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2160 commits

Author SHA1 Message Date
Nate Prewitt
99bbcde2d9 fixing missing/bad data for Rwanda 2015-03-30 15:46:56 -06:00
j2blake
7ab6e3d5fc VIVO-1008 Don't override the mime type if the servlet container can provide it. 
In CharsetEncodingFilter, check to see whether the servlet container knows the mime type,
before forcing it to "text/html;charset=UTF-8"
 2015-03-27 15:39:06 -04:00
j2blake
db8002d9d9 Correct syntax on robots.txt 
Also, add /listrdf/ and /individual/
 2015-03-27 12:53:38 -04:00
j2blake
d9ee2562df VIVO-941 Fix prefixes in broken queries for Rich Export LOD 2015-03-25 15:14:13 -04:00
Tim Worrall
ca3904d84f VIVO-1000: fixed all.properties gaffe 2015-03-20 16:23:41 -04:00
Tim Worrall
4875fe566e VIVO-970: needed to break out the more/less javascript toggle into a separate file. 2015-03-16 11:02:05 -04:00
j2blake
061db63d75 VIVO-958 Accommodate a migration directly from 1.5 data to 1.8 
Move data directory from ontologies/update to version-specific directory ontologies/update17to18
Create ontologies/update15to16 and ontologies/update16to17 from previous update data directories.

Revise UpdateKnowledgeBase to accept the data directory as a parameter instead of having it hard-coded.
Create classes like Release18Migrator that will call UpdateKnowledgeBase with the appropriate directory, and do other release-specific migration tasks.

Make corresponding changes in startup_listeners.txt
 2015-03-13 12:14:57 -04:00
Tim Worrall
d004f3b3e6 No Jira issue but related to VIVO-989. Object properties for which the range is the union of multiple classes needed their own list view. The default list view, which pulls in the object type, does not work for these properties. 2015-03-11 13:56:03 -04:00
Tim Worrall
cff62dd0cf VIVO-973: make Standard Web Link the default selected option when adding a web page. 2015-02-16 14:04:45 -05:00
Jon Corson-Rikert
183da6fd56 Quick fix to VIVO-975 where there's a missing 'type' parameter in a Freemarker call that throws an exception 2015-02-16 10:35:18 -05:00
Jim Blake
a732a9d060 Revert "Start ABox recompute after searchindexer" 2015-02-15 09:11:26 -05:00
Jim Blake
31acbf7ad8 Merge pull request #16 from grahamtriggs/listener-order 
Start ABox recompute after searchindexer
 2015-02-15 09:06:32 -05:00
Tim Worrall
14d5dce59d No Jira issue. A minor change to the microformats so that the itemtype is applied based on educational process subclass. 2015-02-11 16:49:04 -05:00
Graham Triggs
e511aa8bae Start ABox recompute after searchindexer 2015-02-11 21:28:02 +00:00
Tim Worrall
36227770a8 Merge branch 'develop' into feature/microformats 2015-02-11 16:18:38 -05:00
tworrall
6c82131d93 Merge pull request #15 from nateprewitt/feature/microformats 
minor changes for University and Person names with schema.org markup

Merging this, but I'm going to update the educationalTraining template to include a check of the ?subclass variable. If it's "EducationalProcess" or "PostdoctoralTraining", I'll include the item type. (tlw72)
 2015-02-10 17:01:16 -05:00
Tim Worrall
50193c9627 Merge branch 'develop' of https://github.com/vivo-project/VIVO into develop 2015-02-10 16:35:04 -05:00
Tim Worrall
5eb177b8e6 VIVO-928: added microformats to non persons. Typing goes two levels down in some cases for organizations. Some info content entities covered, though many types not covered by schema.org 2015-02-10 16:34:12 -05:00
Jim Blake
18b0a4156d Merge pull request #14 from nateprewitt/develop 
removed extra } from title attributes to reflect fixes in vitro template...
 2015-02-10 14:59:08 -05:00
Nate Prewitt
a4c625d63d removed extra } from title attributes to reflect fixes in vitro templates 2015-02-10 12:23:47 -07:00
Nate Prewitt
d121f725be minor changes for University and Person names with schema.org markup 2015-02-10 12:17:48 -07:00
Tim Worrall
03c894c463 git commit a754164 redux: putting these list view changes back in (and the wheel goes round and round) 2015-02-10 11:29:17 -05:00
Tim Worrall
fe8dc7bac3 backing out previous list view change -- list view and template 2015-02-09 17:34:12 -05:00
Tim Worrall
a7541643f4 VIVO-965: list view changes so that non-faux properties will be collated correctly 2015-02-09 17:13:16 -05:00
Tim Worrall
b3c5aaa794 VIVO-904: the display limit annotation on data and faux properties now determines when the more... link is employed for one of these properties. Regular object properties will have a default limit of 5. Also, the add statement link is no longer suppressed when the display limit is reached. 2015-02-09 15:54:39 -05:00
Tim Worrall
862ff2f9fe fixed variable name linked to javascript issue 2015-02-06 12:37:38 -05:00
Tim Worrall
2044b0dcec Merge branch 'develop' of https://github.com/vivo-project/VIVO into develop 2015-02-06 12:35:39 -05:00
Tim Worrall
5c0e031af8 VIVO-960: vcard Individuals now display correctly on the manage authors page and can have their rank in the authorship list modified. 2015-02-06 12:35:33 -05:00
hudajkhan
10c1a24305 VIVO-955 adding a flag already present in customFormWithAutocomplete's logic to clear out the label field for a URI that already exists 2015-02-05 10:36:04 -05:00
Tim Worrall
ee74186463 backing out previous change to this template. 2015-01-16 13:45:25 -05:00
Tim Worrall
f2e661e99c VIVO-920: made clarifications within gui so the dates associated with the visualizations made more sense. 2014-12-23 13:23:44 -05:00
Tim Worrall
469200d93e No Jira issue. Added the Freemarker ?url builtin to an href attribute. 2014-12-18 09:05:21 -05:00
j2blake
77dd381a19 VIVO-863 get rid of GuardAgainstUnmigratedRDB 
It was only useful for the transition from 1.6 to 1.7, and it was a problem when someone used a triple-store other than SDB.
 2014-12-11 16:13:05 -05:00
j2blake
16a97bad6a Merge branch 'develop' of git+ssh://github.com/vivo-project/VIVO into develop 2014-12-11 15:52:38 -05:00
j2blake
6d8c50bb53 VIVO-933 Read PropertyConfig.n3 into an existing model, just once. 2014-12-11 15:52:29 -05:00
tworrall
c25e726e85 Merge pull request #13 from nateprewitt/develop 
Fixed query variables for organizationForTraining list view config; JIRA...
 2014-12-11 15:39:55 -05:00
Nate
6ed94fcafe Fixed query variables for organizationForTraining list view config; JIRA VIVO-932 2014-12-10 16:13:13 -05:00
j2blake
fc3827712b VIVO-695 VIVO-699 Refactor and optimize the PropertyRestrictionBean 
Formerly the PropertyRestrictionPolicyHelper.
 2014-12-10 15:02:15 -05:00
j2blake
131f0a8c03 Merge branch 'develop' into feature/fauxEditing 2014-12-08 15:56:43 -05:00
j2blake
1e42cfa09e VIVO-778 Refactor the connections to the TBox reasoner. 
Replace PelletListener with a TBoxReasonerModule in the Application.
   The reasoner will be accessible only through here, not as a context attribute or through the WebappDaoFactory.
Split out the initialization of the TBox reasoner from SimpleReasonerSetup.
Break out the filtering of TBox changes into a ConfiguredReasonerListener.
Refactor the threading logic into a BasicTBoxReasonerDriver.
   Add a factory for creating VitroBackgroundThreads in an Executor.
Isolate the actual reasoner into a TBoxReasoner implementation. In this case, PelletTBoxReasoner.
Combine the consistency flag, error flag, explanation, and running status into one TBoxReasonerStatus object.
 2014-12-08 10:54:26 -05:00
Tim Worrall
3188fa7676 VIVO-927: fixed number formatting issue which appeared with international users 2014-12-05 17:01:32 -05:00
Tim Worrall
c511d9353a VIVO-922: update web.xml for new faux listing controller 2014-12-05 16:55:41 -05:00
Tim Worrall
1770c41a35 No Jira issue. Links to departments on the home page were not working if the uri was not the default namespace. 2014-12-03 12:35:55 -05:00
Tim Worrall
ce3c4a3539 Merge branch 'develop' into feature/microformats 
Merging the latest changes in develop into the microformats branch. Necessary before doing ther pull request and merging microformats back into develop. (I think.)
 2014-11-25 13:10:51 -05:00
Tim Worrall
f1c10e8768 added optional role in field to the custom form for editor role 2014-11-21 11:07:18 -05:00
j2blake
4e5fe68057 add rangeUri (as ?objectType) to default list view 
Be sure that it is required.
 2014-11-18 18:12:25 -05:00
j2blake
3407603a0f Merge branch 'develop' into feature/fauxEditing 2014-11-18 11:57:24 -05:00
Tim Worrall
ff4442d6eb add rangeUri (as ?objectType) to default list view 2014-11-17 15:36:47 -05:00
j2blake
68b06322fb VIVO-906 Explicitly configure the SearchIndexExcluders and DocumentModifiers. 2014-11-13 17:18:13 -05:00
j2blake
78241be685 VIVO-906 Assemble application at runtime. 
Create an object to represent VitroHomeDirectory
Instantiate TripleSources, FileStorage, etc, based on the config file.
 2014-11-13 17:17:38 -05:00