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Author SHA1 Message Date
Kevin Backhouse
dd04f3def8 Add sanitization to fix SPARQL injection vulnerability. (#111) 
Resolves https://jira.duraspace.org/browse/VIVO-1697
 2019-07-15 12:15:03 -06:00
Graham Triggs
f011af1339 Replace PR #99 (#125) 
* [VIVO-1656] Extension mechansim for passing properties to templates for Individuals

* [VIVO-1656] Extension mechansim for passing properties to templates for Individuals
 2019-06-07 13:01:39 -04:00
Graham Triggs
47ae42c019 Upgrade Jena to 3.11.0 (#119) 
Resolves: https://jira.duraspace.org/browse/VIVO-1693
 2019-05-07 15:54:31 -04:00
gneissone
bd6140a8cc Remove trailing whitespace throughout project 2019-05-03 12:50:05 -04:00
alessandroGalasso
74b8f16aa2 [VIVO-1641] REPLACE jena afn with cross-platform regex (#105) 
Resolves https://jira.duraspace.org/browse/VIVO-1641
 2019-03-20 13:22:14 -04:00
Graham Triggs
12d703b4c8 [VIVO-1667] Language filtering for CONSTRUCT queries (#107) 
* Language filtering for CONSTRUCT queries
* Use an intermediate model for filtering if the destination is not empty

Resolves: https://jira.duraspace.org/browse/VIVO-1667
 2019-03-19 10:15:56 -04:00
gneissone
49b03cb56e Update YASQE to fix SPARQL query page freeze issue 2019-02-15 11:50:27 -05:00
Ben
1461f33f9f [VIVO-1674] Improve quality of thumbnails created (#112) 
* Explicitly set image quality and interpolation method
* Use twelvemonkeys plugin for thumbnail creation

Resolves: https://jira.duraspace.org/browse/VIVO-1674
 2019-02-13 12:04:57 -05:00
Graham Triggs
c3e8cc739b [VIVO-1668] Efficiency improvements in AboxRecomputer (#108) 
* Ensure we only use statements for the current individual in Recomputer
* Make AboxRecomputer more efficient when acquiring the list of individuals

Resolves: https://jira.duraspace.org/browse/VIVO-1668
 2019-02-12 09:40:02 -05:00
gneissone
6e717446b4 Replace antrun-plugin <tasks> with <target> in pom.xml files 2019-01-14 17:27:37 -05:00
Don Elsborg
ad24dc306d moved weblink changes from VIVO to Vitro (#101) 
Related to: Related to: https://jira.duraspace.org/browse/VIVO-1619
 2019-01-08 09:49:12 -05:00
Stefan-Wolff
129e1219a8 [VIVO-1528] Select an editor for input fields based on annotation (#76) 
* provide WYSIWYG editor for range XMLLiteral only

* Update defaultDataPropertyForm.ftl

* add annotation based selection of the desired editor for editing values
of datatype properties in the frontend

* create new annotation vitro:editing to allow configuration of desired
editor for editing of related dataproperties

Resolves: https://jira.duraspace.org/browse/VIVO-1528
 2018-12-07 09:14:36 -05:00
alessandroGalasso
734b9ccf68 [VIVO-1649] fix for RDFServiceSparql.executeUpdate method (#97) 
Resolves: https://jira.duraspace.org/browse/VIVO-1649
 2018-12-05 19:52:40 -05:00
Kitio Fofack
d2c34ddf46 [VIVO-1543] Fix incorrect flash.ftl include statement (#95) 
Resolves https://jira.duraspace.org/browse/VIVO-1543
 2018-12-05 11:57:23 -07:00
Svantje Lilienthal
554c5dec8b [VIVO-1639] Improve display of search results -- remove class names (#96) 
Resolves: https://jira.duraspace.org/browse/VIVO-1639
 2018-12-05 10:27:18 -05:00
Graham Triggs
42dacf1f16 [VIVO-1620] Improve AuthenticateTest performance (#93) 
* Improve test execution time

Resolves: https://jira.duraspace.org/browse/VIVO-1620
 2018-11-27 10:09:39 -05:00
Graham Triggs
a3cd382117 Multi-lingual support for menus (#91) 2018-11-13 08:51:27 -05:00
Andrew Woods
6aa34ee9ca Add Travis-CI Badge to README.md (#92) 
Resolves: https://jira.duraspace.org/browse/VIVO-1618
 2018-10-31 11:17:42 -04:00
Graham Triggs
fe00198dd5 [VIVO-1613] Fix menu ordering bug (#90) 
Resolves https://jira.duraspace.org/browse/VIVO-1613
 2018-10-29 10:57:15 -06:00
Graham Triggs
73d6a85e5e [VIVO-1605] Update to latest Error Prone plugin and configuration to support JDK 11 (#88) 
* Update to latest Error Prone plugin and configuration to support JDK 11

* Update Error Prone from SNAPSHOT

* Add Javac version missing from Error Prone docs

Partial resolution of: https://jira.duraspace.org/browse/VIVO-1605
 2018-10-25 12:51:52 -04:00
Graham Triggs
dc74a5264f [VIVO-1608] Fix node removal from the XML so that it works with an XML tree of arbitrary depth (#89) 
Resolves: https://jira.duraspace.org/browse/VIVO-1608
 2018-10-16 09:42:25 -04:00
Ben
5ca7a9235f Add check for language files to smoke tests and remove references to … (#74) 
* Add check for language files to smoke tests and remove references to build.properties

* Catch IOException more goodly

* Make languages.selectableLocales optional, fix default value for RDFService.languageFilter
 2018-09-24 14:36:35 -04:00
Katrin Leinweber
96a2b8a474 Update links 2018-09-20 13:44:26 -04:00
Graham Triggs
b049aa6d32 Moved stream reset inside loop so that every listener gets the same state (#79) 2018-08-06 10:29:37 -04:00
vivo-uab
f2656ba3d8 [maven-scm-plugin] prepare development vitro-1.11.0-SNAPSHOT 2018-07-09 17:17:08 -04:00
vivo-uab
2c3c97be5e [maven-scm-plugin] prepare release vitro-1.10.0 2018-07-09 17:17:08 -04:00
Ralph O'Flinn
2168165b22 Update pom.xml - jenatools 
Change dependency to point to release versions of jena2 and jena3 tools
 2018-07-09 17:17:08 -04:00
Ralph O'Flinn
ab0fcfed4a Update pom.xml - release deployment 
Updated release profile, nexus-staging-maven-plugin plug-in version, repository
 2018-07-09 17:17:08 -04:00
Andrew Woods
1570f52957 Update jenatools dependency to 1.2.0-SNAPSHOT (#75) 
* Update jenatools dependency to 1.2.0-SNAPSHOT

Related to: https://jira.duraspace.org/browse/VIVO-1520

* Add Sonatype snapshot repository

Related to: https://jira.duraspace.org/browse/VIVO-1520
 2018-05-30 14:47:11 -04:00
Mike Conlon
111c0a8ee5
Merge pull request #73 from Asimq/develop 
Moved password encryption from MD5 to a salted and secure hash - 1448
 2018-05-23 13:49:04 -04:00
AsimA
df58f2d18c remvoed the unused import 2018-05-23 11:28:35 +02:00
AsimA
fea33a456a Fixed the user experience 2018-05-23 11:25:58 +02:00
AsimA
fcaf315549 added smokeTests for argon2 parameters 2018-05-22 15:55:00 +02:00
AsimA
1e231013b0 Updated the tests to store argon2 as well as md5password 2018-05-22 14:57:42 +02:00
AsimA
96388c0951 Removed the overloaded Argon2Encoding methods in Authenticator and moved the Argon2StubEncoding method to AuthenticatorStub 2018-05-22 13:41:26 +02:00
AsimA
aeb9754500 Fixed the styling 2018-05-18 16:40:08 +02:00
Asim
a8d5020ede updated the snapshot versions to 1.10.0 2018-05-17 11:16:03 +02:00
Asim
752f9d1229 Fixed the tests 2018-05-09 13:51:11 +02:00
Ben
c9ce576f6b [VIVO-1488] Look in vitro.home/config directory for runtime.properties at startup (#63) 
* Look in vitro.home/config directory for runtime.properties at startup

* Show deprecation warning on startup if runtime.properties in vivo.home

* Reuse string variable, use .equals()
 2018-05-07 10:21:03 -04:00
Jim Blake
b406f99fec VIVO-1478 mysql driver throws exception (#69) 
* VIVO-1478 Add time zone to the MySQL URL, to avoid an InvalidConnectionAttributeOption. 
* Go with proven driver version, rather than the most recent.
 2018-05-04 08:44:43 -06:00
Ben
efe8f265dc Upgrade to Jena 3.6.0 (#67) 
Resolves: https://jira.duraspace.org/browse/VIVO-1458
 2018-05-03 10:26:06 -04:00
Graham Triggs
afaed98291 [VIVO-1470] Cross-platform improvements for Maven (#68) 2018-05-02 12:49:53 +03:00
Mike Conlon
a1e8a52442
Merge pull request #70 from awoods/vivo-1479 
Change project version from 2.0.0-SNAPSHOT to 1.10.0-SNAPSHOT
 2018-04-26 12:58:25 -04:00
Andrew Woods
80625e3b4c Change project version from 2.0.0-SNAPSHOT to 1.10.0-SNAPSHOT 
Resolves: https://jira.duraspace.org/browse/VIVO-1479
 2018-04-24 17:09:02 -04:00
Asim
067e629a9c Changed Md5 password hashing to Argon2i password hashing 2018-04-23 10:02:51 +02:00
hudajkhan
07686ebdf0
Merge pull request #65 from j2blake/feature/VIVO-1408_java-rdf-namespaces 
VIVO-1408 ConfigurationBeanLoader: java rdf namespaces
 2018-04-03 15:42:07 -04:00
Ben
c0927899d2 VIVO-1437 Add pull request template (#66) 
* Add pull request template

Resolves: https://jira.duraspace.org/browse/VIVO-1437
 2018-02-07 19:40:45 -05:00
Huda J. Khan
b8fd17ba1e Revert "integrating related term info in skos utils" 
This reverts commit 8f66b10323.
 2018-02-07 18:39:58 -05:00
Huda J. Khan
a978fa27e9 Merge branch 'develop' of https://github.com/vivo-project/Vitro into develop 2018-02-07 15:35:21 -05:00
Huda J. Khan
8f66b10323 integrating related term info in skos utils 2018-02-07 15:35:05 -05:00