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71 commits

Author SHA1 Message Date
j2blake
c084a05832 VIVO-692 Restrict LOD by Publish level, not by Display level 
Create a new annotation for properties and classes, HiddenFromPublishBelowRoleLevelAnnot.
Provide the means to initialize these annotations, edit them, and display them in the verbose property display.
Create a Permission and some requested actions so the policies can decide which statements must be filtered out, based on the user's role.
Add unit tests and improve acceptance tests
 2014-03-10 18:00:18 -04:00
Jon Corson-Rikert
80f53240a7 added restriction on “related technique” so that the property will appear for Material Entities (equipment and instruments). Made related technique visible and editable in property group overview. Put Technique into a class group (‘research’). Put SubnationalRegion into the class group “locations”. Put vivo:database in class group ‘research’ (not ero:Database). 2013-12-12 07:32:52 -05:00
tworrall
ba63872b8f VIVO-637 2013-12-10 15:47:21 -05:00
tworrall
dce8cc39af VIVO-592 2013-12-10 14:16:17 -05:00
tworrall
220194dc73 VIVO-637 date time generator changes for various date time properties 2013-12-10 12:42:45 -05:00
Jon Corson-Rikert
62ac5106da changed label from broader term to broader concept 2013-12-10 09:55:28 -05:00
Jon Corson-Rikert
c8d6132eb4 minor tweaks plus adding date/time value custom form annotations to date filed, date issued, globalcountdate, date expires that don’t q quite work yet 2013-12-10 08:08:38 -05:00
Jon Corson-Rikert
d85fff74d9 Merge branch 'maint-rel-1.6' of github.com:vivo-project/VIVO into maint-rel-1.6 2013-12-09 18:46:30 -05:00
Jon Corson-Rikert
1b934b6176 Further tweaks to display, domain and range settings for properties that had been missing inverse property statements. Setting skos:related to be an owl:SymmetricProperty 2013-12-09 18:46:18 -05:00
tworrall
f8fe9f870a VIVO-629 added GlobalCitationCount to publications class group 2013-12-09 13:13:31 -05:00
Jon Corson-Rikert
46db6f6933 Added Software to the class group publications (“research”); corrected class group name on Protocol; relabeled “documentation for service” to “documentation for project or resource” 2013-12-06 16:56:40 -05:00
Jon Corson-Rikert
ea93eea861 Merge branch 'maint-rel-1.6' of github.com:vivo-project/VIVO into maint-rel-1.6 
Conflicts:
	rdf/tbox/firsttime/initialTBoxAnnotations.n3
 2013-12-06 13:47:09 -05:00
Jon Corson-Rikert
f7863669e8 Minor changes to hide additional eagle-i properties that are deprecated or involve classes not currently in VIVO 2013-12-06 13:23:57 -05:00
brianjlowe
dba0fafea1 VIVO-624 removed 8 object properties whose domain or range classes aren't being included 2013-12-06 12:51:03 -05:00
brianjlowe
1ed07aa8c8 remove hasAccessionNumber, which only applies to reagents and the like 2013-12-05 16:20:22 -05:00
Jon Corson-Rikert
417179fd81 adding Organism to the class group publications (labeled research) to see if the derives from property works 2013-12-05 15:58:19 -05:00
Jon Corson-Rikert
9687b9cb85 Merge branch 'maint-rel-1.6' of github.com:vivo-project/VIVO into maint-rel-1.6 2013-12-05 10:41:42 -05:00
Jon Corson-Rikert
86a9c7804c Changes to annotations on eagle-i properties for biological specimen and instrument 2013-12-05 10:41:31 -05:00
brianjlowe
2251cc09bc adding obo:Organism class 2013-12-05 10:31:49 -05:00
brianjlowe
47d9ff55c8 VIVO-612 remove vivo:TransnationalRegion 2013-12-04 10:37:14 -05:00
Jon Corson-Rikert
2f9d2133a9 minor changes for wording (facility for vs. site for) and adding Protocol to the class group research; made ‘has specified input’ and ‘achieves planned objective’ nobody/nobody 2013-12-04 07:13:18 -05:00
tworrall
6a1fa38ea0 set the stubObjectProperty annotation to false for owl:sameAs 2013-12-03 15:56:26 -05:00
Jon Corson-Rikert
2932f48aec Tweaks to hide sameAs (nobody/nobody) and adjust facility-org location of/location property labels based on testing 2013-12-03 15:14:24 -05:00
tworrall
13c10e3adb correcting class group settings 2013-12-03 13:44:48 -05:00
Jon Corson-Rikert
f47733b3ff Working to clarify relations between Facility and Event, Facility and Geographic Location, and Geographic Locations and other individuals 2013-12-02 19:13:35 -05:00
Jon Corson-Rikert
bfabd2beea Merge branch 'maint-rel-1.6' of github.com:vivo-project/VIVO into maint-rel-1.6 2013-12-02 18:05:00 -05:00
Jon Corson-Rikert
13f6557866 Additional changes to property groups focusing on Project and Research Project 2013-12-02 18:04:48 -05:00
tworrall
19c95c1670 fixes for VIVO-591, VIVO-592, VIVO-594, VIVO-597, VIVO-598 and VIVO-601 2013-12-02 17:06:51 -05:00
Jon Corson-Rikert
188087c993 Further changes to property group and class group membership, primarily for Service and its subclasses but also to enable a create option for a hasPart relationship with geographic locations 2013-12-02 13:24:01 -05:00
Jon Corson-Rikert
8ec28b71de Continued minor changes in property placement and ordering 2013-11-26 17:18:39 -05:00
Jon Corson-Rikert
8bae848816 Additional changes related to VIVO-557 — duplication of property labels and/or statements where restrictions are in the file graph TBox 2013-11-25 16:51:49 -05:00
Jon Corson-Rikert
d779300c9d Merge branch 'maint-rel-1.6' of github.com:vivo-project/VIVO into maint-rel-1.6 2013-11-25 10:10:54 -05:00
Jon Corson-Rikert
2627d1e983 Changes to rearrange properties in the VIVO interface — both ordering and property group membership 
VIVO-555
 2013-11-25 10:09:11 -05:00
brianjlowe
5623eb82d4 VIVO-566 reverting back to vivo:Dataset 2013-11-22 11:34:54 -05:00
tworrall
4f48f9b1e2 need to display contributingRole 2013-11-22 09:20:55 -05:00
brianjlowe
f65abc9471 Merge branch 'maint-rel-1.6' of https://github.com/vivo-project/VIVO into maint-rel-1.6 2013-11-21 20:22:27 -05:00
brianjlowe
8d2e56177b VIVO-566 ontology prefixes VIVO-565 add new class vivo:Abstract and most of VIVO-566 replace vivo:Dataset with obo:Dataset and add cito properties 2013-11-21 20:22:21 -05:00
tworrall
5a115960b6 VIVO-554: hiding add, update, delete links on the activity side of roles 2013-11-21 10:06:46 -05:00
Jon Corson
6459a1837a Changed to modify user-facing labels 2013-11-20 15:59:15 -05:00
tworrall
d99490a95d VIVO-556: properties appearing twice 2013-11-20 14:51:14 -05:00
brianjlowe
bcf395732e VIVO-527 VIVO-526 VIVO-528 property visibility and annotations 2013-11-14 10:38:51 -05:00
brianjlowe
15c59932dd VIVO-435 changed domain/range of cites/citedBy and removed odd individuals that came in with the ISF 2013-11-14 09:52:11 -05:00
hudajkhan
bb28dfa340 Merge branch 'maint-rel-1.6' of https://github.com/vivo-project/VIVO into maint-rel-1.6 2013-11-11 18:45:22 -05:00
hudajkhan
2ba253afb7 skos relates should show just concepts and not subclasses for select existing or add new 2013-11-11 18:42:31 -05:00
brianjlowe
33c27794f5 VIVO-519 offerCreateNew for hasPredecessorOrganization 2013-11-11 16:02:25 -05:00
brianjlowe
77b408e699 VIVO-496 and VIVO-497 hiding inheres in and cleaning up has expertise 2013-11-06 09:11:03 -05:00
brianjlowe
ef3ac5008d VIVO-494 hiding "realizes" 2013-11-05 16:08:22 -05:00
brianjlowe
da690ebf9d VIVO-434 restoring "documentation for" 2013-11-05 15:25:27 -05:00
brianjlowe
d81ae17045 VIVO-493 hiding "has participant" / "participates in" 2013-11-05 13:24:46 -05:00
brianjlowe
8dbf9969c2 VIVO-408 hiding dateTimeValue property 2013-11-04 11:50:54 -05:00