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Author SHA1 Message Date
j2blake
ac7ef7209f VIVO-978 clarify the instructions for alternative triple stores 2015-02-23 13:34:19 -05:00
j2blake
ed239f64a7 VIVO-978 move applicationSetup.n3 to example.applicationSetup.n3 and add comments. 2015-02-23 11:13:11 -05:00
Jon Corson-Rikert
b7e2b37c6e Adding a union range on the inverse property (translatorOf) to match the union domain on translator, from VIVOONT-23 2015-02-18 14:36:45 -05:00
Tim Worrall
cff62dd0cf VIVO-973: make Standard Web Link the default selected option when adding a web page. 2015-02-16 14:04:45 -05:00
Tim Worrall
aee276cb13 no Jira issue. There was an extraneous quotation mark in line 165. 2015-02-16 11:52:39 -05:00
Jon Corson-Rikert
e6f4eaf35d Resolving VIVOONT-23 to make bio:translator consistent with the BIBO ontology, where it has a union domain of bibo:Document and bibo:Collection 2015-02-16 10:45:49 -05:00
Jon Corson-Rikert
71579b6894 Resolving VIVO-844, enabling publisher to be added from report 2015-02-16 10:42:50 -05:00
Jon Corson-Rikert
b9f2272bb5 Fixing VIVOONT-20, where vivo:Division was erroneously a subclass of vivo:ExtensionUnit 2015-02-16 10:39:12 -05:00
Jon Corson-Rikert
e54a995c35 Resolving VIVOONT-17 including adding the spreadsheet of new academic degrees contributed by Paul Albert 2015-02-16 10:36:16 -05:00
Jon Corson-Rikert
183da6fd56 Quick fix to VIVO-975 where there's a missing 'type' parameter in a Freemarker call that throws an exception 2015-02-16 10:35:18 -05:00
Jim Blake
d6f7baf8a8 Merge pull request #17 from vivo-project/revert-16-listener-order 
Revert "Start ABox recompute after searchindexer"
 2015-02-15 09:13:30 -05:00
Jim Blake
a732a9d060 Revert "Start ABox recompute after searchindexer" 2015-02-15 09:11:26 -05:00
Jim Blake
31acbf7ad8 Merge pull request #16 from grahamtriggs/listener-order 
Start ABox recompute after searchindexer
 2015-02-15 09:06:32 -05:00
Tim Worrall
14d5dce59d No Jira issue. A minor change to the microformats so that the itemtype is applied based on educational process subclass. 2015-02-11 16:49:04 -05:00
Graham Triggs
e511aa8bae Start ABox recompute after searchindexer 2015-02-11 21:28:02 +00:00
Tim Worrall
36227770a8 Merge branch 'develop' into feature/microformats 2015-02-11 16:18:38 -05:00
tworrall
6c82131d93 Merge pull request #15 from nateprewitt/feature/microformats 
minor changes for University and Person names with schema.org markup

Merging this, but I'm going to update the educationalTraining template to include a check of the ?subclass variable. If it's "EducationalProcess" or "PostdoctoralTraining", I'll include the item type. (tlw72)
 2015-02-10 17:01:16 -05:00
Tim Worrall
50193c9627 Merge branch 'develop' of https://github.com/vivo-project/VIVO into develop 2015-02-10 16:35:04 -05:00
Tim Worrall
5eb177b8e6 VIVO-928: added microformats to non persons. Typing goes two levels down in some cases for organizations. Some info content entities covered, though many types not covered by schema.org 2015-02-10 16:34:12 -05:00
Jim Blake
18b0a4156d Merge pull request #14 from nateprewitt/develop 
removed extra } from title attributes to reflect fixes in vitro template...
 2015-02-10 14:59:08 -05:00
Nate Prewitt
a4c625d63d removed extra } from title attributes to reflect fixes in vitro templates 2015-02-10 12:23:47 -07:00
Nate Prewitt
d121f725be minor changes for University and Person names with schema.org markup 2015-02-10 12:17:48 -07:00
Tim Worrall
03c894c463 git commit a754164 redux: putting these list view changes back in (and the wheel goes round and round) 2015-02-10 11:29:17 -05:00
Tim Worrall
fe8dc7bac3 backing out previous list view change -- list view and template 2015-02-09 17:34:12 -05:00
Tim Worrall
a7541643f4 VIVO-965: list view changes so that non-faux properties will be collated correctly 2015-02-09 17:13:16 -05:00
Tim Worrall
b3c5aaa794 VIVO-904: the display limit annotation on data and faux properties now determines when the more... link is employed for one of these properties. Regular object properties will have a default limit of 5. Also, the add statement link is no longer suppressed when the display limit is reached. 2015-02-09 15:54:39 -05:00
j2blake
3cf15eaa95 Update the example 2015-02-07 13:14:25 -05:00
j2blake
f8b29f8415 Merge branch 'develop' into feature/searchIndexerRefine 2015-02-06 15:23:38 -05:00
j2blake
7a47c6b75d VIVO-869 Drastically simplify the search configuration. 
Create LabelsAcrossContextNodes to replace AdditionalURIsForContextNodes. It's more configurable.
Create SelectQueryUriFinder to replace AdditionalUrisForVCards. It's more configurable.
Rename SimpleSparqlQueryDocumentModifier to SelectQueryDocumentModifier, to conform.
Radically simplify the VIVO search configuration, omitting all special cases except those for VCards.
 2015-02-06 15:22:28 -05:00
Tim Worrall
862ff2f9fe fixed variable name linked to javascript issue 2015-02-06 12:37:38 -05:00
Tim Worrall
2044b0dcec Merge branch 'develop' of https://github.com/vivo-project/VIVO into develop 2015-02-06 12:35:39 -05:00
Tim Worrall
5c0e031af8 VIVO-960: vcard Individuals now display correctly on the manage authors page and can have their rank in the authorship list modified. 2015-02-06 12:35:33 -05:00
hudajkhan
10c1a24305 VIVO-955 adding a flag already present in customFormWithAutocomplete's logic to clear out the label field for a URI that already exists 2015-02-05 10:36:04 -05:00
Tim Worrall
431847165b VIVO-954: updated to include the autocomplete custom form for the publisherOf property. 2015-01-30 10:21:00 -05:00
j2blake
250a701213 VIVO-869 Cleanup: Committer, shorter event type, ALLTEXTUNSTEMMED, et. al. 
Get rid of the SearchIndexerSetup.Committer listener class. This functionality becomes internal to UpdateUrisTask.
Use shorter names for Event.Type values, so the display will be more compact.
ALLTEXTUNSTEMMED is not automatically populated from ALLTEXT, so change the default target field on
    SimpleSparqlQueryDocumentModifier to include both of them.
Trivial cleanup in UpdateDocumentWorkUnit.
Create StackTraceLayout, a simple Log4J layout that will print the stack trace for each call.
    Used for diagnosing the source of uninformative log messages.
 2015-01-26 10:18:52 -05:00
Tim Worrall
39062cb5e2 added some log.isDebugEnabled checks. No Jira issue. 2015-01-23 08:57:41 -05:00
Tim Worrall
dfb1b05691 VIVO-943: removing Spanish language label from initialTBoxAnnotations. 2015-01-22 16:21:20 -05:00
j2blake
c85aed6943 VIVO-870 Move VivoAgentContextNodeFields into the configuration. 
Delete VivoAgentContextNodeFields and its tests and the data files for the tests.
 2015-01-22 12:38:43 -05:00
brianjlowe
4eeb0f5c09 VIVO-850 fixes some incorrect intersectionOf axioms in vCard filegraph 2015-01-20 16:44:32 +02:00
j2blake
9a16aeeff3 VIVO-870 Make the number of threads configurable. 
Also, clean up the shutdown process and some comments.
 2015-01-18 18:45:24 -05:00
j2blake
e724ecd50c Merge branch 'develop' into feature/searchIndexerTry 2015-01-16 16:54:50 -05:00
j2blake
20bf51d7c9 VIVO-870 Move the DocumentModifiers into the configuration. 2015-01-16 16:53:43 -05:00
Tim Worrall
ee74186463 backing out previous change to this template. 2015-01-16 13:45:25 -05:00
j2blake
2d2c5032cc VIVO-870 Start moving DocumentModifiers into the configuration. 
Create the SimpleSparqlQueryDocumentModifier.
Use it to replace VivoISFGrantFields and VivoInformationResourceContextNodeFields.
 2015-01-16 11:51:24 -05:00
j2blake
86f9714fb6 VIVO-870 Confirm that DocumentModifiers are thread-safe. 2015-01-12 18:08:37 -05:00
j2blake
6a49dbf7ec VIVO-870 Implement UpdateStatementsTask. 
Also add the listener to support it and get rid of the last of the vestigial classes.
 2015-01-12 15:15:37 -05:00
j2blake
69711960bc VIVO-870 Make IndexingUriFinders configurable. 
Use no-argument constructors, supplying data through the ContextModelsUser interface as needed.

Add toString() methods to IndexingUriFinders, DocumentModifiers and SearchIndexExcluders
 2015-01-07 17:26:07 -05:00
j2blake
5b89014105 VIVO-873 Adapt the client code to the new interface. 
Create a bridge implementation of SearchIndexerImpl that just wraps around an old IndexBuilder.

Modify client code:
Application, BasicAuthenticator, SearchServiceController, SparqlUpdateApiController,
UpdateUrisInIndex and VClassGroupCache

Rewrite IndexController to use AJAX and to show the current status and history of the indexer events.
 2015-01-07 16:19:06 -05:00
j2blake
af8bd10cee VIVO-873 restructure packages for SearchIndexer 
documentBuilding, exclusions, and indexing, under  searchindex instead of search.
 2015-01-04 17:19:30 -05:00
j2blake
5acaace4b1 Merge branch 'feature/pelletRemoval' into develop 2014-12-31 15:13:43 -05:00