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vivo/productMods/counter.jsp
j2blake 7bb8682454 Continue to reduce the Model Madness! 
Add OntModelCache to the top of the stack of RDF data structures.
Add DataStructuresProvider to the bottom of the stack.
Redesign ModelAccess method signatures.
Create the ShowSources page.
Remove RequestModelsPrep, except for setting the Collator.
Reduce the complexity of ContentModelsSetup and ConfigurationModelsSetup.

VIVO-225 VIVO-819 VIVO-820 VIVO-821 VIVO-823 VIVO-832
2014-10-10 10:08:10 -04:00

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<%-- $This file is distributed under the terms of the license in /doc/license.txt$ --%>
<%@ taglib uri="http://java.sun.com/jsp/jstl/core" prefix="c" %>
<%@ taglib uri="http://java.sun.com/jsp/jstl/functions" prefix="fn" %>
<%@ taglib uri="http://djpowell.net/tmp/sparql-tag/0.1/" prefix="sparql" %>
<%@ taglib uri="http://jakarta.apache.org/taglibs/string-1.1" prefix="str" %>
<%@ page import="java.net.URLDecoder" %>
<%@ page import="edu.cornell.mannlib.vitro.webapp.modelaccess.ModelAccess"%>
<% request.setAttribute("jenaOntModel", ModelAccess.on(getServletContext()).getOntModel()); %>
<div id="content">
<h2>Linkage Information</h2>
<ul>
<!--
Author-Resource
-->
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="inforauthorships">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (count(?author) as ?counts) WHERE {
?author rdf:type core:Authorship .
?author core:relates ?infor .
?infor rdf:type obo:IAO_0000030 .
}
</sparql:select>
<c:forEach items="${inforauthorships.rows}" var="inforauthorship" varStatus="counter">
<li><a href="#">'Person'-'InformationResource' linkages</a> (${inforauthorship.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="inforauthors">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (count(distinct ?author) as ?counts) WHERE {
?author core:relatedBy ?obj .
?author rdf:type foaf:Person .
?obj rdf:type core:Authorship .
?obj core:relates ?infor .
?infor rdf:type obo:IAO_0000030 .
}
</sparql:select>
<c:forEach items="${inforauthors.rows}" var="inforauthor" varStatus="counter">
<li><a href="#">'Person' entities which published 'InformationResource' entities</a> (${inforauthor.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="infors">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (count(distinct ?infor) as ?counts) WHERE {
?subj core:relates ?infor .
?infor rdf:type obo:IAO_0000030 .
}
</sparql:select>
<c:forEach items="${infors.rows}" var="infor" varStatus="counter">
<li><a href="#">'InformationResource' entities</a> (${infor.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
</ul>
<ul>
<!--
Author-Conference_Paper
-->
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="confauthorships">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
SELECT (count(?author) as ?counts) WHERE {
?author rdf:type core:Authorship .
?author core:relates ?infor .
?infor rdf:type core:ConferencePaper .
}
</sparql:select>
<c:forEach items="${confauthorships.rows}" var="confauthorship" varStatus="counter">
<li><a href="#">'Person'-'ConferencePaper' linkages</a> (${confauthorship.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="confauthors">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
SELECT (count(distinct ?author) as ?counts) WHERE {
?author core:relatedBy ?obj .
?author rdf:type foaf:Person .
?obj rdf:type core:Authorship .
?obj core:relates ?infor .
?infor rdf:type core:ConferencePaper .
}
</sparql:select>
<c:forEach items="${confauthors.rows}" var="confauthor" varStatus="counter">
<li><a href="#">'Person' entities which published 'ConferencePaper' entities</a> (${confauthor.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="confs">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
SELECT (count(distinct ?infor) as ?counts) WHERE {
?subj core:relates ?infor .
?infor rdf:type core:ConferencePaper .
}
</sparql:select>
<c:forEach items="${confs.rows}" var="conf" varStatus="counter">
<li><a href="#">'ConferencePaper' entities</a> (${conf.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
</ul>
<ul>
<!--
Author-Academic_Article
-->
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="acaauthorships">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
SELECT (count(?author) as ?counts) WHERE {
?author rdf:type core:Authorship .
?author core:relates ?infor .
?infor rdf:type bibo:AcademicArticle .
}
</sparql:select>
<c:forEach items="${acaauthorships.rows}" var="acaauthorship" varStatus="counter">
<li><a href="#">'Person'-'AcademicArticle' linkages</a> (${acaauthorship.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="acaauthors">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
SELECT (count(distinct ?author) as ?counts) WHERE {
?author core:relatedBy ?obj .
?author rdf:type foaf:Person .
?obj rdf:type core:Authorship .
?obj core:relates ?infor .
?infor rdf:type bibo:AcademicArticle .
}
</sparql:select>
<c:forEach items="${acaauthors.rows}" var="acaauthor" varStatus="counter">
<li><a href="#">'Person' entities which published 'AcademicArticle' entities</a> (${acaauthor.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="acas">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
SELECT (count(distinct ?infor) as ?counts) WHERE {
?subj core:relates ?infor .
?infor rdf:type bibo:AcademicArticle .
}
</sparql:select>
<c:forEach items="${acas.rows}" var="aca" varStatus="counter">
<li><a href="#">'AcademicArticle' entities</a> (${aca.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
</ul>
<ul>
<!--
Investigator-Grant
-->
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="piships">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
SELECT (count(*) as ?counts) WHERE {
?grant core:relates ?pi .
?grant rdf:type core:Grant .
?pi rdf:type core:InvestigatorRole .
}
</sparql:select>
<c:forEach items="${piships.rows}" var="piship" varStatus="counter">
<li><a href="#">'Person'-'Grant' linkages</a> (${piship.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="pis">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
SELECT (count(distinct ?pi) as ?counts) WHERE {
?grant core:relates ?pi .
?grant rdf:type core:Grant .
?pi rdf:type core:InvestigatorRole .
}
</sparql:select>
<c:forEach items="${pis.rows}" var="pi" varStatus="counter">
<li><a href="#">'Person' entities which are (co-)investigators on 'Grant' entities</a> (${pi.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="grants">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
SELECT (count(distinct ?grant) as ?counts) WHERE {
?grant rdf:type core:Grant .
}
</sparql:select>
<c:forEach items="${grants.rows}" var="grant" varStatus="counter">
<li><a href="#">'Grant' entities</a> (${grant.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
</ul>
<ul>
<!--
Teacher-Course
-->
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="teachings">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (count(*) as ?counts) WHERE {
?teacher obo:RO_0000053 ?obj .
?obj rdf:type core:teacherRole .
}
</sparql:select>
<c:forEach items="${teachings.rows}" var="teaching" varStatus="counter">
<li><a href="#">'Person'-'CourseSection' linkages</a> (${teaching.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="teachers">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (count(distinct ?teacher) as ?counts) WHERE {
?teacher core:teaching ?obj .
?teacher obo:RO_0000053 ?obj .
?obj rdf:type core:teacherRole .
}
</sparql:select>
<c:forEach items="${teachers.rows}" var="teacher" varStatus="counter">
<li><a href="#">'Person' entities which teach 'CourseSection' entities</a> (${teacher.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="courses">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
SELECT (count(?course) as ?counts) WHERE {
?course rdf:type core:Course .
}
</sparql:select>
<c:forEach items="${courses.rows}" var="course" varStatus="counter">
<li><a href="#">'Course' entities</a> (${course.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
</ul>
<ul>
<!--
Co-Author Linkage
-->
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="coauthors">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT (count(*) as ?counts) WHERE {
?author1 rdf:type core:Authorship .
?author2 rdf:type core:Authorship .
?author1 core:relates ?infor .
?author2 core:relates ?infor .
?infor rdf:type obo:IAO_0000030 .
FILTER (str(?author1) < str(?author2))
}
</sparql:select>
<c:forEach items="${coauthors.rows}" var="coauthor" varStatus="counter">
<li><a href="#">Total co-author linkages</a> (${coauthor.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
<!--
Distinct Co-Author Linkage
-->
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="discoauthors">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT DISTINCT ?author1 ?author2 WHERE {
?author1 rdf:type core:Authorship .
?author2 rdf:type core:Authorship .
?author1 core:relates ?infor .
?author2 core:relates ?infor .
?infor rdf:type obo:IAO_0000030 .
FILTER (str(?author1) < str(?author2))
}
</sparql:select>
<li><a href="#">Unique co-author linkages</a> (${fn:length(discoauthors.rows)})</li>
</sparql:sparql>
</sparql:lock>
</ul>
<ul>
<!--
Co-Investigator Linkage
-->
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="copis">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
SELECT (count(*) as ?counts) WHERE {
?grant core:relates ?pi1 .
?pi1 rdf:type core:InvestigatorRole .
?grant core:relates ?pi2 .
?pi1 rdf:type core:InvestigatorRole .
FILTER (str(?pi1) < str(?pi2))
}
</sparql:select>
<c:forEach items="${copis.rows}" var="copi" varStatus="counter">
<li><a href="#">Total co-investigator linkages</a> (${copi.counts.string})</li>
</c:forEach>
</sparql:sparql>
</sparql:lock>
<!--
Distinct Co-Investigator Linkage
-->
<sparql:lock model="${jenaOntModel }">
<sparql:sparql>
<sparql:select model="${jenaOntModel}" var="discopis">
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX akt: <http://www.aktors.org/ontology/portal#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
PREFIX core: <http://vivoweb.org/ontology/core#>
SELECT DISTINCT ?pi1 ?pi2 WHERE {
?grant core:relates ?pi1 .
?pi1 rdf:type core:InvestigatorRole .
?grant core:relates ?pi2 .
?pi1 rdf:type core:InvestigatorRole .
FILTER (str(?pi1) < str(?pi2))
}
</sparql:select>
<li><a href="#">Unique co-investigator linkages</a> (${fn:length(discopis.rows)})</li>
</sparql:sparql>
</sparql:lock>
</ul>
</div>
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