c5acf46316
Add more labels by changing the filter in the label_stripper/label_inserter scripts. Improve the structure of the scripts to use an external filter.
101 lines
3 KiB
Ruby
Executable file
101 lines
3 KiB
Ruby
Executable file
#!/usr/bin/ruby
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=begin
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--------------------------------------------------------------------------------
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A utility that reads an RDF file, builds a model, sorts all of the URIs that have
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labels, and produces a file of those labels, one per line. The idea is that this
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file could be translated, and the result could be put into RDF by label_inserter.rb
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This required the RDF.rb gem: sudo gem install rdf
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On the command line provide the path to the RDF file. E.g.:
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label_stripper.rb '../../vivo-core-1.5-annotations.rdf'
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--------------------------------------------------------------------------------
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=end
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$: << File.dirname(File.expand_path(__FILE__))
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require 'rubygems'
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require 'rdf'
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require 'label_common'
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require 'rdf/n3'
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include RDF
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class LabelStripper
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# ------------------------------------------------------------------------------------
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private
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# ------------------------------------------------------------------------------------
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#
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# Parse the arguments and complain if they don't make sense.
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#
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def sanity_check_arguments(args)
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if args[-1].downcase == 'ok'
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ok = true
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args.pop
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else
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ok = false
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end
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raise UsageError, "usage is: label_stripper.rb <rdf_file> [filter_file] <labels_output_file> [ok]" unless (2..3).include?(args.length)
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output_file = args.pop
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raise UsageError, "File '#{output_file}' already exists. specify 'ok' to overwrite it." if File.exist?(output_file) && !ok
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rdf_file = args[0]
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raise UsageError, "File '#{rdf_file}' does not exist." unless File.exist?(rdf_file)
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filter_file = args[1]
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raise UsageError, "File '#{filter_file}' does not exist." if filter_file && !File.exist?(filter_file)
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filter = LabelCommon.load_filter(filter_file)
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return rdf_file, filter, output_file
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end
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# ------------------------------------------------------------------------------------
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public
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# ------------------------------------------------------------------------------------
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def initialize(args)
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@rdf_file, @filter, @labels_output_file = sanity_check_arguments(args)
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rescue UsageError => e
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puts "\n----------------\nUsage error\n----------------\n\n#{e}\n\n----------------\n\n"
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exit
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rescue FilterError => e
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puts "\n----------------\nFilter file is invalid\n----------------\n\n#{e}\n\n----------------\n\n"
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exit
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end
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def process()
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query = Query.new({
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:prop => {
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RDFS.label => :label,
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}
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})
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solutions = LabelCommon.new(@rdf_file).process(query, &@filter)
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File.open(@labels_output_file, 'w') do |f|
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solutions.each do |s|
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f.puts s.label
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end
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end
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end
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end
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#
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#
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# ------------------------------------------------------------------------------------
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# Standalone calling.
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#
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# Do this if this program was called from the command line. That is, if the command
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# expands to the path of this file.
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# ------------------------------------------------------------------------------------
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#
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if File.expand_path($0) == File.expand_path(__FILE__)
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stripper = LabelStripper.new(ARGV)
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stripper.process()
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end
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