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vivo/productMods/WEB-INF/ontologies/update15to16/diff.tab.txt
j2blake 061db63d75 VIVO-958 Accommodate a migration directly from 1.5 data to 1.8 
Move data directory from ontologies/update to version-specific directory ontologies/update17to18
Create ontologies/update15to16 and ontologies/update16to17 from previous update data directories.

Revise UpdateKnowledgeBase to accept the data directory as a parameter instead of having it hard-coded.
Create classes like Release18Migrator that will call UpdateKnowledgeBase with the appropriate directory, and do other release-specific migration tasks.

Make corresponding changes in startup_listeners.txt
2015-03-13 12:14:57 -04:00

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http://purl.org/NET/c4dm/event.owl#agent Delete z
http://purl.org/NET/c4dm/event.owl#isAgentIn Delete z
http://purl.org/NET/c4dm/event.owl#produced_in http://purl.obolibrary.org/obo/RO_0002353 Yes z
http://purl.org/NET/c4dm/event.owl#product http://purl.obolibrary.org/obo/RO_0002234 Yes z
http://purl.org/dc/elements/1.1/isVersionOf Delete z
http://vivoweb.org/ontology/core#administeredBy Delete complex construct with grant administrator role
http://purl.org/dc/terms/isReferencedBy Delete z
http://purl.org/dc/terms/isVersionOf Delete z
http://purl.org/dc/terms/publisher http://vivoweb.org/ontology/core#publisher Yes z
http://purl.org/ontology/bibo/editor Delete z
http://vivoweb.org/ontology/core#administers Delete complex construct with grant administrator role
http://vivoweb.org/ontology/core#advisee Delete CC - advising relationship plus add advisee role
http://vivoweb.org/ontology/core#adviseeIn Delete CC - advising relationship plus add advisee role
http://vivoweb.org/ontology/core#advisingContributionTo Delete construct
http://vivoweb.org/ontology/core#advisor Delete CC - advising relationship plus add advisor role
http://vivoweb.org/ontology/core#advisorIn Delete CC - advising relationship plus add advisor role
http://vivoweb.org/ontology/core#associatedRole http://vivoweb.org/ontology/core#relates Yes z
http://vivoweb.org/ontology/core#associatedWithPosition http://vivoweb.org/ontology/core#relatedBy Yes z
http://vivoweb.org/ontology/core#attendeeRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#authorInAuthorship http://vivoweb.org/ontology/core#relatedBy Yes z
http://vivoweb.org/ontology/core#awardConferred http://vivoweb.org/ontology/core#assigns Yes z
http://vivoweb.org/ontology/core#awardConferredBy http://vivoweb.org/ontology/core#assignedBy Yes z
http://vivoweb.org/ontology/core#awardOrHonor http://vivoweb.org/ontology/core#relatedBy Yes z
http://vivoweb.org/ontology/core#awardOrHonorFor http://vivoweb.org/ontology/core#relates Yes z
http://vivoweb.org/ontology/core#awardsGrant http://vivoweb.org/ontology/core#assigns Yes z
http://vivoweb.org/ontology/core#clinicalRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#co-PrincipalInvestigatorRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#courseOfferedBy http://vivoweb.org/ontology/core#offeredBy Yes z
http://vivoweb.org/ontology/core#credentialOf http://vivoweb.org/ontology/core#relates Yes z
http://vivoweb.org/ontology/core#currentMemberOf Delete construct MemberRole
http://vivoweb.org/ontology/core#currentlyHeadOf Delete construct LeaderRole
http://vivoweb.org/ontology/core#currentlyHeadedBy Delete construct LeaderRole
http://vivoweb.org/ontology/core#degreeEarned http://purl.obolibrary.org/obo/RO_0002234 Yes z
http://vivoweb.org/ontology/core#degreeOfferedBy http://vivoweb.org/ontology/core#offeredBy Yes z
http://vivoweb.org/ontology/core#degreeOutcomeOf http://purl.obolibrary.org/obo/RO_0002353 Yes z
http://vivoweb.org/ontology/core#domesticGeographicFocus http://vivoweb.org/ontology/core#geographicFocus Yes z
http://vivoweb.org/ontology/core#domesticGeographicFocusOf http://vivoweb.org/ontology/core#geographicFocusOf Yes z
http://vivoweb.org/ontology/core#editor Delete CC editorship
http://vivoweb.org/ontology/core#editorOf Delete CC editorship
http://vivoweb.org/ontology/core#editorRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#educationalTraining http://purl.obolibrary.org/obo/RO_0000056 Yes z
http://vivoweb.org/ontology/core#educationalTrainingOf http://purl.obolibrary.org/obo/RO_0000057 Yes z
http://vivoweb.org/ontology/core#equipmentInFacility http://purl.obolibrary.org/obo/RO_0001025 Yes """located in"""
http://vivoweb.org/ontology/core#eventWithin http://purl.obolibrary.org/obo/BFO_0000050 Yes """part of"""
http://vivoweb.org/ontology/core#geographicLocationOf http://purl.obolibrary.org/obo/RO_0001015 Yes """location of"""
http://vivoweb.org/ontology/core#geographicallyContains http://purl.obolibrary.org/obo/BFO_0000051 Yes """has part"""
http://vivoweb.org/ontology/core#geographicallyWithin http://purl.obolibrary.org/obo/BFO_0000050 Yes z
http://vivoweb.org/ontology/core#grantAwardedBy http://vivoweb.org/ontology/core#assignedBy Yes z
http://vivoweb.org/ontology/core#hasAttendeeRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasAttendeeRoleContext
http://vivoweb.org/ontology/core#hasClinicalRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasClinicalRoleContext
http://vivoweb.org/ontology/core#hasCo-PrincipalInvestigatorRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasCo-PrincipalInvestigatorRoleContext
http://vivoweb.org/ontology/core#hasCredential http://vivoweb.org/ontology/core#relatedBy Yes z
http://vivoweb.org/ontology/core#hasCurrentMember Delete construct MemberRole
http://vivoweb.org/ontology/core#hasEditorRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasEditorRoleContext
http://vivoweb.org/ontology/core#hasGeographicLocation http://purl.obolibrary.org/obo/RO_0001025 Yes """located in"""
http://vivoweb.org/ontology/core#hasInvestigatorRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasInvestigatorRoleContext
http://vivoweb.org/ontology/core#hasLeaderRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasLeaderRoleContext
http://vivoweb.org/ontology/core#hasMemberRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasMemberRoleContext
http://vivoweb.org/ontology/core#hasOrganizerRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasOrganizerRoleContext
http://vivoweb.org/ontology/core#hasOutreachProviderRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasOutreachProviderContext
http://vivoweb.org/ontology/core#hasPart http://purl.obolibrary.org/obo/BFO_0000051 Yes z
http://vivoweb.org/ontology/core#hasPresenterRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasPresenterRoleContext
http://vivoweb.org/ontology/core#hasPrincipalInvestigatorRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasPrincipalInvestigatorRoleContext
http://vivoweb.org/ontology/core#hasResearcherRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasResearcherRoleContext
http://vivoweb.org/ontology/core#hasReviewerRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasReviewerRoleContext
http://vivoweb.org/ontology/core#hasRole http://purl.obolibrary.org/obo/RO_0000053 Yes z
http://vivoweb.org/ontology/core#hasRoom http://purl.obolibrary.org/obo/BFO_0000051 Yes """has part"""
http://vivoweb.org/ontology/core#hasServiceProviderRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasServiceProviderRoleContext
http://vivoweb.org/ontology/core#hasSubGrant http://purl.obolibrary.org/obo/BFO_0000051 Yes z
http://vivoweb.org/ontology/core#hasSubOrganization http://purl.obolibrary.org/obo/BFO_0000051 Yes z
http://vivoweb.org/ontology/core#hasTeacherRole http://purl.obolibrary.org/obo/RO_0000053 Yes z
http://vivoweb.org/ontology/core#inEventSeries http://purl.obolibrary.org/obo/BFO_0000050 Yes """part of"""
http://vivoweb.org/ontology/core#includesEvent http://purl.obolibrary.org/obo/BFO_0000051 Yes z
http://vivoweb.org/ontology/core#informationProduct http://purl.obolibrary.org/obo/RO_0002234 Yes z
http://vivoweb.org/ontology/core#informationProductOf http://purl.obolibrary.org/obo/RO_0002353 Yes z
http://vivoweb.org/ontology/core#informationResourceInAuthorship http://vivoweb.org/ontology/core#relatedBy Yes z
http://vivoweb.org/ontology/core#internationalGeographicFocus http://vivoweb.org/ontology/core#geographicFocus Yes z
http://vivoweb.org/ontology/core#internationalGeographicFocusOf http://vivoweb.org/ontology/core#geographicFocusOf Yes z
http://vivoweb.org/ontology/core#investigatorRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes """inheres in"""
http://vivoweb.org/ontology/core#issuanceOfCredential http://vivoweb.org/ontology/core#relates Yes z
http://vivoweb.org/ontology/core#issuedCredential http://vivoweb.org/ontology/core#relatedBy Yes z
http://vivoweb.org/ontology/core#leaderRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#linkedAuthor http://vivoweb.org/ontology/core#relates Yes z
http://vivoweb.org/ontology/core#linkedInformationResource http://vivoweb.org/ontology/core#relates Yes z
http://vivoweb.org/ontology/core#locationOfEquipment http://purl.obolibrary.org/obo/RO_0001015 Yes z
http://vivoweb.org/ontology/core#mailingAddress Delete VCard
http://vivoweb.org/ontology/core#mailingAddressFor Delete VCard
http://vivoweb.org/ontology/core#memberRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#offersCourse http://vivoweb.org/ontology/core#offers Yes z
http://vivoweb.org/ontology/core#offersDegree http://vivoweb.org/ontology/core#offers Yes z
http://vivoweb.org/ontology/core#organizationForPosition http://vivoweb.org/ontology/core#relatedBy Yes z
http://vivoweb.org/ontology/core#organizationForTraining http://purl.obolibrary.org/obo/RO_0000056 Yes z
http://vivoweb.org/ontology/core#organizerRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#outcome http://purl.obolibrary.org/obo/RO_0002234 Yes z
http://vivoweb.org/ontology/core#outcomeOf http://purl.obolibrary.org/obo/RO_0002353 Yes z
http://vivoweb.org/ontology/core#outreachProviderRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#partOf http://purl.obolibrary.org/obo/BFO_0000050 Yes z
http://vivoweb.org/ontology/core#personInPosition http://vivoweb.org/ontology/core#relatedBy Yes z
http://vivoweb.org/ontology/core#positionForPerson http://vivoweb.org/ontology/core#relates Yes z
http://vivoweb.org/ontology/core#positionInOrganization http://vivoweb.org/ontology/core#relates Yes z
http://vivoweb.org/ontology/core#presenterRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#principalInvestigatorRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#providesService http://vivoweb.org/ontology/core#offers Yes z
http://vivoweb.org/ontology/core#realizedRole http://purl.obolibrary.org/obo/BFO_0000055 Yes """realizes"""
http://vivoweb.org/ontology/core#receipt http://vivoweb.org/ontology/core#relatedBy Yes z
http://vivoweb.org/ontology/core#receiptOf http://vivoweb.org/ontology/core#relates Yes z
http://vivoweb.org/ontology/core#relatedRole http://vivoweb.org/ontology/core#relates Yes z
http://vivoweb.org/ontology/core#researcherRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#reviewerRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#roleIn http://purl.obolibrary.org/obo/BFO_0000054 Yes """realized in"" (or delete, since there should be subs?)"
http://vivoweb.org/ontology/core#roleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#roleRealizedIn http://purl.obolibrary.org/obo/BFO_0000054 Yes z
http://vivoweb.org/ontology/core#roomWithinBuilding http://purl.obolibrary.org/obo/RO_0001025 Yes z
http://vivoweb.org/ontology/core#seriesForEvent http://purl.obolibrary.org/obo/BFO_0000051 Yes z
http://vivoweb.org/ontology/core#serviceProvidedBy http://vivoweb.org/ontology/core#offeredBy Yes z
http://vivoweb.org/ontology/core#serviceProviderRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#subGrantOf http://purl.obolibrary.org/obo/BFO_0000050 Yes z
http://vivoweb.org/ontology/core#subOrganizationWithin http://purl.obolibrary.org/obo/BFO_0000050 Yes z
http://vivoweb.org/ontology/core#teacherRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z
http://vivoweb.org/ontology/core#trainingAtOrganization http://purl.obolibrary.org/obo/RO_0000057 Yes z
http://vivoweb.org/ontology/core#authorRank http://vivoweb.org/ontology/core#rank Yes z
http://vivoweb.org/ontology/core#preferredTitle Delete z
http://vivoweb.org/ontology/core#EducationalTraining http://vivoweb.org/ontology/core#EducationalProcess Yes z
http://vivoweb.org/ontology/core#ServiceProviderRole http://purl.obolibrary.org/obo/ERO_0000012 Yes z
http://vivoweb.org/ontology/core#URLLink http://www.w3.org/2006/vcard/ns#URL Yes z
http://vivoweb.org/ontology/core#Agreement Delete z
http://vivoweb.org/ontology/core#InformationResource http://purl.obolibrary.org/obo/IAO_0000030 Yes z
http://vivoweb.org/ontology/core#Service http://purl.obolibrary.org/obo/ERO_0000005 Yes z
http://vivoweb.org/ontology/core#Software http://purl.obolibrary.org/obo/ERO_0000071 Yes z
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