Commit graph

78 commits

Author SHA1 Message Date
Ralph O'Flinn
abd40c25f5
updates to outdated URLs and branch names (#251) (#252)
updates to outdated URLs and branch names (typically master -> main)
2021-10-06 06:38:19 -05:00
Ralph O'Flinn
584b34c682 [maven-scm-plugin] prepare development vivo-1.12.1-SNAPSHOT-SNAPSHOT 2021-06-23 00:19:07 -05:00
Ralph O'Flinn
9b0de5f3d4 [maven-scm-plugin] prepare release vivo-1.12.0 2021-06-23 00:16:40 -05:00
Brian Lowe
109b5a4fe1
Update version numbers in pom.xmls (#244)
* Update version numbers in pom.xmls

* Restore -SNAPSHOT
2021-06-21 04:11:24 -05:00
Ben
5d257cae6b
[VIVO-1982] - Set default email params to blank (#238)
* Set default email params to blank

* Comment out email settings
2021-05-07 11:46:57 +03:00
Brian Lowe
8b161f948e
Add usePreciseSubqueries property to example.runtime.properties (#233) 2021-05-05 10:36:46 -06:00
Brian Lowe
fe1498319a
Add note to runtime.properties that TPF should not be used if VIVO contains restricted data. (#236) 2021-04-27 10:43:59 -06:00
Brian Lowe
f4d187a601
Allow 'create new' for vivo:governingAuthorityFor. Resolve https://jira.lyrasis.org/browse/VIVO-1820 (#234) 2021-04-21 12:38:32 -05:00
Brian Lowe
29728b3b40
Add additional URI finder that will reindex a person if its associate… (#227)
* Add additional URI finder that will reindex a person if its associated title or email resource is deleted altogether.

* Remove redundant identical query; eliminate unused prefix.
2021-04-21 11:54:23 -05:00
Brian Lowe
2fa7cce5c7
Move non-language-specific Vitro annotations to VIVO tbox firsttime d… (#225)
* Move non-language-specific Vitro annotations to VIVO tbox firsttime directory.

* Update tbox/firsttime readme to document difference between vitroAnnotations.n3 and initialTBoxAnnotations.n3
2021-03-30 15:05:11 -05:00
Ralph O'Flinn
d00d7de585
Revert deployment strategy (#230)
* revert deployment changes

* update docker and compose for previous deployment

* minor readme update

* use package instead of install

this avoids exploding war file in tomcat but seems to be missing overlays for VIVO theme

* test docker workflow

* test deploy workflow

* add package profile for home

* skip deploy for installer

* skip installer by profile

* update workflows

* minor readme update

* use app-name for vivo log file name

* Update log4j.properties

Co-authored-by: William Welling <wwelling@library.tamu.edu>
2021-03-24 01:46:24 -05:00
Andrew Woods
5f6cabc42a
Update example.runtime.properties (#222)
* Update example.runtime.properties

Resolves: https://jira.lyrasis.org/browse/VIVO-1930

Co-authored-by: gneissone <mbgross@wustl.edu>
Co-authored-by: Andrew Woods <awoods@duraspace.org>
2021-02-12 16:42:58 +02:00
gneissone
f15eec19e0 Bugfix for type restriction in search index config 2021-02-11 09:00:22 -05:00
Andrew Woods
268ffa1cd7
Sprint i18n with main (#215)
* Layer uqam updates onto master (minus trailing whitespace)

* Update AddOrganizerRoleToPersonGenerator.java

Removed extraneous whitespace

* My whitespace (#153)

* Update AddPublicationToPersonGenerator.java

* Removed extraneous whitespace AND move RootUserPolicy.java from VIVO to Vitro

* Fixed whitespace in: AddAttendeeRoleToPersonGenerator.java

* Fixed indentations for AddOutreachProviderRoleToPersonGenerator.java

* Fixed indentations

* Removed extraneous whitespace (#158)

* Removed extraneous whitespace

* Fix bug introduced in cleaning up whitespace

* Tagging UQAM comments with the following tags

-Add-Feature
-Optimization
-Linguistic-Management
-Bug-Correction

* Update AddReviewerRoleToPersonGenerator.java

* Added an internationalization correction to be considered in the vivo-i18n-core that was forgotten when sprint-i18n was created.

* Fix typo in AddReviewerRoleToPersonGenerator

Resolves: https://jira.lyrasis.org/browse/VIVO-1774

* Fix typo in AddOutreachProviderRoleToPersonGenerator

Resolves: https://jira.lyrasis.org/browse/VIVO-1775

* Include language dependencies in build all of the time (#168)

Move "LocaleSelectionSetup" higher in the startup list so that the Vitro:RDFFilesLoader has the locale info available on its startup

Part of resolution to: https://jira.lyrasis.org/browse/VIVO-1836

Co-authored-by: Andrew Woods <awoods@duraspace.org>

* Made modifications to publicationToPersonUtils.js so that multilangua… (#170)

* Made modifications to publicationToPersonUtils.js so that multilanguage support will not break the javascript functionalty.

Co-authored-by: root <root@vivo-development.hs-mittweida.de>

Resolves: https://jira.lyrasis.org/browse/VIVO-1739

* Feature language en_CA (#169)

* Changing ontology extensions for n3 & assigning a base IRI to each
ontology

Co-authored-by: michelheonuqam <heon.michel@uqam.ca>
Co-authored-by: michelheon <heon@videotorn.ca>

Partial resolution of: https://jira.lyrasis.org/browse/VIVO-1862

* i18n: title tag and headings in capability map are in english in french version (#173)

* added multi-language support for ticket VIVO-1846

* fixed swapped properties, added Capability map title to i18n

Partial resolution to: https://jira.lyrasis.org/browse/VIVO-1847

* Added i18n support for Capability Map control buttons, JIRA ticket VIVO-1846

* removed redundat files which are now available via Vitro- and VIVO-languages

* added i18n support for the capability map, ticket vivo-1892

* Revert non-function RDF changes (#180)

Related to: https://jira.lyrasis.org/browse/VIVO-1905

Co-authored-by: Andrew Woods <awoods@duraspace.org>

* Ensure 'other' in Individual->Teaching->advisees->type is translated

Partial resolution to: https://jira.lyrasis.org/browse/VIVO-1881

* [VIVO-1842] i18n: Added function js_string at i18n variables to handle quotes properly (#181)

* added js_string at i18n strings to handle quotes properly, ticket vivo-1842

Partial resolution for: https://jira.lyrasis.org/browse/VIVO-1842

* replace static headings with i18n values (#183)

Partial resolution of: https://jira.lyrasis.org/browse/VIVO-1844

* added empty check for getCountry, fixing bug with spanish label (es), ticket vivo-1900 (#182)

Partial resolution to: https://jira.lyrasis.org/browse/VIVO-1900

* Issue/vivo 1908 (#185)

* Provide fallback language in language-filtered webpage SPARQL query and use existing RDFService-based filtering for ConstantFieldOptions

Resolves: https://jira.lyrasis.org/browse/VIVO-1906

* Fix bug of missing toString() (#187)

Related to: https://jira.lyrasis.org/browse/VIVO-1906

Co-authored-by: Andrew Woods <awoods@duraspace.org>

* Remove files replicated in i18n (#186)

Related to: https://jira.lyrasis.org/browse/VIVO-1917

* removed redundant vitroAnnotations, now in VIVO-languages, ticket vivo-1821

* Removed key.png from the template and replaced it with css sprite and… (#184)

* Removed key.png from the template and replaced it with css sprite and descriptions in plain text.
* * adding height to background images, hopefully fixing issues

Partial resolution for: https://jira.lyrasis.org/browse/VIVO-1902

* [VIVO-1915] i18n - removing language select for label management for individuals (#190)

* removed the language select for managing multi language labels fpr individuals, ticket vivo-1915

* modified ManageLabelsForPersonGenerator so that you can only add an langauge label if it is not already set, ticket vivo-1915

Partial resolution to: https://jira.lyrasis.org/browse/VIVO-1915

* - added i18n() to hardcoded values

* added i18n support to person's domain in capability map, ticket 1867

* [VIVO-1946] - Update ResearcherID description in vivo.owl (#188)

* Update ResearcherID description in vivo.owl

Partial resolution to: https://jira.lyrasis.org/browse/VIVO-1946

* [VIVO-1936] i18n: updated the language comment in runtime.properties (#203)

Partial resolution of: https://jira.lyrasis.org/browse/VIVO-1936

Co-authored-by: Kampe <Benjamin.Kampe@tib.eu>

* [VIVO-1924] i18n: @en i18n properties are not loaded during first site startup. (#204)

* rearranged startup-listeners fixing bug with language files, ticket VIVO-1924

* Added a comment to prevent future bugs like this, ticket VIVO-1924

* fixed previous comment, ticket VIVO-1924

* Remove duplicate text from dropdown menus

* Minor checkstyle correction following: VIVO-1936 (#206)

Follow-on to: https://jira.lyrasis.org/browse/VIVO-1936

Co-authored-by: Andrew Woods <awoods@duraspace.org>

* follow-up on vivo-1936 - restore default values in example-settings.xml (#210)

Co-authored-by: gneissone <mbgross@wustl.edu>

* [VIVO-1798] - Internationalize first and last name validation (#207)

* Internationalize first and last name validation

Partial resolution to: https://jira.lyrasis.org/browse/VIVO-1798

* adding collections process terms (#165)

* adding collections process terms

No JIRA :(

* Non-functional change to comment in example.applicationSetup.n3

Related to: https://jira.lyrasis.org/browse/VIVO-1741

* Update orcidConfirm.ftl (#199)

Fix i18n property used on ORCID confirmation step 2 button.
Related to https://jira.lyrasis.org/browse/VIVO-1945

* Fix external AGROVOC service URL

* URL fix for LCSH service

* Remove unnecessary pom.xml 'profile'

- Also, uncomment language overlays
   - Noting that this is not actually necessary, as any 'war' Maven dependencies are automatically overlayed:
   - https://maven.apache.org/plugins/maven-war-plugin/overlays.html

Co-authored-by: Andrew Woods <awoods@duraspace.org>
Co-authored-by: Nicolas D <46490666+nicalico@users.noreply.github.com>
Co-authored-by: UQAM-VIVO <heon.michel@uqam.ca>
Co-authored-by: matthiasluehr <60263380+matthiasluehr@users.noreply.github.com>
Co-authored-by: Michel Heon <heon@videotron.ca>
Co-authored-by: dofeldsc <dofeldsc@uos.de>
Co-authored-by: William Welling <wwelling@library.tamu.edu>
Co-authored-by: Brian Lowe <brianjlowe@gmail.com>
Co-authored-by: Matthias Lühr <luehr@hs-mittweida.de>
Co-authored-by: Ben <mbgross@wustl.edu>
Co-authored-by: Benjamin Kampe <benjamin@fehrmanns.net>
Co-authored-by: Kampe <Benjamin.Kampe@tib.eu>
Co-authored-by: Gross, Benjamin <benjamin.gross@clarivate.com>
Co-authored-by: diatomsRcool <annethessen@gmail.com>
Co-authored-by: L.O <53535673+lb-ov@users.noreply.github.com>
2021-02-10 11:02:20 -06:00
Andrew Woods
01776ee692
Enable war deployment model (#197)
* Add 'home' files into build war artifact

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Disable copying exploded war to Tomcat dir

- hardcode vivo.all.log file name
- must now set system property: -Dvivo-dir=/opt/vivo/home/

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Ensure build does not remove and re-add VIVO_HOME/rdf

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Remove unnecessary profile from installer/pom.xml

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Rename example config files to have 'default' prefix

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Require common properties to be in JNDI

Properties include:
- vitro/home
- vitro/appName
- vitro/rootUserAddress
- vitro/defaultNamespace

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* VIVO-1443: app name (#2)

* Non-functional change to comment in example.applicationSetup.n3

Related to: https://jira.lyrasis.org/browse/VIVO-1741

* Update orcidConfirm.ftl (#199)

* remove example-settings.xml
* simplify war name and afford override during build
* default app name to vivo and pass into context.xml

Co-authored-by: Andrew Woods <awoods@duraspace.org>
Co-authored-by: L.O <53535673+lb-ov@users.noreply.github.com>

Co-authored-by: Andrew Woods <awoods@duraspace.org>
Co-authored-by: William Welling <wwelling@library.tamu.edu>
Co-authored-by: L.O <53535673+lb-ov@users.noreply.github.com>
2021-02-05 10:56:50 -06:00
Andrew Woods
17dd020835 Non-functional change to comment in example.applicationSetup.n3
Related to: https://jira.lyrasis.org/browse/VIVO-1741
2020-09-30 17:56:58 -04:00
diatomsRcool
f585d90c0e
adding collections process terms (#165)
* adding collections process terms

No JIRA :(
2020-09-23 11:03:25 -04:00
Mike Conlon
94c06ebec0
Add CollectionProcess and CurationProcess (#141)
* Add CollectionProcess and CurationProcess

Resolves: 
- https://jira.lyrasis.org/browse/VIVO-1699 and
- https://jira.lyrasis.org/browse/VIVO-1700
2020-03-17 19:54:26 -04:00
Ralph O'Flinn
96e9f507c5 [maven-scm-plugin] prepare development vivo-1.11.2-SNAPSHOT 2020-03-07 10:46:41 -06:00
Ralph O'Flinn
cad6a66f39 [maven-scm-plugin] prepare release vivo-1.11.1 2020-03-07 10:45:36 -06:00
Andrew Woods
9b97bcd98c code review 2020-02-24 18:41:36 -05:00
Andrew Woods
56d2ee130f Update example default triple store from SDB to TDB
Resolves: https://jira.lyrasis.org/browse/VIVO-1741
2020-02-24 17:05:40 -05:00
Ralph O'Flinn
4b18675112 [maven-scm-plugin] prepare development vivo-1.11.1-SNAPSHOT 2019-10-21 04:38:26 -05:00
Ralph O'Flinn
f0d3a70fba [maven-scm-plugin] prepare release vivo-1.11.0 2019-10-21 04:35:52 -05:00
Graham Triggs
d3b377b3a7 [VIVO-1670] ORCID - Disable Step 2 and Internationalization (#130)
* Internationalize ORCiD add an iD
* ORCID Internationalization, allow Step 2 to be disabled if only a public API key

Resolves: https://jira.duraspace.org/browse/VIVO-1670
2019-08-09 09:29:00 -04:00
Don Elsborg
06d266ea94 Vivo 1287 (#137)
Remove five subclass axioms from five classes that had been subclass of skos:Concept; add subClassOf(DateTimeValuePrecision, Quality)

Resolves VIVO-1287
https://jira.duraspace.org/browse/VIVO-1287
2019-08-09 15:14:31 +03:00
Graham Triggs
f597b7ee42 [VIVO-1415] Add publication claiming from PubMed and CrossRef (#129)
* Claiming interface for DOI and PMID
* Allow http://doi.org urls in the claim process
* Make button i18n compliant
* Check Editor already claimed, error for no citation, PUMCIDs fixed
* Fixed gnarly DOI containing semi-colon (removed semi-colon as separator), match more DOI formats internally, improve AUTH restrictions
* Add Wilma themes
* Add permissions to allow proxy editors
* Update DOI resolver URI for content negotiation
* CSS changes to prevent layout problems in admin pages
* Add selectable list of publication types on import

Resolves to https://jira.duraspace.org/browse/VIVO-1415
2019-08-08 10:15:17 -04:00
Ralph O'Flinn
0a08c2890d VIVO-1614 - Update to allow the TPF API to be toggled via the runtime.properties. (#136)
* Update to allow the TPF API to be toggled via the runtime.properties.

Resolves: https://jira.duraspace.org/browse/VIVO-1614
2019-08-02 13:20:31 -04:00
Ben
87092cec9c [VIVO-1690] - Remove trailing whitespace throughout project (#126)
* Remove trailing whitespace throughout project

Resolves: https://jira.duraspace.org/browse/VIVO-1690
** Along with: https://github.com/vivo-project/Vitro/pull/117
2019-05-03 12:51:00 -04:00
Ben
ba2ee238ad [VIVO-1671] Restrict context node labels added to search index to relationships (#117)
Resolves: https://jira.duraspace.org/browse/VIVO-1671

* Restrict context node labels added to search index to relationships
2019-01-25 09:45:27 -05:00
Stefan-Wolff
7a963c2ef9 [VIVO-1528] annotate fields for HTML editing (#100)
* annotate fields for HTML editing

Resolves: https://jira.duraspace.org/browse/VIVO-1528
2018-12-07 09:15:25 -05:00
Laura Wrubel
9580863285 [VIVO-1340] Fix links to documentation in runtime.properties (#98)
Resolves: https://jira.duraspace.org/browse/VIVO-1340
2018-12-05 14:54:09 -05:00
Mike Conlon
1ffdf3e11c has collaborator is symmetric (#90)
* has collaborator is reflexive

* has collaborator is symmetric
2018-10-10 12:44:13 +03:00
Michael Conlon
31921e7de5 Use URI for ontology references, not prefixes 2018-09-28 13:35:35 -04:00
Michael Conlon
c855033000 Correct 10 broken prefixes 2018-09-28 13:35:35 -04:00
Michael Conlon
e06d5cc721 Remove 28 IAO_0000412 assertions from vivo classes 2018-08-02 10:10:28 -04:00
vivo-uab
0547725a48 [maven-scm-plugin] prepare development vivo-1.11.0-SNAPSHOT 2018-07-09 20:18:40 -04:00
vivo-uab
df0b4697a4 [maven-scm-plugin] prepare release vivo-1.10.0 2018-07-09 20:18:40 -04:00
Asimq
d5934d2e40 Added the argon2 parameters to example.runtime.properties [secure password hashing] (#70)
* added argon2i parameters to example.runtime.properties
* fixed the style of the example.runtime.properties

Resolves: https://jira.duraspace.org/browse/VIVO-1448
2018-05-23 13:45:57 -04:00
Mike Conlon
8c02817465 Adding rdfs:domains back for the 10 cases left from DataDomain.rdf file (#69)
* Add domain foaf:Agent to vivo:overview
* Adding rdfs:domains back for the 10 cases left from DataDomain.rdf file.
2018-05-23 08:42:57 -06:00
Graham Triggs
5ca0d3daff [VIVO-1470] Cross-platform improvements for Maven (#64) 2018-05-02 12:51:09 +03:00
Mike Conlon
e3c74c0cbb
Merge pull request #65 from awoods/vivo-1479
Change project version from 2.0.0-SNAPSHOT to 1.10.0-SNAPSHOT
2018-04-27 10:38:50 -04:00
Javed
3890131205
Merge pull request #63 from vivo-project/vivo-1447
Replace ontology files with vivo.owl
2018-04-26 12:23:31 -04:00
Michael Conlon
da68b7a628 List all ontologies with label and prefix 2018-04-25 11:52:36 -04:00
Andrew Woods
5991c8411d Change project version from 2.0.0-SNAPSHOT to 1.10.0-SNAPSHOT
Resolves: https://jira.duraspace.org/browse/VIVO-1479
2018-04-24 17:09:56 -04:00
hudajkhan
73c205ddf2
Merge pull request #59 from j2blake/feature/1408-java-rdf-namespaces
VIVO-1408 java rdf namespaces
2018-04-03 15:42:33 -04:00
Michael Conlon
25b60e824f Replace ontology files with vivo.owl 2018-03-11 14:25:01 -04:00
gneissone
7fe329b329 Add clarification to ORCID integration settings 2018-02-07 19:32:56 -07:00
Jim Blake
71dfb30530 VIVO-1408 Use prefix to simplify JAVA class URIs 2018-01-10 10:06:59 -05:00
gneissone
b3683f6178 Update Map of Science and ResearcherID descriptions 2017-11-15 09:03:53 -07:00