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Author SHA1 Message Date
Ralph O'Flinn
6fe665781b
Merge pull request #145 from awoods/vivo-1747 
Update puppycrawl dependency to 8.29
 2020-03-07 07:08:20 -06:00
Andrew Woods
702dd75164 Update puppycrawl dependency to 8.29 
Resolves: https://jira.lyrasis.org/browse/VIVO-1747
 2020-03-04 16:21:45 -05:00
Ralph O'Flinn
7fdcd6e264
Merge pull request #144 from awoods/vivo-1741 
Update example default triple store from SDB to TDB
 2020-02-25 08:53:31 -06:00
Andrew Woods
9b97bcd98c code review 2020-02-24 18:41:36 -05:00
Andrew Woods
56d2ee130f Update example default triple store from SDB to TDB 
Resolves: https://jira.lyrasis.org/browse/VIVO-1741
 2020-02-24 17:05:40 -05:00
Graham Triggs
d9571cbcce [VIVO-1737] Update Error Prone (#142) 
Resolves: https://jira.lyrasis.org/browse/VIVO-1737
 2020-01-23 13:14:29 -05:00
gneissone
6481558597 Co-author visualization: Change cursor type when hovering over link 2019-11-19 12:09:57 -05:00
gneissone
e80efb863a Fix visualization tool css selector 2019-11-19 12:08:36 -05:00
gneissone
14b5c82698 Fix unbound research area query 2019-11-01 18:27:08 -04:00
Ralph O'Flinn
4b18675112 [maven-scm-plugin] prepare development vivo-1.11.1-SNAPSHOT 2019-10-21 04:38:26 -05:00
Ralph O'Flinn
f0d3a70fba [maven-scm-plugin] prepare release vivo-1.11.0 2019-10-21 04:35:52 -05:00
Graham Triggs
d3b377b3a7 [VIVO-1670] ORCID - Disable Step 2 and Internationalization (#130) 
* Internationalize ORCiD add an iD
* ORCID Internationalization, allow Step 2 to be disabled if only a public API key

Resolves: https://jira.duraspace.org/browse/VIVO-1670
 2019-08-09 09:29:00 -04:00
Don Elsborg
06d266ea94 Vivo 1287 (#137) 
Remove five subclass axioms from five classes that had been subclass of skos:Concept; add subClassOf(DateTimeValuePrecision, Quality)

Resolves VIVO-1287
https://jira.duraspace.org/browse/VIVO-1287
 2019-08-09 15:14:31 +03:00
Graham Triggs
f597b7ee42 [VIVO-1415] Add publication claiming from PubMed and CrossRef (#129) 
* Claiming interface for DOI and PMID
* Allow http://doi.org urls in the claim process
* Make button i18n compliant
* Check Editor already claimed, error for no citation, PUMCIDs fixed
* Fixed gnarly DOI containing semi-colon (removed semi-colon as separator), match more DOI formats internally, improve AUTH restrictions
* Add Wilma themes
* Add permissions to allow proxy editors
* Update DOI resolver URI for content negotiation
* CSS changes to prevent layout problems in admin pages
* Add selectable list of publication types on import

Resolves to https://jira.duraspace.org/browse/VIVO-1415
 2019-08-08 10:15:17 -04:00
Ralph O'Flinn
0a08c2890d VIVO-1614 - Update to allow the TPF API to be toggled via the runtime.properties. (#136) 
* Update to allow the TPF API to be toggled via the runtime.properties.

Resolves: https://jira.duraspace.org/browse/VIVO-1614
 2019-08-02 13:20:31 -04:00
Andrew Woods
c0ad14b734 Create initial format style enforcement (#127) 
- All rules are initially suppressed

Resolves: https://jira.duraspace.org/browse/VIVO-1692
 2019-07-25 13:49:59 +03:00
Arfon Smith
89bdf16008 Update paper.bib (#134) 2019-07-24 12:15:48 -04:00
Brian Lowe
cfd154b9b6
Merge pull request #135 from vivo-project/dev-search 
dev-search
 2019-07-24 17:12:19 +03:00
hauschke
05ba04df9e Update paper.bib (#133) 
deleted comma
 2019-07-15 12:20:22 -04:00
hauschke
3d08253c47 Update paper.bib (#132) 
Added dates to websites according the respective website, checked links, updated urldates, added "author = {VIVO Project}" to the references of "About Vitro" and "VIVO-ISF-Ontology", changes "Vivo-isf-ontology" to "VIVO-ISF-Ontology".
 2019-07-15 10:28:53 -04:00
hauschke
abc152cfec Paper revision (#131) 
* minor fix in Acknowledgement

* Added references

* Added 2 ORCIDs
 2019-07-12 23:40:52 -04:00
Ben
1e487a8238 Set Tenderfoot pub chart height (#125) 2019-07-09 11:03:33 -04:00
Ralph O'Flinn
27cb119918 fixing merge error 2019-06-24 08:43:28 -05:00
Ralph O'Flinn
92d0fe98c5 Merge branch 'sprint-search' into dev-search 
# Conflicts:
#	installer/solr/src/main/webResources/WEB-INF/classes/log4j.properties
#	webapp/src/main/webapp/WEB-INF/resources/startup_listeners.txt
 2019-06-21 09:50:40 -05:00
Graham Triggs
06726e0979 [VIVO-1656] Extension mechansim for passing properties to templates (#128) 
* [VIVO-1656] Extension mechansim for passing properties to templates for Individuals

* [VIVO-1656] Extension mechansim for passing properties to templates for Individuals
 2019-06-07 13:02:07 -04:00
Ben
87092cec9c [VIVO-1690] - Remove trailing whitespace throughout project (#126) 
* Remove trailing whitespace throughout project

Resolves: https://jira.duraspace.org/browse/VIVO-1690
** Along with: https://github.com/vivo-project/Vitro/pull/117
 2019-05-03 12:51:00 -04:00
Mike Conlon
48dcf87199
Update README.md 2019-04-14 16:09:43 -04:00
Mike Conlon
9f34f5ee98
Add Zenodo DOI 
Click on the DOI badge to visit the Zenodo community collection archive for VIVO
 2019-04-14 16:09:21 -04:00
hudajkhan
11eaa119dd
Merge pull request #124 from awoods/sprint-search 
Update sprint-search to current develop branch
 2019-04-03 12:44:05 -04:00
Andrew Woods
f6eb0eb64b Update default startup_listeners.txt for ElasticSearch 
Related to: https://jira.duraspace.org/browse/VIVO-1600
 2019-04-03 12:25:19 -04:00
Andrew Woods
adfbe22950 Remove embedded Solr 
Related to: https://jira.duraspace.org/browse/VIVO-1592
 2019-04-03 12:25:16 -04:00
alessandroGalasso
8511073240 [VIVO-1641] Replace afn:localname / afn:namespace with cross-platform equivalent (#96) 
* Update listViewConfig-default.xml
* 1641 repalce localname
* [VIVO-1641] REPLACE jena afn with cross-platform regex

Resolves https://jira.duraspace.org/browse/VIVO-1641
 2019-03-20 13:22:35 -04:00
Ralph O'Flinn
5dfa919ec7
Merge pull request #121 from vivo-project/bugfix/VIVO-1677 
[VIVO-1677] Change legacy Google Maps link to use https
 2019-02-22 12:06:56 -06:00
gneissone
c827f65def Change legacy Google Maps link to use https 2019-02-21 16:12:12 -07:00
Graham Triggs
8c7986d7bd [VIVO-1672] Fix NullPointer in visualisations (#118) 2019-02-12 12:20:09 -07:00
Graham Triggs
490ddad8ba Fix for Plum Analytics badge on wrong publications 2019-02-12 10:50:39 -05:00
Ben
ba2ee238ad [VIVO-1671] Restrict context node labels added to search index to relationships (#117) 
Resolves: https://jira.duraspace.org/browse/VIVO-1671

* Restrict context node labels added to search index to relationships
 2019-01-25 09:45:27 -05:00
gneissone
3da53e27fe Replace antrun-plugin <tasks> with <target> in pom.xml files 2019-01-14 17:27:32 -05:00
Don Elsborg
87c98fd6fb [VIVO-1619] Create weblinks for data properties that have a range of anyURI and begin with http (#94) 
Related to: https://jira.duraspace.org/browse/VIVO-1619

* weblinks for dataprops of range URI
* addressed issues identified by Benjamin and Graham
* dependent on Vitro Pull 101
 2019-01-08 09:48:32 -05:00
gneissone
4b2a2c1bd8 Fix validation on personHasAdvisorRelationship.ftl 2018-12-07 16:04:59 -05:00
Stefan-Wolff
7a963c2ef9 [VIVO-1528] annotate fields for HTML editing (#100) 
* annotate fields for HTML editing

Resolves: https://jira.duraspace.org/browse/VIVO-1528
 2018-12-07 09:15:25 -05:00
William Welling
3af36c7cf4 corrected pom in order to template child module build number (#106) 
Resolves: https://jira.duraspace.org/browse/VIVO-1607

Supersedes: https://github.com/vivo-project/VIVO/pull/91
 2018-12-06 10:51:13 -05:00
Mike Conlon
fda5e83102 [VIVO 1647] - Improve AgrovocService.java using diamond operator (#97) 
* Use diamond operator on ArrayList declarations
* Use the diamond operator to simpplify declarations

Resolves: https://jira.duraspace.org/browse/VIVO-1647
 2018-12-05 15:02:22 -05:00
Laura Wrubel
9580863285 [VIVO-1340] Fix links to documentation in runtime.properties (#98) 
Resolves: https://jira.duraspace.org/browse/VIVO-1340
 2018-12-05 14:54:09 -05:00
Laura Wrubel
db07d321e5 Updating AGROVOC REST API base URL. (#104) 
* Resolves with https://jira.duraspace.org/browse/VIVO-1655
 2018-12-05 13:30:15 -05:00
Ralph O'Flinn
50f3f6a84e
Merge pull request #92 from awoods/vivo-1600 
Update default startup_listeners.txt for ElasticSearch
 2018-11-03 01:40:14 -05:00
Ralph O'Flinn
e22b1c0bd1
Merge pull request #83 from awoods/vivo-1592 
[VIVO-1592] Remove embedded Solr
 2018-11-03 01:28:13 -05:00
Andrew Woods
54f1b04e04 Add Travis-CI Badge to README.md (#93) 
Resolves: https://jira.duraspace.org/browse/VIVO-1618
 2018-10-31 11:18:54 -04:00
Graham Triggs
ebc75d184b [VIVO-1605] Update to latest Error Prone plugin and configuration to support JDK 11 (#89) 
* Update to latest Error Prone plugin and configuration to support JDK 11

* Update Error Prone dependency from SNAPSHOT

* Add Javac version missing from Error Prone docs

Partial resolution of: https://jira.duraspace.org/browse/VIVO-1605
 2018-10-25 12:52:08 -04:00
Graham Triggs
2f12d0830e Add i18n create/edit variables to service provider role template (#81) 2018-10-10 14:57:30 +03:00