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45 commits

Author SHA1 Message Date
Andrew Woods
17dd020835 Non-functional change to comment in example.applicationSetup.n3 
Related to: https://jira.lyrasis.org/browse/VIVO-1741
 2020-09-30 17:56:58 -04:00
diatomsRcool
f585d90c0e
adding collections process terms (#165) 
* adding collections process terms

No JIRA :(
 2020-09-23 11:03:25 -04:00
Mike Conlon
94c06ebec0
Add CollectionProcess and CurationProcess (#141) 
* Add CollectionProcess and CurationProcess

Resolves: 
- https://jira.lyrasis.org/browse/VIVO-1699 and
- https://jira.lyrasis.org/browse/VIVO-1700
 2020-03-17 19:54:26 -04:00
Andrew Woods
9b97bcd98c code review 2020-02-24 18:41:36 -05:00
Andrew Woods
56d2ee130f Update example default triple store from SDB to TDB 
Resolves: https://jira.lyrasis.org/browse/VIVO-1741
 2020-02-24 17:05:40 -05:00
Graham Triggs
d3b377b3a7 [VIVO-1670] ORCID - Disable Step 2 and Internationalization (#130) 
* Internationalize ORCiD add an iD
* ORCID Internationalization, allow Step 2 to be disabled if only a public API key

Resolves: https://jira.duraspace.org/browse/VIVO-1670
 2019-08-09 09:29:00 -04:00
Don Elsborg
06d266ea94 Vivo 1287 (#137) 
Remove five subclass axioms from five classes that had been subclass of skos:Concept; add subClassOf(DateTimeValuePrecision, Quality)

Resolves VIVO-1287
https://jira.duraspace.org/browse/VIVO-1287
 2019-08-09 15:14:31 +03:00
Graham Triggs
f597b7ee42 [VIVO-1415] Add publication claiming from PubMed and CrossRef (#129) 
* Claiming interface for DOI and PMID
* Allow http://doi.org urls in the claim process
* Make button i18n compliant
* Check Editor already claimed, error for no citation, PUMCIDs fixed
* Fixed gnarly DOI containing semi-colon (removed semi-colon as separator), match more DOI formats internally, improve AUTH restrictions
* Add Wilma themes
* Add permissions to allow proxy editors
* Update DOI resolver URI for content negotiation
* CSS changes to prevent layout problems in admin pages
* Add selectable list of publication types on import

Resolves to https://jira.duraspace.org/browse/VIVO-1415
 2019-08-08 10:15:17 -04:00
Ralph O'Flinn
0a08c2890d VIVO-1614 - Update to allow the TPF API to be toggled via the runtime.properties. (#136) 
* Update to allow the TPF API to be toggled via the runtime.properties.

Resolves: https://jira.duraspace.org/browse/VIVO-1614
 2019-08-02 13:20:31 -04:00
Ben
87092cec9c [VIVO-1690] - Remove trailing whitespace throughout project (#126) 
* Remove trailing whitespace throughout project

Resolves: https://jira.duraspace.org/browse/VIVO-1690
** Along with: https://github.com/vivo-project/Vitro/pull/117
 2019-05-03 12:51:00 -04:00
Ben
ba2ee238ad [VIVO-1671] Restrict context node labels added to search index to relationships (#117) 
Resolves: https://jira.duraspace.org/browse/VIVO-1671

* Restrict context node labels added to search index to relationships
 2019-01-25 09:45:27 -05:00
Stefan-Wolff
7a963c2ef9 [VIVO-1528] annotate fields for HTML editing (#100) 
* annotate fields for HTML editing

Resolves: https://jira.duraspace.org/browse/VIVO-1528
 2018-12-07 09:15:25 -05:00
Laura Wrubel
9580863285 [VIVO-1340] Fix links to documentation in runtime.properties (#98) 
Resolves: https://jira.duraspace.org/browse/VIVO-1340
 2018-12-05 14:54:09 -05:00
Mike Conlon
1ffdf3e11c has collaborator is symmetric (#90) 
* has collaborator is reflexive

* has collaborator is symmetric
 2018-10-10 12:44:13 +03:00
Michael Conlon
31921e7de5 Use URI for ontology references, not prefixes 2018-09-28 13:35:35 -04:00
Michael Conlon
c855033000 Correct 10 broken prefixes 2018-09-28 13:35:35 -04:00
Michael Conlon
e06d5cc721 Remove 28 IAO_0000412 assertions from vivo classes 2018-08-02 10:10:28 -04:00
Asimq
d5934d2e40 Added the argon2 parameters to example.runtime.properties [secure password hashing] (#70) 
* added argon2i parameters to example.runtime.properties
* fixed the style of the example.runtime.properties

Resolves: https://jira.duraspace.org/browse/VIVO-1448
 2018-05-23 13:45:57 -04:00
Mike Conlon
8c02817465 Adding rdfs:domains back for the 10 cases left from DataDomain.rdf file (#69) 
* Add domain foaf:Agent to vivo:overview
* Adding rdfs:domains back for the 10 cases left from DataDomain.rdf file.
 2018-05-23 08:42:57 -06:00
Javed
3890131205
Merge pull request #63 from vivo-project/vivo-1447 
Replace ontology files with vivo.owl
 2018-04-26 12:23:31 -04:00
Michael Conlon
da68b7a628 List all ontologies with label and prefix 2018-04-25 11:52:36 -04:00
hudajkhan
73c205ddf2
Merge pull request #59 from j2blake/feature/1408-java-rdf-namespaces 
VIVO-1408 java rdf namespaces
 2018-04-03 15:42:33 -04:00
Michael Conlon
25b60e824f Replace ontology files with vivo.owl 2018-03-11 14:25:01 -04:00
gneissone
7fe329b329 Add clarification to ORCID integration settings 2018-02-07 19:32:56 -07:00
Jim Blake
71dfb30530 VIVO-1408 Use prefix to simplify JAVA class URIs 2018-01-10 10:06:59 -05:00
gneissone
b3683f6178 Update Map of Science and ResearcherID descriptions 2017-11-15 09:03:53 -07:00
Graham Triggs
18e110e73e Update ORCID example config to API 2.0 2017-10-18 15:39:33 +01:00
Graham Triggs
43dea89dae Minor code improvements 2017-09-18 11:50:07 +01:00
Graham Triggs
ca6d629e2f [VIVO-1346] Updates to ORCiD client library integration (preparation for v2.0) 2017-07-27 17:33:43 +01:00
Graham Triggs
77fcd3c538 [VIVO-1260] Make cache headers the default 2017-07-14 19:24:46 +01:00
Steve McKay
bc5b119c12 [VIVO-1315] Plum print integration (#52) 2017-04-30 13:15:07 +01:00
Nate Prewitt
34afa4e43b
updating license path 2017-04-21 17:12:47 -06:00
Graham Triggs
5be5260ae7 Update ARQ urls for Jena 3 2016-12-15 10:10:17 +00:00
Mike Conlon
7ee9cd3d7d Remove rdfs:Literal from abbrev B.Sc. and M.P.H 
B.Sc. and M.P.H.  were the only two abbreviations to be declared as datatype rdfs:Literal.  These declarations have been removed.  Now all abbreviations are in the same form: <core:abbreviation>value</core:abbreviation>
 2016-10-27 17:39:46 -04:00
Mike Conlon
0dbce03ace Fix typo 2016-10-27 16:50:07 -04:00
grahamtriggs
906a905275 Fix typo 2016-08-11 15:07:10 +01:00
Graham Triggs
f43db39084 Add key for Google Maps (Map of Science) 2016-07-28 22:10:17 +01:00
Chad Nelson
cb0d12e0e3 Fix typo (#39) 2016-07-07 08:24:14 +01:00
Graham Triggs
7a2d415cfa [VIVO-1121] Remove Flash visualisations 2016-06-20 18:54:35 +01:00
grahamtriggs
ee7b974ac5 [VIVO-1249] Add capability maps for research areas (#35) 
* Initial capability map implementation

* Add autocomplete

* Make headers update the info panel

* Ajax retrieval of person details - reduce memory requirements and startup time

* Remove old referer info

* Handle missing labels.

* Fix refresh button; add menu entry for new installations
 2016-06-20 17:01:51 +01:00
Graham Triggs
4dfffe88a2 [VIVO-1236] Add TwelveMonkeys ImageIO library for full OpenJDK image support 2016-05-02 14:13:07 +01:00
Benjamin Gross
3ffbea3cbb Fix broken URLs in runtime.properties, use tiny links 2016-03-21 10:26:56 -06:00
Michael Conlon
6e58127563 improve tagline. Improve file formatting 2016-03-05 17:33:44 -05:00
Graham Triggs
e8613dc5ae Move unnecessary files out of home directory 2015-11-25 13:58:13 +00:00
Graham Triggs
fee48b0b50 Maven migration (first draft) 2015-11-19 23:47:41 +00:00