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Author SHA1 Message Date
j2blake
19b515c5cc Merge branch 'feature/elk' into develop 2014-12-17 17:48:07 -05:00
j2blake
c1ae62a917 VIVO-778 Use JFact as the TBox reasoner, instead of Pellet. 
There are still some differences between the two, and I expect  some answers from Jon and Brian regarding irregularities in the ontologies.

The Pellet libraries have not yet been removed.
 2014-12-17 17:44:41 -05:00
Tim Worrall
653cfa4557 VIVO-866: was able to accomplish this by changing the range on an existing faux property from bibo:DocumentPart to bibo:Document. 2014-12-17 10:37:56 -05:00
j2blake
02f68f17de Merge branch 'develop' into feature/elk 2014-12-11 16:24:16 -05:00
j2blake
77dd381a19 VIVO-863 get rid of GuardAgainstUnmigratedRDB 
It was only useful for the transition from 1.6 to 1.7, and it was a problem when someone used a triple-store other than SDB.
 2014-12-11 16:13:05 -05:00
j2blake
16a97bad6a Merge branch 'develop' of git+ssh://github.com/vivo-project/VIVO into develop 2014-12-11 15:52:38 -05:00
j2blake
6d8c50bb53 VIVO-933 Read PropertyConfig.n3 into an existing model, just once. 2014-12-11 15:52:29 -05:00
tworrall
c25e726e85 Merge pull request #13 from nateprewitt/develop 
Fixed query variables for organizationForTraining list view config; JIRA...
 2014-12-11 15:39:55 -05:00
Nate
6ed94fcafe Fixed query variables for organizationForTraining list view config; JIRA VIVO-932 2014-12-10 16:13:13 -05:00
j2blake
fc3827712b VIVO-695 VIVO-699 Refactor and optimize the PropertyRestrictionBean 
Formerly the PropertyRestrictionPolicyHelper.
 2014-12-10 15:02:15 -05:00
j2blake
131f0a8c03 Merge branch 'develop' into feature/fauxEditing 2014-12-08 15:56:43 -05:00
Tim Worrall
3a732d366d Merge branch 'develop' of https://github.com/vivo-project/VIVO into develop 2014-12-08 12:42:14 -05:00
Tim Worrall
48f3722428 No Jira issue. Added a boolean to indicate whether an individual is an event. For the microformats. 2014-12-08 12:42:06 -05:00
j2blake
1e42cfa09e VIVO-778 Refactor the connections to the TBox reasoner. 
Replace PelletListener with a TBoxReasonerModule in the Application.
   The reasoner will be accessible only through here, not as a context attribute or through the WebappDaoFactory.
Split out the initialization of the TBox reasoner from SimpleReasonerSetup.
Break out the filtering of TBox changes into a ConfiguredReasonerListener.
Refactor the threading logic into a BasicTBoxReasonerDriver.
   Add a factory for creating VitroBackgroundThreads in an Executor.
Isolate the actual reasoner into a TBoxReasoner implementation. In this case, PelletTBoxReasoner.
Combine the consistency flag, error flag, explanation, and running status into one TBoxReasonerStatus object.
 2014-12-08 10:54:26 -05:00
j2blake
c5230bce84 Merge branch 'develop' into feature/elk 2014-12-08 10:20:38 -05:00
Tim Worrall
721fc7437b No Jira issue. Updated PrpertyConfig.n3 so that an EventSeries can have a webpage. 2014-12-08 10:10:28 -05:00
Tim Worrall
3188fa7676 VIVO-927: fixed number formatting issue which appeared with international users 2014-12-05 17:01:32 -05:00
Tim Worrall
c511d9353a VIVO-922: update web.xml for new faux listing controller 2014-12-05 16:55:41 -05:00
j2blake
7ec849b599 Merge branch 'develop' into feature/elk 2014-12-03 17:12:33 -05:00
j2blake
a1da475c2c VIVO-778 Restructure the driver and connect the plumbing properly. 
Create a concrete class for PelletTBoxReasonerModule, and configure it in applicationSetup.n3
Get rid of PelletReasonerSetup in favor of ApplicationImpl$ReasonersSetup.
 2014-12-03 17:11:45 -05:00
j2blake
05854a3354 VIVO-778 Connect the plumbing properly. 
Make TBoxReasonerModule a module on the Application. Make the reasoner status available through the module.
Initialize it in startup_listeners.txt
Create a concrete class for PelletTBoxReasonerModule, and configure it in applicationSetup.n3

Get rid of PelletReasonerSetup.

Make it so the ExecutorService in BasicTBoxReasonerDriver uses a VitroBackgroundThread.,
 2014-12-03 16:36:46 -05:00
Tim Worrall
1770c41a35 No Jira issue. Links to departments on the home page were not working if the uri was not the default namespace. 2014-12-03 12:35:55 -05:00
j2blake
9a478ab64d VIVO-778 Separate PelletReasonerSetup from SimpleReasonerSetup. 2014-11-26 16:32:15 -05:00
j2blake
f8c72450d0 BOGUS - add a TBoxReasonerSmokeTest at startup to insure that the generated inferences don't change by my actions. 2014-11-26 11:38:36 -05:00
j2blake
72e441fd4b VIVO-778 Separate PelletReasonerSetup from SimpleReasonerSetup. 2014-11-26 11:26:34 -05:00
tworrall
4966d98539 Merge pull request #12 from vivo-project/feature/microformats 
Feature/microformats
 2014-11-25 13:17:44 -05:00
Tim Worrall
ce3c4a3539 Merge branch 'develop' into feature/microformats 
Merging the latest changes in develop into the microformats branch. Necessary before doing ther pull request and merging microformats back into develop. (I think.)
 2014-11-25 13:10:51 -05:00
Tim Worrall
f1c10e8768 added optional role in field to the custom form for editor role 2014-11-21 11:07:18 -05:00
j2blake
4e5fe68057 add rangeUri (as ?objectType) to default list view 
Be sure that it is required.
 2014-11-18 18:12:25 -05:00
Tim Worrall
4ee01cfe71 VIVO-901: allow more classes to have webpages 2014-11-18 12:14:18 -05:00
j2blake
3407603a0f Merge branch 'develop' into feature/fauxEditing 2014-11-18 11:57:24 -05:00
Tim Worrall
ff4442d6eb add rangeUri (as ?objectType) to default list view 2014-11-17 15:36:47 -05:00
j2blake
78abb25c6f VIVO-867 correct misspellings. 2014-11-13 18:00:22 -05:00
j2blake
e233c01e43 Update doc for 1.8 2014-11-13 17:59:31 -05:00
j2blake
68b06322fb VIVO-906 Explicitly configure the SearchIndexExcluders and DocumentModifiers. 2014-11-13 17:18:13 -05:00
j2blake
78241be685 VIVO-906 Assemble application at runtime. 
Create an object to represent VitroHomeDirectory
Instantiate TripleSources, FileStorage, etc, based on the config file.
 2014-11-13 17:17:38 -05:00
j2blake
786fb9f226 Merge commit '66bee080fcac387c90296ddb62763a8091929dc3' into feature/fauxEditing 2014-11-06 10:29:33 -05:00
Tim Worrall
66bee080fc updated PropertyConfig.n3 so that presenters could be added to a presentation 2014-11-04 09:32:14 -05:00
j2blake
53be4cc52f Faux property config files must be in "firsttime" now, not "every time". 2014-11-03 15:10:29 -05:00
j2blake
01b16b0992 Merge branch 'develop' into feature/fauxEditing 2014-10-30 15:54:38 -04:00
j2blake
a651e0fd1d VIVO-774 correct syntax errors in PropertyConfig.n3 2014-10-30 15:53:11 -04:00
Jim Blake
4fe6c78fce Merge pull request #11 from patrickmcelwee/patch-2 
Remove (incorrect) vitroPublic.owl from VIVO, so it will not override the (correct) version in Vitro
 2014-10-30 10:24:41 -04:00
Patrick McElwee
212626f0bb Remove vitroPublic.owl 
This file exists canonically in the Vitro project, and we don't want this version to
overwrite it.
 2014-10-30 10:21:00 -04:00
Jim Blake
6af5c1ccff Merge pull request #10 from nateprewitt/feature/microformats 
fixed required 'name' itemprop for Person and made position organization...
 2014-10-30 10:01:10 -04:00
j2blake
11979ad348 Revert "Revert "updated PropertyConfig.n3 to include rdfs labels for each faux property"" 
This reverts commit 087fafcd7a.
 2014-10-29 16:47:45 -04:00
hudajkhan
4ad8b4b417 authorship removal VIVO-891 and allowed concept classes being passed as array instead of hardcoded 2014-10-24 12:39:23 -04:00
j2blake
a35e3fb4f5 VIVO-873 Simplify and document the DocumentModifier interface. 
allUris parameter on modifyDocument() was not documented and not used.
There is no logical reason for modifyDocument to throw a SkipIndividualException.
 2014-10-16 12:31:42 -04:00
Nate Prewitt
4dec645dd8 fixed required 'name' itemprop for Person and made position organizations more descriptive; JIRA VIVO-882 2014-10-15 10:06:54 -06:00
j2blake
ac1db5a9e9 Merge branch 'feature/microformats' of github.com:nateprewitt/VIVO into nateprewitt-feature/microformats 2014-10-15 09:38:16 -04:00
Nate Prewitt
acef06450d Microformat markup for Persons using schema.org; JIRA VIVO-882 2014-10-14 15:44:40 -06:00