannlib.vitro.webapp.tboxreasoner.impl.jfact.JFactTBoxReasonerModule> ,
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<java:edu.cornell.mannlib.vitro.webapp.modules.tboxreasoner.TBoxReasonerModule> .
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344
home/src/main/resources/config/example.runtime.properties
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home/src/main/resources/config/example.runtime.properties
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# -----------------------------------------------------------------------------
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#
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# VIVO runtime properties
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#
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# This file is provided as example.runtime.properties.
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#
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# Save a copy of this file as runtime.properties in your Vitro home directory,
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# and edit the properties as needed for your installation.
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#
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# -----------------------------------------------------------------------------
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# -----------------------------------------------------------------------------
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# BASIC PROPERTIES
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# -----------------------------------------------------------------------------
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#
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# This namespace will be used when generating URIs for objects created in the
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# editor. In order to serve linked data, the default namespace must be composed
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# as follows (optional elements in parentheses):
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#
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# scheme + server_name (+ port) (+ servlet_context) + "/individual/"
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#
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# For example, Cornell's default namespace is:
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#
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# http://vivo.cornell.edu/individual/
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#
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Vitro.defaultNamespace = http://vivo.mydomain.edu/individual/
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#
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# The email address of the root user for the VIVO application. The password
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# for this user is initially set to "rootPassword", but you will be asked to
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# change the password the first time you log in.
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#
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rootUser.emailAddress = vivo_root@mydomain.edu
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#
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# The basic parameters for a database connection. Change the end of the
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# URL to reflect your database name (if it is not "vitrodb"). Change the username
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# and password to match the authorized database user you created.
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#
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VitroConnection.DataSource.url = jdbc:mysql://localhost/vitrodb
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VitroConnection.DataSource.username = vitrodbUsername
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VitroConnection.DataSource.password = vitrodbPassword
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#
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# Email parameters which VIVO can use to send mail. If these are left empty,
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# the "Contact Us" form will be disabled and users will not be notified of
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# changes to their accounts.
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#
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email.smtpHost = smtp.mydomain.edu
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email.replyTo = vivoAdmin@mydomain.edu
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#
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# URL of Solr context used in local VIVO search. This will usually consist of:
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# scheme + server_name + port + vivo_webapp_name + "solr"
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# In the standard installation, the Solr context will be on the same server as VIVO,
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# and in the same Tomcat instance. The path will be the VIVO webapp.name (specified
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# in build.properties) + "solr"
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# Example:
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# vitro.local.solr.url = http://localhost:8080/vivosolr
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#
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vitro.local.solr.url = http://localhost:8080/vivosolr
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# -----------------------------------------------------------------------------
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# LINKING USER ACCOUNTS TO PROFILE PAGES
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# -----------------------------------------------------------------------------
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#
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# How is a logged-in user associated with a particular Individual? One way is
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# for the Individual to have a property whose value is the username of the user.
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# This value should be the URI for that property.
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#
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selfEditing.idMatchingProperty = http://vivo.mydomain.edu/ns#networkId
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# -----------------------------------------------------------------------------
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# USING AN EXTERNAL AUTHENTICATION SYSTEM
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# -----------------------------------------------------------------------------
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#
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# If an external authentication system like Shibboleth or CUWebAuth is to be
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# used, this property says which HTTP header will contain the user ID from
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# the authentication system. If such a system is not to be used, leave this
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# commented out. Consult the installation instructions for more details.
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#
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#externalAuth.netIdHeaderName = remote_userID
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# -----------------------------------------------------------------------------
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# TUNING THE DATABASE CONNECTION POOL
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# -----------------------------------------------------------------------------
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#
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# The maximum number of active connections in the database connection pool.
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# Increase this value to support a greater number of concurrent page requests.
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#
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VitroConnection.DataSource.pool.maxActive = 40
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#
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# The maximum number of database connections that will be allowed
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# to remain idle in the connection pool. Default is 25%
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# of the maximum number of active connections.
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#
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VitroConnection.DataSource.pool.maxIdle = 10
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# -----------------------------------------------------------------------------
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# USING A DIFFERENT DATABASE
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# -----------------------------------------------------------------------------
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#
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# Parameters to change in order to use VIVO with a database other than
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# MySQL.
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#
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VitroConnection.DataSource.dbtype = MySQL
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VitroConnection.DataSource.driver = com.mysql.jdbc.Driver
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VitroConnection.DataSource.validationQuery = SELECT 1
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# Note: the above parameters allow you to change the relational database that
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# is used as the back end for Jena SDB. If you want to use a triple store
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# other than SDB, you will need to edit applicationSetup.n3. See the
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# installation instructions for more details.
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# -----------------------------------------------------------------------------
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# ADDING OPENSOCIAL GADGETS TO VIVO
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# -----------------------------------------------------------------------------
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#
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# For OpenSocial integration
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# The base URL of the ORNG Shindig server. Usually, this is the same host and port
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# number as VIVO itself, with a context path of "shindigorng".
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#
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#OpenSocial.shindigURL = http://localhost:8080/shindigorng
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#
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# For OpenSocial integration
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# The host name and port number of the service that provides security tokens for VIVO and
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# Shindig to share. For now, the host name must be the actual host, not "localhost" or "127.0.0.1"
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# The port number must be 8777
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#
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#OpenSocial.tokenService = myhost.mydomain.edu:8777
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#
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# For OpenSocial integration
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# The path to the key file that will be used qwhen generating security tokens for VIVO and
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# shindig to share.
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#
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#OpenSocial.tokenKeyFile = /usr/local/vivo/data/shindig/openssl/securitytokenkey.txt
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#
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# For OpenSocial integration
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# Only set sandbox to True for dev/test environments. Comment out or set to False in production
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#
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#OpenSocial.sandbox = True
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# -----------------------------------------------------------------------------
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# ADDING LANGUAGES TO VIVO
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# -----------------------------------------------------------------------------
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#
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# Show only the most appropriate data values based on the Accept-Language
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# header supplied by the browser. Default is false if not set.
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#
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# RDFService.languageFilter = false
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#
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# Force VIVO to use a specific language or Locale instead of those
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# specified by the browser. This affects RDF data retrieved from the model,
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# if RDFService.languageFilter is true. This also affects the text of pages
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# that have been modified to support multiple languages.
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#
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# languages.forceLocale = en_US
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#
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# A list of supported languages or Locales that the user may choose to
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# use instead of the one specified by the browser. Selection images must
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# be available in the i18n/images directory of the theme. This affects
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# RDF data retrieved from the model, if RDFService.languageFilter is true.
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# This also affects the text of pages that have been modified to support
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# multiple languages.
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#
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# This should not be used with languages.forceLocale, which will override it.
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#
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# languages.selectableLocales = en_US, es_GO
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# -----------------------------------------------------------------------------
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# ORCID INTEGRATION
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# -----------------------------------------------------------------------------
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# orcid.clientId = 0000-0000-0000-000X
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# orcid.clientPassword = 00000000-0000-0000-0000-000000000000
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# orcid.webappBaseUrl = http://localhost:8080/vivo
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# orcid.messageVersion = 1.0.23
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# orcid.externalIdCommonName = VIVO Cornell Identifier
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# ---- Setup for the sandbox ----
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# orcid.publicApiBaseUrl = http://pub.sandbox.orcid.org/v1.1
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# orcid.authorizedApiBaseUrl = http://api.sandbox.orcid.org/v1.1
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# orcid.oauthAuthorizeUrl = http://sandbox.orcid.org/oauth/authorize
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# orcid.oauthTokenUrl = http://api.sandbox.orcid.org/oauth/token
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# ---- or for the mockorcid webapp ----
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# orcid.publicApiBaseUrl = http://localhost:8080/mockorcid/mock/
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# orcid.authorizedApiBaseUrl = http://localhost:8080/mockorcid/mock/
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# orcid.oauthAuthorizeUrl = http://localhost:8080/mockorcid/mock/oauth/authorize
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# orcid.oauthTokenUrl = http://localhost:8080/mockorcid/mock/oauth/token
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# -----------------------------------------------------------------------------
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# OTHER OPTIONS
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# -----------------------------------------------------------------------------
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# AltMetric badges
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# ----------------
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# Options to embed AltMetric badges on information resource (e.g. journal article) pages
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# See the AltMetric documentation for more imformation about each option: http://api.altmetric.com/embeds.html
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# The embed code will use a DOI, or PubMed ID, if present
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# Enable AltMetric badges
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# Uncomment and set this to disabled if you don't want AltMetric badges
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#resource.altmetric=disabled
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# Display the badge to the left or right of the title (default = right)
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# Options: left, right
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#resource.altmetric.displayto=right
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# Badge type to display (default = donut)
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# Options: See AltMetric documentation - recommended settings: donut, medium-donut
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#resource.altmetric.badge-type=donut
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# Hide the badge if there are no mentions (default = true)
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# Options: true, false
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#resource.altmetric.hide-no-mentions=true
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# Display more details about the score when you hover over the badge (default = right)
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# Options, right, left, up, down
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#resource.altmetric.badge-popover=right
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# Dsiplay extended details alongside the badge (default = none)
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#resource.altmetric.badge-details=right
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#
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# When the following flag is set to enabled, the VIVO home page displays a
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# global map highlighting the geographical focus of foaf:person individuals.
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# For information on the maps, refer to this wiki page:
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# https://wiki.duraspace.org/display/VIVO/Home+Page+Customizations#HomePageCustomizations-TheGeographicFocusMap
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#
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#homePage.geoFocusMaps=enabled
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#
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# VIVO supports the simultaneous use of a full foaf:Person profile page view
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# and a "quick" page view that emphasizes the individual's webpage presence.
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# Implementing this feature requires an installation to develop a web service
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# that captures images of web pages or to use an existing service outside of VIVO.
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#
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# For more information on implementing multiple profile pages, refer to this
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# wiki page: https://wiki.duraspace.org/display/VIVO/Multiple+foaf%3APerson+Profile+Pages.
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#
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#multiViews.profilePageTypes=enabled
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#
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# Tell VIVO to generate HTTP headers on its responses to facilitate caching the
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# profile pages that it creates.
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#
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# For more information, see this wiki page:
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# https://wiki.duraspace.org/display/VIVO/Use+HTTP+caching+to+improve+performance
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#
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# Developers will likely want to leave caching disabled, since a change to a
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# Freemarker template or to a Java class would not cause the page to be
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# considered stale.
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#
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# http.createCacheHeaders = true
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#
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# Absolute path on the server of the Harvester root directory.
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# You must include the final slash.
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#
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# Setting a value for harvester.location indicates that the Harvester is installed at
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# this path. This will enable the Harvester functions in the Ingest Tools page.
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#
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# harvester.location = /usr/local/vivo/harvester/
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#
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# The temporal graph visualization is used to compare different organizations/people
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# within an organization on parameters like number of publications or grants.
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# By default, the app will attempt to make its best guess at the top level
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# organization in your instance. If you're unhappy with this selection, uncomment out
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# the property below and set it to the URI of the organization individual you want to
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# identify as the top level organization. It will be used as the default whenever the
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# temporal graph visualization is rendered without being passed an explicit org.
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# For example, to use "Ponce School of Medicine" as the top organization:
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# visualization.topLevelOrg = http://vivo.psm.edu/individual/n2862
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#
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# visualization.topLevelOrg = http://vivo.mydomain.edu/individual/topLevelOrgURI
|
||||
|
||||
#
|
||||
# The temporal graph visualization can require extensive machine resources.
|
||||
# This can have a particularly noticeable impact on memory usage if
|
||||
# - The organization tree is deep,
|
||||
# - The number of grants and publications is large.
|
||||
# VIVO 1.3 release mitigates this problem by the way of a caching mechanism &
|
||||
# hence we can safely set this to be enabled by default.
|
||||
#
|
||||
visualization.temporal = enabled
|
||||
|
||||
#
|
||||
# The co-authorship and co-investigator graphs have two variants - the traditional Flash based view,
|
||||
# and views using D3.
|
||||
# The traditional views require that users have Flash installed as a plugin, whereas D3 works on any
|
||||
# modern browser.
|
||||
# Currently, it is not possible to choose between them from the UI. You can choose to either have
|
||||
# the Flash visualizations, OR the D3 visualizations.
|
||||
# If this option is not present or set to enabled, then the D3 visualizations will be used.
|
||||
# If this option is present and set to disabled, then the Flash visualizations will be used.
|
||||
#visualization.d3 = disabled
|
||||
|
||||
#
|
||||
# Types of individual for which we can create proxy editors.
|
||||
# If this is omitted, defaults to http://www.w3.org/2002/07/owl#Thing
|
||||
#
|
||||
proxy.eligibleTypeList = http://xmlns.com/foaf/0.1/Person, http://xmlns.com/foaf/0.1/Organization
|
||||
|
||||
#
|
||||
# Default type(s) for Google Refine Reconciliation Service
|
||||
# The format for this property is id, name; id1, name1; id2, name2 etc.
|
||||
# For more information, see Service Metadata from this page:
|
||||
# http://code.google.com/p/google-refine/wiki/ReconciliationServiceApi
|
||||
#
|
||||
Vitro.reconcile.defaultTypeList = http://vivoweb.org/ontology/core#Role, core:Role; \
|
||||
http://vivoweb.org/ontology/core#AcademicDegree, core:Academic Degree; \
|
||||
http://purl.org/NET/c4dm/event.owl#Event, event:Event; \
|
||||
http://vivoweb.org/ontology/core#Location, core:Location; \
|
||||
http://xmlns.com/foaf/0.1/Organization, foaf:Organization; \
|
||||
http://xmlns.com/foaf/0.1/Person, foaf:Person; \
|
||||
http://purl.obolibrary.org/obo/IAO_0000030, obo:IAO_0000030
|
||||
45
home/src/main/resources/config/licenser/known_exceptions.txt
Normal file
45
home/src/main/resources/config/licenser/known_exceptions.txt
Normal file
|
|
@ -0,0 +1,45 @@
|
|||
#
|
||||
# A list of files and directories that are known exceptions to the
|
||||
# license-insertion process.
|
||||
#
|
||||
# Files will only be altered if they contain a "magic" license place-holder,
|
||||
# but if they match one of the file-matchers and don't contain a place-holder,
|
||||
# the process will write a warning.
|
||||
#
|
||||
# File-matchers are:
|
||||
# '*.java', '*.jsp', '*.tld', '*.xsl', '*.xslt', '*.css', '*.js', 'build.xml'
|
||||
#
|
||||
# Known exceptions listed here produce no warnings.
|
||||
#
|
||||
# Any files added to this list should include a comment, so we know where they
|
||||
# came from, or why they don't require a license statement.
|
||||
#
|
||||
|
||||
# See /doc/3rd-party-licenses.txt for LICENSE file
|
||||
themes/vivo-basic/css/blueprint/grid.css
|
||||
themes/vivo-basic/css/blueprint/ie.css
|
||||
|
||||
# PROBLEM: Can't find any info on licensing.
|
||||
themes/vivo-basic/css/blueprint/liquid.css
|
||||
|
||||
# See /doc/3rd-party-licenses.txt for LICENSE file
|
||||
themes/vivo-basic/templates/googleAnalytics.ftl
|
||||
|
||||
# See /doc/3rd-party-licenses.txt for LICENSE file
|
||||
utilities/load-testing/jmeter-results-report.xsl
|
||||
utilities/load-testing/jmeter-results-detail-report.xsl
|
||||
|
||||
# See /doc/3rd-party-licenses.txt for LICENSE file
|
||||
productMods/css/jquery_plugins/*
|
||||
productMods/js/jquery_plugins/*
|
||||
productMods/js/leaflet/*
|
||||
productMods/js/visualization/entitycomparison/jquery_plugins/*
|
||||
|
||||
# PROBLEM: Can't find any info on licensing.
|
||||
productMods/js/jquery_plugins/jquery.truncator.js
|
||||
|
||||
# Part of the OpenSocial integration - should this really be under the Apache license?
|
||||
themes/wilma/css/openSocial/gadgets.css
|
||||
|
||||
# JQuery for the Selenium test helper app.
|
||||
utilities/acceptance-tests/testApp/js/jquery.js
|
||||
34
home/src/main/resources/config/licenser/licenser.properties
Normal file
34
home/src/main/resources/config/licenser/licenser.properties
Normal file
|
|
@ -0,0 +1,34 @@
|
|||
# --------------------------------------------------------------------------
|
||||
# Properties for running the licenser utility in VIVO.
|
||||
# --------------------------------------------------------------------------
|
||||
|
||||
# The path to the top level directory to be scanned or copied
|
||||
# (if relative, then relative to this file)
|
||||
source_dir = ../../
|
||||
|
||||
# The path to the top level directory to copy into (ignored if only scanning)
|
||||
# (if relative, then relative to this file)
|
||||
target_dir =
|
||||
|
||||
# A list of filename globs that match the files we want to license,
|
||||
# delimited by commas with optional white-space.
|
||||
file_matchers = *.java, *.jsp, *.tld, *.xsl, *.xslt, *.css, *.js, *.ftl, *.xml
|
||||
|
||||
# "globs" that describe paths that we won't follow for scanning OR FOR COPYING.
|
||||
# (relative to the source_dir)
|
||||
skip_directories = ./bin, ./.svn, ./**/.svn, ./.build, ./vitro-core
|
||||
|
||||
# The path to a file containing filename/path globs that match the files that
|
||||
# we know should have no license tags in them.
|
||||
# The file contains one glob per line; blank lines and comments ("#") are ignored.
|
||||
# (if relative, then relative to the source directory)
|
||||
known_exceptions = config/licenser/known_exceptions.txt
|
||||
|
||||
# The path to the text of the license agreement (ignored if only scanning)
|
||||
# If the agreement contains a ${year} token, the current year will be substituted.
|
||||
# (if relative, then relative to the source directory)
|
||||
license_file = doc/license.txt
|
||||
|
||||
# Set to 'full' for a full report, 'short' for a brief statment, or to anything
|
||||
# else for a medium-length summary.
|
||||
report_level = short
|
||||
Loading…
Add table
Add a link
Reference in a new issue