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51 commits

Author SHA1 Message Date
j2blake
ac7ef7209f VIVO-978 clarify the instructions for alternative triple stores 2015-02-23 13:34:19 -05:00
j2blake
ed239f64a7 VIVO-978 move applicationSetup.n3 to example.applicationSetup.n3 and add comments. 2015-02-23 11:13:11 -05:00
j2blake
9a16aeeff3 VIVO-870 Make the number of threads configurable. 
Also, clean up the shutdown process and some comments.
 2015-01-18 18:45:24 -05:00
j2blake
5b89014105 VIVO-873 Adapt the client code to the new interface. 
Create a bridge implementation of SearchIndexerImpl that just wraps around an old IndexBuilder.

Modify client code:
Application, BasicAuthenticator, SearchServiceController, SparqlUpdateApiController,
UpdateUrisInIndex and VClassGroupCache

Rewrite IndexController to use AJAX and to show the current status and history of the indexer events.
 2015-01-07 16:19:06 -05:00
j2blake
c1ae62a917 VIVO-778 Use JFact as the TBox reasoner, instead of Pellet. 
There are still some differences between the two, and I expect  some answers from Jon and Brian regarding irregularities in the ontologies.

The Pellet libraries have not yet been removed.
 2014-12-17 17:44:41 -05:00
j2blake
05854a3354 VIVO-778 Connect the plumbing properly. 
Make TBoxReasonerModule a module on the Application. Make the reasoner status available through the module.
Initialize it in startup_listeners.txt
Create a concrete class for PelletTBoxReasonerModule, and configure it in applicationSetup.n3

Get rid of PelletReasonerSetup.

Make it so the ExecutorService in BasicTBoxReasonerDriver uses a VitroBackgroundThread.,
 2014-12-03 16:36:46 -05:00
j2blake
78241be685 VIVO-906 Assemble application at runtime. 
Create an object to represent VitroHomeDirectory
Instantiate TripleSources, FileStorage, etc, based on the config file.
 2014-11-13 17:17:38 -05:00
j2blake
3839b9a57e Example ORCID setup was out of date. 2014-10-13 15:35:42 -04:00
j2blake
b46859b9a7 fix licensing complaint from Jenkins 2014-05-16 10:49:25 -04:00
j2blake
989e1d944d fix licensing complaint from Jenkins 2014-05-16 10:36:49 -04:00
j2blake
939950dcd4 VIVO-769 Merge branch 'feature/orcid' into develop 2014-05-07 17:32:38 -04:00
j2blake
36087a25c0 Convert install instructions and upgrade instructions to Wiki pages and PDF. 2014-01-21 18:14:09 -05:00
tworrall
646776ebe9 corected a typo 2013-12-12 13:41:35 -05:00
hudajkhan
5795a0c65b vivo613 removing files with copyright and utilizing a different set of libraries for semantic search 2013-12-04 12:56:45 -05:00
j2blake
3ab396dcc7 VIVO-453 language filtering defaults to “false 2013-11-17 13:19:49 -05:00
j2blake
24dc0f212a VIVO-541 First cut at the developer panel. 2013-11-17 11:51:56 -05:00
j2blake
be3f22bca6 VIVO-523 Change the way the example language files are presented. 2013-11-14 17:04:22 -05:00
j2blake
082fe6cef3 Create more reasonable example for language property 2013-11-08 13:53:26 -05:00
j2blake
fe81ba5927 VIVO-465 Adjust the Vitro.reconcile.defaultTypeList to suit the ISF 2013-11-01 10:57:55 -04:00
j2blake
bd3af842f3 VIVO-382 move the VIVO copy of example.runtime.properties so it overrides the Vitro version. 2013-10-23 10:17:20 -04:00
j2blake
c1801fc2a2 VIVO-4 remove the license substitution code from the license scanner 
Now, it only scans.
 2013-08-26 14:57:05 -04:00
tworrall
af28ab07b2 license info for the leaflet js library 2013-04-30 15:25:34 -04:00
j2blake
9047ce5a9c NIHVIVO-3772 Fix some license issues (at least temporarily) with the OpenSocial code. Ask Eric for how to resolve long-term. 2012-06-05 20:29:12 +00:00
hjkhjk54
907a17fb45 updates for license info for semantic web service code integration. Removing VIVO license line from files with MIT license. NIHVIVO-3496 2011-12-13 22:13:19 +00:00
hjkhjk54
cceaa0813e updates for license info for semantic web service code integration. NIHVIVO-3496 2011-12-13 21:10:10 +00:00
jeb228
a377314e5b NIHVIVO-2136 add license tags to XML files. 2011-03-03 20:24:14 +00:00
mb863
9b3ce6ecd5 Added exception to the license-insertion process: 
# PROBLEM: Can't find any info on licensing.
productMods/js/jquery_plugins/jquery.truncator.js
 2011-02-02 17:38:19 +00:00
nac26
67ebb79083 Update to 3rd party licensing for RaphaelJS and removed all references to Pictos font 2011-01-24 18:16:11 +00:00
hlm7
e6ba5ca20e Holly updated the comments in known_exceptions.txt. 2011-01-14 15:43:39 +00:00
mb863
f84cc726ac Removed pictos font because we can't distribute this font with the application. 2011-01-12 15:59:46 +00:00
jeb228
89a3c3bfba NIHVIVO-1129 Add the detailed report XSL stylesheet to the known_exceptions file. 2011-01-10 21:36:50 +00:00
jeb228
e6c8b84802 Allow for additional jquery plugins in VIVO productMods. 2011-01-06 21:24:40 +00:00
jeb228
a556600d2c Recognize additional JQuery plugins as 3rd-party code. 2011-01-05 19:54:25 +00:00
jeb228
7077cbea1b NIHVIVO-1129 XSL files must be tagged or listed as known exceptions. 2011-01-05 19:31:37 +00:00
jeb228
cab7ae870d Note an exception for the Raphael plugin for JQuery. 2010-12-09 20:42:13 +00:00
yuysun
5df405f21f 2010-12-08 19:39:47 +00:00
yuysun
898d2e0da3 2010-12-08 19:38:38 +00:00
mb863
5ab172e929 Updated list of exception files in VIVO 2010-10-06 19:41:10 +00:00
mb863
69d548436f NIHVIVO-555. Added comment to page.ftl and added new path files to the 
license-insertion process file
 2010-10-06 16:08:25 +00:00
mb863
e164e2af8e NIHVIVO-555. Added a list of files and directories that are known exceptions to the license-insertion process. 2010-10-06 15:38:43 +00:00
rjy7
d28f59f58f Removing jquery.Jcrop.css - now using version in jquery jcrop plugin package in vitro 2010-07-08 23:56:01 +00:00
rjy7
9140fe1130 NIHVIVO-649 update for new theme template directory structure 2010-07-08 17:20:00 +00:00
jeb228
9993eeea12 NIHVIVO-161 Fix license tags for image upload files. 2010-06-30 14:02:43 +00:00
jeb228
36c0fb29c3 Add license tags, or list as known exceptions. 2010-06-22 14:56:16 +00:00
rjy7
b8928a54c4 Added link to support doc on adding analytics code to googleAnalytics.ftl. Added this file to known_exceptions.txt for licenser. 2010-06-21 22:08:33 +00:00
jeb228
03a2f1cfe9 NIHVIVO-644 Add Freemarker templates to the list of licensed file types: *.ftl 2010-06-21 14:03:51 +00:00
jeb228
5b77126d36 NIHVIVO-241 Move the licenser script into Vitro core, with some re-writing to use relative paths and such, and changes to the build scripts to support it. 2010-04-15 20:20:35 +00:00
jeb228
f4ec3afc11 NIHVIVO-119 No need for vitroUsers.owl.template, since the initial admin user is now created directly from deploy.properties 2010-02-23 18:51:19 +00:00
jeb228
710ddfedc6 NIHVIVO-56 Adjust to the restructured core build script - use a build that is based on the core product-build script. 2010-02-21 18:46:05 +00:00
jeb228
fcba81c3a4 NIHVIVO-15 Adjust to the changes in the Vitro configuration properties files. 2010-02-03 15:10:24 +00:00