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78 commits

Author SHA1 Message Date
Georgy Litvinov
74545944e4 Save query and rules at compilation creation 2021-02-23 22:31:14 +01:00
Georgy Litvinov
bd3b2f31ea Added modification time to compilation generator 2021-02-21 21:54:21 +01:00
Georgy Litvinov
e7699bdd14 Removed mistakenly added spaces from uri 2021-01-30 15:14:15 +01:00
Georgy Litvinov
acbd96f852 Added compilation generator 2021-01-24 21:18:21 +01:00
Georgy Litvinov
ab2cc8e54a Fix for previous commit 2020-09-15 23:26:14 +02:00
Georgy Litvinov
8af3732fb2 Added formGenerator for excerpts and articles 2020-09-15 18:30:49 +02:00
Graham Triggs
d3b377b3a7 [VIVO-1670] ORCID - Disable Step 2 and Internationalization (#130) 
* Internationalize ORCiD add an iD
* ORCID Internationalization, allow Step 2 to be disabled if only a public API key

Resolves: https://jira.duraspace.org/browse/VIVO-1670
 2019-08-09 09:29:00 -04:00
Graham Triggs
f597b7ee42 [VIVO-1415] Add publication claiming from PubMed and CrossRef (#129) 
* Claiming interface for DOI and PMID
* Allow http://doi.org urls in the claim process
* Make button i18n compliant
* Check Editor already claimed, error for no citation, PUMCIDs fixed
* Fixed gnarly DOI containing semi-colon (removed semi-colon as separator), match more DOI formats internally, improve AUTH restrictions
* Add Wilma themes
* Add permissions to allow proxy editors
* Update DOI resolver URI for content negotiation
* CSS changes to prevent layout problems in admin pages
* Add selectable list of publication types on import

Resolves to https://jira.duraspace.org/browse/VIVO-1415
 2019-08-08 10:15:17 -04:00
Graham Triggs
06726e0979 [VIVO-1656] Extension mechansim for passing properties to templates (#128) 
* [VIVO-1656] Extension mechansim for passing properties to templates for Individuals

* [VIVO-1656] Extension mechansim for passing properties to templates for Individuals
 2019-06-07 13:02:07 -04:00
Ben
87092cec9c [VIVO-1690] - Remove trailing whitespace throughout project (#126) 
* Remove trailing whitespace throughout project

Resolves: https://jira.duraspace.org/browse/VIVO-1690
** Along with: https://github.com/vivo-project/Vitro/pull/117
 2019-05-03 12:51:00 -04:00
alessandroGalasso
8511073240 [VIVO-1641] Replace afn:localname / afn:namespace with cross-platform equivalent (#96) 
* Update listViewConfig-default.xml
* 1641 repalce localname
* [VIVO-1641] REPLACE jena afn with cross-platform regex

Resolves https://jira.duraspace.org/browse/VIVO-1641
 2019-03-20 13:22:35 -04:00
Graham Triggs
8c7986d7bd [VIVO-1672] Fix NullPointer in visualisations (#118) 2019-02-12 12:20:09 -07:00
Mike Conlon
fda5e83102 [VIVO 1647] - Improve AgrovocService.java using diamond operator (#97) 
* Use diamond operator on ArrayList declarations
* Use the diamond operator to simpplify declarations

Resolves: https://jira.duraspace.org/browse/VIVO-1647
 2018-12-05 15:02:22 -05:00
Laura Wrubel
db07d321e5 Updating AGROVOC REST API base URL. (#104) 
* Resolves with https://jira.duraspace.org/browse/VIVO-1655
 2018-12-05 13:30:15 -05:00
Graham Triggs
cc6e836d94 [VIVO-1402] Improve search page performance by rewriting OPTIONAL query for person information 2017-10-16 15:48:03 +01:00
Graham Triggs
d93b722cd7 [VIVO-1317] Convert Visualizations to Jackson from Gson 2017-10-02 21:03:04 +01:00
Graham Triggs
c52939af35 Fix string comparisons 2017-09-18 18:31:45 +01:00
Graham Triggs
980c48f84b Update itext 2017-09-18 16:28:30 +01:00
Graham Triggs
959888534b Fix string check 2017-09-18 16:20:07 +01:00
Graham Triggs
bf55aaf7d5 Minor code improvements 2017-09-18 13:47:18 +01:00
Graham Triggs
43dea89dae Minor code improvements 2017-09-18 11:50:07 +01:00
Graham Triggs
7f47babcff Minor performance improvements 2017-09-18 10:27:47 +01:00
Graham Triggs
9f9c6d610b Various code improvements from IntelliJ inspections 2017-09-18 00:21:18 +01:00
Graham Triggs
93244bd488 [VIVO-1320] Convert some org.json usages to Jackson 2017-09-15 16:06:53 +01:00
Graham Triggs
7d52bd097f [VIVO-1320] Convert some org.json usages to Jackson 2017-09-15 15:01:04 +01:00
Graham Triggs
5ba226bde7 [VIVO-1367] Update AGROVOC URL 2017-09-13 20:27:27 +01:00
Graham Triggs
930507a694 [VIVO-1311] Implementation of UMLS datasource using NLM APIs 2017-09-12 15:29:11 +01:00
Graham Triggs
75fe93093c Better document requirements of templates, for anyone needing to customise 2017-09-08 12:32:48 +01:00
Graham Triggs
7b38c2e8e7 Change file name 2017-09-06 19:30:48 +01:00
Graham Triggs
d508f09ed9 [VIVO-1379] Add CTSA search endpoints to VIVO 2017-09-06 19:26:00 +01:00
Graham Triggs
5e3b29d734 Fix broken site admin links 2017-08-31 00:03:09 +01:00
Graham Triggs
426064cc81 [VIVO-1294] Create VIVO application level messages distinct from theme messages (theme messages now only contain those not use at an application level) 2017-08-29 22:59:03 +01:00
Graham Triggs
8bf1b10e53 [VIVO-1375] Upgrade to Servlet 3.0 spec 2017-08-25 08:51:51 +01:00
Graham Triggs
ca6d629e2f [VIVO-1346] Updates to ORCiD client library integration (preparation for v2.0) 2017-07-27 17:33:43 +01:00
Graham Triggs
9df0f009ed [VIVO-1342] Use XML parser to generate valid GraphML files 2017-07-14 14:57:16 +01:00
Jim Blake
668ab0c10d VIVO-1319 Remove dependency on sourceforge.net JSON parser. (#53) 
* VIVO-1247, remove duplicate code used with ConfigurationBeanLoader.

Now that the @Property annotation includes cardinality parameters, we can remove a lot of duplicate code.

* Use Jackson JSON library instead of net.sf.json

JSONNode, JSONArray, JSONObject become JsonNode, ArrayNode, and ObjectNode.
No direct replacement for HSONSerializer, so create JacksonUtils

Some of the message signatures are different, so adjust accordingly.
 2017-05-22 19:59:29 +01:00
Graham Triggs
5f0ef22ed1 Merge branch 'develop' into feature/theming 
# Conflicts:
#	webapp/src/main/webapp/js/d3.min.js
 2017-04-30 19:31:41 +01:00
Nate Prewitt
34afa4e43b
updating license path 2017-04-21 17:12:47 -06:00
Graham Triggs
9e2f8439ef Cumulative publications graph 2017-04-07 15:25:48 -06:00
hudajkhan
d98f513318 [VIVO-1316] moving base lookup services for vocabulary services to Vitro (#50) 2017-02-10 15:55:41 +00:00
Jim Blake
da0b68f001 VIVO-1248 extend SparqlQueryRunner, and combine with older attempts. (#36) 
* VIVO-1247, remove duplicate code used with ConfigurationBeanLoader.

Now that the @Property annotation includes cardinality parameters, we can remove a lot of duplicate code.

* Ignore artifacts that Eclipse creates.

* VIVO-1248 Remove references to older SPARQL utils

edu.cornell.mannlib.vitro.webapp.utils.sparql package
edu.cornell.mannlib.vitro.webapp.utils.SparqlQueryRunner
 2017-01-03 13:19:48 -05:00
Jim Blake
15638f6ac1 VIVO-1247, remove duplicate code used with ConfigurationBeanLoader. (#47) 
Now that the @Property annotation includes cardinality parameters, we can remove a lot of duplicate code.
 2017-01-03 12:16:38 -05:00
Graham Triggs
fe5db3142d Gemet moved to HTTPS 2016-12-24 10:54:56 +00:00
Graham Triggs
1b67e75e28 Fix StringUtils import (shouldn’t have been using the one in Axis) 2016-12-24 09:28:42 +00:00
Graham Triggs
c5c9997764 Fix StringUtils import (shouldn’t have been using the one in Axis) 2016-12-24 09:24:34 +00:00
Graham Triggs
c2b1cf8d73 Remove unused Agrovoc web services code 2016-12-21 09:59:09 +00:00
Graham Triggs
3a3cac9513 Change CSV parser 2016-12-20 08:47:21 +00:00
Graham Triggs
06200d37ec Update commons-lang to 3.4 (same as used by Jena 3.1.1) 2016-12-17 20:11:03 +00:00
Graham Triggs
5be5260ae7 Update ARQ urls for Jena 3 2016-12-15 10:10:17 +00:00
hudajkhan
da8943e64a [VIVO-1306] fixing LCSH lookup (#45) 2016-12-06 14:16:50 +00:00