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link project to outcomes and document project class.

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sjm222 2011-02-04 18:31:10 +00:00
parent fe3aa5d388
commit ff52e4d798
5 changed files with 2563 additions and 2507 deletions
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22
productMods/WEB-INF/filegraph/tbox/scires-1.2.owl
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@ -21,11 +21,6 @@
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Project"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A0">
<owl:allValuesFrom rdf:resource="http://purl.org/ontology/bibo/Document"/>
<owl:onProperty rdf:resource="http://vivoweb.org/ontology/scientific-research#hasDocumentation"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Restriction"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#studyPopulationCount">
<rdfs:domain rdf:resource="http://vivoweb.org/ontology/scientific-research#ClinicalTrial"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/>
@ -33,9 +28,9 @@
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Instrument">
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Equipment"/>
<rdfs:subClassOf rdf:nodeID="A0"/>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:descriptionAnnot>
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:shortDef>
<rdfs:subClassOf rdf:nodeID="A0"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Protocol">
@ -115,17 +110,17 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eagle-i: Research project that uses or collects measurements or assessments about humans.</vitro:descriptionAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#irbNumber">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/>
<rdfs:domain rdf:resource="http://vivoweb.org/ontology/scientific-research#ClinicalTrial"/>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Every clinical trial in the United States must be approved and monitored by an Institutional Review Board (IRB). An IRB is an independent committee of physicians, statisticians, community advocates and others whose objective is to ensure that a clinical trial is ethical and the rights of study participants are protected. </vitro:descriptionAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#BiologicalSpecimen">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A portion or quantity of a biological material for use in testing, examination, or study.</vitro:shortDef>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eagle-i: Material entity that is a portion or quantity of a biological material for use in testing, examination, or study. A biological specimen can be an individual animal, part of or derived an animal, plant, part of a plant, or microorganism. When a taxon is described, it is typically based on a single specimen and is referred to as the holotype.</vitro:descriptionAnnot>
<vitro:exampleAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An individual animal, part of or derived an animal, plant, part of a plant, or microorganism.</vitro:exampleAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#irbNumber">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/>
<rdfs:domain rdf:resource="http://vivoweb.org/ontology/scientific-research#ClinicalTrial"/>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Every clinical trial in the United States must be approved and monitored by an Institutional Review Board (IRB). An IRB is an independent committee of physicians, statisticians, community advocates and others whose objective is to ensure that a clinical trial is ethical and the rights of study participants are protected. </vitro:descriptionAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Phase3ClinicalTrial">
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In Phase 3 trials, an experimental study drug or treatment is given to large groups of people (1,000-3,000) to confirm its effectiveness, monitor side effects, compare it to commonly used treatments, and collect information that will allow the experimental drug or treatment to be used safely.
</vitro:descriptionAnnot>
@ -139,6 +134,11 @@ NOTE: For now we are not addressing whether this is a subclass of foaf:Agent</vi
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Material entity that is used in a chemical reaction or other experimental process to detect, measure, examine, or produce other substances.</vitro:shortDef>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A0">
<owl:allValuesFrom rdf:resource="http://purl.org/ontology/bibo/Document"/>
<owl:onProperty rdf:resource="http://vivoweb.org/ontology/scientific-research#hasDocumentation"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Restriction"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#ClinicalTrial">
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/scientific-research#HumanStudy"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>

2502
productMods/WEB-INF/filegraph/tbox/vivo-core-1.2.owl
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22
productMods/WEB-INF/ontologies/user/vivo-core-1.2-annotations.rdf
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@ -357,11 +357,11 @@
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGroupactivities"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.org/NET/c4dm/event.owl#product">
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#nobody"/>
<rdfs:label xml:lang="en-US">product</rdfs:label>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">5</vitro:displayLimitAnnot>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#nobody"/>
</rdf:Description>
<rdf:Description rdf:about="http://aims.fao.org/aos/geopolitical.owl#nameOfficialAR">
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#nobody"/>
@ -2736,6 +2736,17 @@
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#nobody"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#informationProduct">
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupbibliographic"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">produces</rdfs:label>
<vitro:collateBySubclassAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:collateBySubclassAnnot>
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Select a publication, patent or other type of information resource that has been produced as a result of this endeavor.</vitro:publicDescriptionAnnot>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">5</vitro:displayLimitAnnot>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">40</vitro:displayRankAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#teachingOverview">
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">1</vitro:displayLimitAnnot>
@ -2977,6 +2988,11 @@
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<rdfs:label xml:lang="en-US">current member of</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#informationProductOf">
<rdfs:label xml:lang="en-US">product of</rdfs:label>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">5</vitro:displayLimitAnnot>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">40</vitro:displayRankAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/core#Campus">
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>

22
productMods/WEB-INF/submodels/scires-1.2.owl
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@ -21,11 +21,6 @@
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Project"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A0">
<owl:allValuesFrom rdf:resource="http://purl.org/ontology/bibo/Document"/>
<owl:onProperty rdf:resource="http://vivoweb.org/ontology/scientific-research#hasDocumentation"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Restriction"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#studyPopulationCount">
<rdfs:domain rdf:resource="http://vivoweb.org/ontology/scientific-research#ClinicalTrial"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/>
@ -33,9 +28,9 @@
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Instrument">
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#Equipment"/>
<rdfs:subClassOf rdf:nodeID="A0"/>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:descriptionAnnot>
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An implement used to facilitate work, especially precision work.</vitro:shortDef>
<rdfs:subClassOf rdf:nodeID="A0"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Protocol">
@ -115,17 +110,17 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eagle-i: Research project that uses or collects measurements or assessments about humans.</vitro:descriptionAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#irbNumber">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/>
<rdfs:domain rdf:resource="http://vivoweb.org/ontology/scientific-research#ClinicalTrial"/>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Every clinical trial in the United States must be approved and monitored by an Institutional Review Board (IRB). An IRB is an independent committee of physicians, statisticians, community advocates and others whose objective is to ensure that a clinical trial is ethical and the rights of study participants are protected. </vitro:descriptionAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#BiologicalSpecimen">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A portion or quantity of a biological material for use in testing, examination, or study.</vitro:shortDef>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eagle-i: Material entity that is a portion or quantity of a biological material for use in testing, examination, or study. A biological specimen can be an individual animal, part of or derived an animal, plant, part of a plant, or microorganism. When a taxon is described, it is typically based on a single specimen and is referred to as the holotype.</vitro:descriptionAnnot>
<vitro:exampleAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An individual animal, part of or derived an animal, plant, part of a plant, or microorganism.</vitro:exampleAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#irbNumber">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/>
<rdfs:domain rdf:resource="http://vivoweb.org/ontology/scientific-research#ClinicalTrial"/>
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Every clinical trial in the United States must be approved and monitored by an Institutional Review Board (IRB). An IRB is an independent committee of physicians, statisticians, community advocates and others whose objective is to ensure that a clinical trial is ethical and the rights of study participants are protected. </vitro:descriptionAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#Phase3ClinicalTrial">
<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">In Phase 3 trials, an experimental study drug or treatment is given to large groups of people (1,000-3,000) to confirm its effectiveness, monitor side effects, compare it to commonly used treatments, and collect information that will allow the experimental drug or treatment to be used safely.
</vitro:descriptionAnnot>
@ -139,6 +134,11 @@ NOTE: For now we are not addressing whether this is a subclass of foaf:Agent</vi
<vitro:shortDef rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Material entity that is used in a chemical reaction or other experimental process to detect, measure, examine, or produce other substances.</vitro:shortDef>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A0">
<owl:allValuesFrom rdf:resource="http://purl.org/ontology/bibo/Document"/>
<owl:onProperty rdf:resource="http://vivoweb.org/ontology/scientific-research#hasDocumentation"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Restriction"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research#ClinicalTrial">
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/scientific-research#HumanStudy"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"/>

2502
productMods/WEB-INF/submodels/vivo-core-1.2.owl
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