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119 commits

Author SHA1 Message Date
Patrick McElwee
212626f0bb Remove vitroPublic.owl 
This file exists canonically in the Vitro project, and we don't want this version to
overwrite it.
 2014-10-30 10:21:00 -04:00
Tim Worrall
b182c70987 a fix to the VIVO-833 fix.... 2014-07-23 12:54:33 -04:00
Tim Worrall
eef68326cc VIVO-833 2014-07-18 12:55:14 -04:00
j2blake
38658bdcd9 VIVO-738 When ORCID ID is removed, it is deleted also. 2014-06-13 16:01:51 -04:00
Tim Worrall
4e5071758e set display levels on position subtypes so that th eprimary position can be filtered out of list view 2014-06-12 10:34:37 -04:00
brianjlowe
0c21855fc5 tweak to initial tbox annotations 2014-06-11 15:14:39 -04:00
brianjlowe
a607b240a5 VIVO-786 and VIVO-751 changes to default property annotations and 1.7 migration 2014-06-11 14:19:00 -04:00
j2blake
939950dcd4 VIVO-769 Merge branch 'feature/orcid' into develop 2014-05-07 17:32:38 -04:00
brianjlowe
b3d8aecbc0 VIVO-33 changes vivo:dateTime and c40:hasGlobalCitationDate back to DatatypeProperties 2014-04-04 12:28:56 -04:00
j2blake
713b6317d1 VIVO-706 add a ObjectProperty declaration for "conceptAssociatedWith" 2014-03-12 13:16:38 -04:00
j2blake
c084a05832 VIVO-692 Restrict LOD by Publish level, not by Display level 
Create a new annotation for properties and classes, HiddenFromPublishBelowRoleLevelAnnot.
Provide the means to initialize these annotations, edit them, and display them in the verbose property display.
Create a Permission and some requested actions so the policies can decide which statements must be filtered out, based on the user's role.
Add unit tests and improve acceptance tests
 2014-03-10 18:00:18 -04:00
Jon Corson-Rikert
80f53240a7 added restriction on “related technique” so that the property will appear for Material Entities (equipment and instruments). Made related technique visible and editable in property group overview. Put Technique into a class group (‘research’). Put SubnationalRegion into the class group “locations”. Put vivo:database in class group ‘research’ (not ero:Database). 2013-12-12 07:32:52 -05:00
tworrall
ba63872b8f VIVO-637 2013-12-10 15:47:21 -05:00
tworrall
dce8cc39af VIVO-592 2013-12-10 14:16:17 -05:00
tworrall
220194dc73 VIVO-637 date time generator changes for various date time properties 2013-12-10 12:42:45 -05:00
Jon Corson-Rikert
62ac5106da changed label from broader term to broader concept 2013-12-10 09:55:28 -05:00
Jon Corson-Rikert
c8d6132eb4 minor tweaks plus adding date/time value custom form annotations to date filed, date issued, globalcountdate, date expires that don’t q quite work yet 2013-12-10 08:08:38 -05:00
Jon Corson-Rikert
d85fff74d9 Merge branch 'maint-rel-1.6' of github.com:vivo-project/VIVO into maint-rel-1.6 2013-12-09 18:46:30 -05:00
Jon Corson-Rikert
1b934b6176 Further tweaks to display, domain and range settings for properties that had been missing inverse property statements. Setting skos:related to be an owl:SymmetricProperty 2013-12-09 18:46:18 -05:00
tworrall
f8fe9f870a VIVO-629 added GlobalCitationCount to publications class group 2013-12-09 13:13:31 -05:00
Jon Corson-Rikert
b2756b85d5 Merge branch 'maint-rel-1.6' of github.com:vivo-project/VIVO into maint-rel-1.6 2013-12-09 12:49:15 -05:00
Jon Corson-Rikert
6e3648f8c8 Added owl:inverse for geopolitical:hasMember, geopolitical:isPredecessorOf, bibo:CitedBy, bibo:reviewOf, bibo:translator, bibo:hasTranslation, vivo:hasAssociatedConcept, vivo:subcontractsGrant, vivo:hasPrerequisite, vivo:hasPublicationVenue, vivo:offeredBy, vivo:publisher, skos:broader as detailed on https://docs.google.com/spreadsheet/ccc?key=0AqosQY8NM9BGdGVub2lKcVdtOE85LW5oRWZOVjlfSFE&usp=sharing 2013-12-09 12:49:06 -05:00
tworrall
496cedaabb range change for VIVO-592 2013-12-09 11:56:58 -05:00
Jon Corson-Rikert
1a69b23b60 Added inverse property relationship between vivo:offers and vivo:offeredBy 2013-12-06 18:41:09 -05:00
Jon Corson-Rikert
bd929d7158 added inverse property relationship between bibo:translator and vivo:translatorOf 2013-12-06 18:16:25 -05:00
Jon Corson-Rikert
46db6f6933 Added Software to the class group publications (“research”); corrected class group name on Protocol; relabeled “documentation for service” to “documentation for project or resource” 2013-12-06 16:56:40 -05:00
Jon Corson-Rikert
ea93eea861 Merge branch 'maint-rel-1.6' of github.com:vivo-project/VIVO into maint-rel-1.6 
Conflicts:
	rdf/tbox/firsttime/initialTBoxAnnotations.n3
 2013-12-06 13:47:09 -05:00
Jon Corson-Rikert
f7863669e8 Minor changes to hide additional eagle-i properties that are deprecated or involve classes not currently in VIVO 2013-12-06 13:23:57 -05:00
brianjlowe
dba0fafea1 VIVO-624 removed 8 object properties whose domain or range classes aren't being included 2013-12-06 12:51:03 -05:00
brianjlowe
1ed07aa8c8 remove hasAccessionNumber, which only applies to reagents and the like 2013-12-05 16:20:22 -05:00
brianjlowe
691da05ff8 data property adjustments 2013-12-05 16:05:22 -05:00
Jon Corson-Rikert
417179fd81 adding Organism to the class group publications (labeled research) to see if the derives from property works 2013-12-05 15:58:19 -05:00
Jon Corson-Rikert
9687b9cb85 Merge branch 'maint-rel-1.6' of github.com:vivo-project/VIVO into maint-rel-1.6 2013-12-05 10:41:42 -05:00
Jon Corson-Rikert
86a9c7804c Changes to annotations on eagle-i properties for biological specimen and instrument 2013-12-05 10:41:31 -05:00
brianjlowe
2251cc09bc adding obo:Organism class 2013-12-05 10:31:49 -05:00
Jon Corson-Rikert
aef0e6ce39 Added a statement declaring a research project (obi:ERO_0000014) subclass of vivo:Project 2013-12-04 16:47:09 -05:00
brianjlowe
47d9ff55c8 VIVO-612 remove vivo:TransnationalRegion 2013-12-04 10:37:14 -05:00
Jon Corson-Rikert
2f9d2133a9 minor changes for wording (facility for vs. site for) and adding Protocol to the class group research; made ‘has specified input’ and ‘achieves planned objective’ nobody/nobody 2013-12-04 07:13:18 -05:00
tworrall
6a1fa38ea0 set the stubObjectProperty annotation to false for owl:sameAs 2013-12-03 15:56:26 -05:00
Jon Corson-Rikert
2932f48aec Tweaks to hide sameAs (nobody/nobody) and adjust facility-org location of/location property labels based on testing 2013-12-03 15:14:24 -05:00
tworrall
13c10e3adb correcting class group settings 2013-12-03 13:44:48 -05:00
Jon Corson-Rikert
f47733b3ff Working to clarify relations between Facility and Event, Facility and Geographic Location, and Geographic Locations and other individuals 2013-12-02 19:13:35 -05:00
Jon Corson-Rikert
bfabd2beea Merge branch 'maint-rel-1.6' of github.com:vivo-project/VIVO into maint-rel-1.6 2013-12-02 18:05:00 -05:00
Jon Corson-Rikert
13f6557866 Additional changes to property groups focusing on Project and Research Project 2013-12-02 18:04:48 -05:00
tworrall
19c95c1670 fixes for VIVO-591, VIVO-592, VIVO-594, VIVO-597, VIVO-598 and VIVO-601 2013-12-02 17:06:51 -05:00
brianjlowe
dd24baad8b VIVO-596 adding Grant properties to Contract 2013-12-02 15:43:39 -05:00
Jon Corson-Rikert
188087c993 Further changes to property group and class group membership, primarily for Service and its subclasses but also to enable a create option for a hasPart relationship with geographic locations 2013-12-02 13:24:01 -05:00
Jon Corson-Rikert
8ec28b71de Continued minor changes in property placement and ordering 2013-11-26 17:18:39 -05:00
Jon Corson-Rikert
8bae848816 Additional changes related to VIVO-557 — duplication of property labels and/or statements where restrictions are in the file graph TBox 2013-11-25 16:51:49 -05:00
Jon Corson-Rikert
d779300c9d Merge branch 'maint-rel-1.6' of github.com:vivo-project/VIVO into maint-rel-1.6 2013-11-25 10:10:54 -05:00