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115 commits

Author SHA1 Message Date
Graham Triggs
5ba226bde7 [VIVO-1367] Update AGROVOC URL 2017-09-13 20:27:27 +01:00
Graham Triggs
930507a694 [VIVO-1311] Implementation of UMLS datasource using NLM APIs 2017-09-12 15:29:11 +01:00
Graham Triggs
75fe93093c Better document requirements of templates, for anyone needing to customise 2017-09-08 12:32:48 +01:00
Graham Triggs
7b38c2e8e7 Change file name 2017-09-06 19:30:48 +01:00
Graham Triggs
d508f09ed9 [VIVO-1379] Add CTSA search endpoints to VIVO 2017-09-06 19:26:00 +01:00
Graham Triggs
e3c804088c Use latest orcid-api-client 2017-08-31 15:54:42 +01:00
Graham Triggs
5e3b29d734 Fix broken site admin links 2017-08-31 00:03:09 +01:00
Graham Triggs
426064cc81 [VIVO-1294] Create VIVO application level messages distinct from theme messages (theme messages now only contain those not use at an application level) 2017-08-29 22:59:03 +01:00
Graham Triggs
8bf1b10e53 [VIVO-1375] Upgrade to Servlet 3.0 spec 2017-08-25 08:51:51 +01:00
Graham Triggs
d0b971f7e6 [VIVO-1346] Update to orcid-client 0.4 2017-08-17 23:36:19 +01:00
Graham Triggs
2f45fc7178 Update versions for beta 2 release 2017-07-27 17:39:43 +01:00
Graham Triggs
ca6d629e2f [VIVO-1346] Updates to ORCiD client library integration (preparation for v2.0) 2017-07-27 17:33:43 +01:00
Graham Triggs
9df0f009ed [VIVO-1342] Use XML parser to generate valid GraphML files 2017-07-14 14:57:16 +01:00
Graham Triggs
5bcdd34c92 Reset develop to SNAPSHOT release 2017-06-12 21:54:13 +01:00
Graham Triggs
deefe90f39 Beta version 2017-06-09 15:57:45 +01:00
Jim Blake
668ab0c10d VIVO-1319 Remove dependency on sourceforge.net JSON parser. (#53) 
* VIVO-1247, remove duplicate code used with ConfigurationBeanLoader.

Now that the @Property annotation includes cardinality parameters, we can remove a lot of duplicate code.

* Use Jackson JSON library instead of net.sf.json

JSONNode, JSONArray, JSONObject become JsonNode, ArrayNode, and ObjectNode.
No direct replacement for HSONSerializer, so create JacksonUtils

Some of the message signatures are different, so adjust accordingly.
 2017-05-22 19:59:29 +01:00
Graham Triggs
5f0ef22ed1 Merge branch 'develop' into feature/theming 
# Conflicts:
#	webapp/src/main/webapp/js/d3.min.js
 2017-04-30 19:31:41 +01:00
Nate Prewitt
34afa4e43b
updating license path 2017-04-21 17:12:47 -06:00
Graham Triggs
9e2f8439ef Cumulative publications graph 2017-04-07 15:25:48 -06:00
hudajkhan
d98f513318 [VIVO-1316] moving base lookup services for vocabulary services to Vitro (#50) 2017-02-10 15:55:41 +00:00
Jim Blake
da0b68f001 VIVO-1248 extend SparqlQueryRunner, and combine with older attempts. (#36) 
* VIVO-1247, remove duplicate code used with ConfigurationBeanLoader.

Now that the @Property annotation includes cardinality parameters, we can remove a lot of duplicate code.

* Ignore artifacts that Eclipse creates.

* VIVO-1248 Remove references to older SPARQL utils

edu.cornell.mannlib.vitro.webapp.utils.sparql package
edu.cornell.mannlib.vitro.webapp.utils.SparqlQueryRunner
 2017-01-03 13:19:48 -05:00
Jim Blake
15638f6ac1 VIVO-1247, remove duplicate code used with ConfigurationBeanLoader. (#47) 
Now that the @Property annotation includes cardinality parameters, we can remove a lot of duplicate code.
 2017-01-03 12:16:38 -05:00
Graham Triggs
877b54f4a6 Moved jaxrpc from Vitro 2016-12-24 12:07:11 +00:00
Graham Triggs
fe5db3142d Gemet moved to HTTPS 2016-12-24 10:54:56 +00:00
Graham Triggs
1b67e75e28 Fix StringUtils import (shouldn’t have been using the one in Axis) 2016-12-24 09:28:42 +00:00
Graham Triggs
c5c9997764 Fix StringUtils import (shouldn’t have been using the one in Axis) 2016-12-24 09:24:34 +00:00
Graham Triggs
ddff01d29f Remove Axis (only used by agrovocws) 2016-12-24 09:20:58 +00:00
grahamtriggs
fd00dfbc0d [VIVO-1312] Linked Data Fragments initial implementation (#48) 2016-12-23 21:55:28 +00:00
Graham Triggs
c2b1cf8d73 Remove unused Agrovoc web services code 2016-12-21 09:59:09 +00:00
Graham Triggs
3a3cac9513 Change CSV parser 2016-12-20 08:47:21 +00:00
Graham Triggs
06200d37ec Update commons-lang to 3.4 (same as used by Jena 3.1.1) 2016-12-17 20:11:03 +00:00
Graham Triggs
5be5260ae7 Update ARQ urls for Jena 3 2016-12-15 10:10:17 +00:00
hudajkhan
da8943e64a [VIVO-1306] fixing LCSH lookup (#45) 2016-12-06 14:16:50 +00:00
Graham Triggs
8ee3e1e74f [VIVO-1289] Fix “add a new item of this type” 2016-11-14 19:09:45 +00:00
Graham Triggs
03550cc220 Update version numbers 2016-10-31 19:47:04 +00:00
Nate Prewitt
33c5367146 adding missing space from prefix definitions (#42) 2016-10-25 20:49:17 +01:00
Graham Triggs
1865b525b8 [VIVO-1270] Initial commit of Jena 3 2016-09-02 19:59:21 +01:00
Graham Triggs
1dbfffa2c8 [VIVO-1262] Minor correction in the visualisation cache 2016-08-18 06:59:13 -06:00
Graham Triggs
3bafa451f2 [VIVO-1261] Allow for caches to always be used without pauses in time critical situations. 2016-08-18 06:13:04 -06:00
Graham Triggs
6881257f57 Only use Google Maps API key if configured 2016-07-29 16:42:31 +01:00
Graham Triggs
2ca805b4ff Threading improvements (part 2) 2016-07-28 22:39:05 +01:00
Graham Triggs
4d8bfe1a65 Threading improvements 2016-07-28 22:22:20 +01:00
Graham Triggs
f43db39084 Add key for Google Maps (Map of Science) 2016-07-28 22:10:17 +01:00
Graham Triggs
605a88b4ff [VIVO-1237] Add sitemap for profiles 2016-07-04 19:13:20 +01:00
Graham Triggs
275f6f335b Simplify dependency management 2016-06-24 20:28:26 +01:00
Graham Triggs
20ab5259c0 JavaDoc changes required to prevent the release process breaking. 2016-06-23 20:03:22 +01:00
Graham Triggs
da9057ff9b Fix issue with renamed prefix in SPARQL query for visualisations 2016-06-20 18:55:10 +01:00
Graham Triggs
7a2d415cfa [VIVO-1121] Remove Flash visualisations 2016-06-20 18:54:35 +01:00
grahamtriggs
ee7b974ac5 [VIVO-1249] Add capability maps for research areas (#35) 
* Initial capability map implementation

* Add autocomplete

* Make headers update the info panel

* Ajax retrieval of person details - reduce memory requirements and startup time

* Remove old referer info

* Handle missing labels.

* Fix refresh button; add menu entry for new installations
 2016-06-20 17:01:51 +01:00
Graham Triggs
46f099162a [VIVO-1235] Fix temporal graph CSV save all missing data 2016-05-31 20:42:30 +01:00