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Small editorial changes.

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ejc12 2010-07-25 20:58:16 +00:00
parent c476602e1a
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doc/install.txt
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@ -54,7 +54,7 @@ II. Create an empty MySQL database
Decide on a database name, username, and password. Log into your MySQL server Decide on a database name, username, and password. Log into your MySQL server
and create a new database in MySQL that uses UTF-8 encoding. You will need and create a new database in MySQL that uses UTF-8 encoding. You will need
these values for step IV when you configure the deployment properties. At the these values for step IV when you configure the deployment properties. At the
mysql command line you can create the database and user with these commands MySQL command line you can create the database and user with these commands
substituting your values for "dbname", "username", and "password". Most of the substituting your values for "dbname", "username", and "password". Most of the
time, the "hostname" will equal "localhost". time, the "hostname" will equal "localhost".
@ -164,8 +164,8 @@ to build VIVO and deploy to Tomcat's webapps directory.
VI. Set Tomcat JVM Parameters VI. Set Tomcat JVM Parameters
Currently, VIVO copies the contents of your RDF database into memory in order Currently, VIVO copies the contents of your RDF database into memory in order
to serve Web requests quickly. (The in-memory copy and the underlying database to serve Web requests quickly (the in-memory copy and the underlying database
are kept in synch as edits are performed.) are kept in synch as edits are performed).
VIVO will require more memory than that allocated to Tomcat by default. With VIVO will require more memory than that allocated to Tomcat by default. With
most installations of Tomcat, the setenv.sh or setenv.bat file in Tomcat's bin most installations of Tomcat, the setenv.sh or setenv.bat file in Tomcat's bin
@ -181,8 +181,8 @@ practical heap size for production installations storing data for large academic
institutions, and additional heap space is preferable. For testing with small institutions, and additional heap space is preferable. For testing with small
sets of data, 256m to 512m should be sufficient. sets of data, 256m to 512m should be sufficient.
If an OutOfMemoryError is encountered during VIVO execution, increasing the If an OutOfMemoryError is encountered during VIVO execution, it can be remedied
heap parameters and restarting Tomcat is the typical remedy. by increasing the heap parameters and restarting Tomcat.
------------------------------------------------------------------------------- -------------------------------------------------------------------------------
@ -202,7 +202,7 @@ VIII. Log in and add RDF data
If the startup was successful, you will see a welcome message informing you If the startup was successful, you will see a welcome message informing you
that you have successfully installed VIVO. Click the "Log in" link near the that you have successfully installed VIVO. Click the "Log in" link near the
upper right corner. Log in with the initialAdminUser username you set up in upper right corner. Log in with the initialAdminUser username you set up in
step IV. The initial password the initialAdminUser is defaultAdmin. On first Step IV. The initial password for initialAdminUser is defaultAdmin. On first
login, you will be prompted to select a new password and verify it a second login, you will be prompted to select a new password and verify it a second
time. time.
@ -213,7 +213,7 @@ to make visible on your website must be part of a class group, and there a
number of visibility and display options available for each ontology entity. number of visibility and display options available for each ontology entity.
VIVO comes with a core VIVO ontology, but you may also upload other ontologies VIVO comes with a core VIVO ontology, but you may also upload other ontologies
from an RDF file. Under the "Advanced Data Tools", click "Add/Remove RDF Data." from an RDF file. Under the "Advanced Data Tools" click "Add/Remove RDF Data."
Note that Vitro currently works best with OWL-DL ontologies and has only limited Note that Vitro currently works best with OWL-DL ontologies and has only limited
support for pure RDF data. You can enter a URL pointing to the RDF data you support for pure RDF data. You can enter a URL pointing to the RDF data you
wish to load or upload a file on your local machine. Ensure that the "add RDF" wish to load or upload a file on your local machine. Ensure that the "add RDF"
@ -233,8 +233,8 @@ application. This is the email that the contact form submits to. It can be a
list server or an individual's email address. list server or an individual's email address.
Log in as a system administrator. Navigate to the "Site Admin" table of contents Log in as a system administrator. Navigate to the "Site Admin" table of contents
(link in the right side of the header). Go to "Site Information" (under "Site (link in the right side of the header). Go to "Site Information" (under "Site
Configuration"). In the "Site Information Editing Form", enter a functional Configuration"). In the "Site Information Editing Form," enter a functional
email address in the field "Contact Email Address." and submit the change. email address in the field "Contact Email Address." and submit the change.
If you set the Vitro.smtpHost in Step IV and do NOT provide an email address If you set the Vitro.smtpHost in Step IV and do NOT provide an email address
@ -325,7 +325,7 @@ installation was successful.
Here is a simple test to see whether the ontology files were loaded: Here is a simple test to see whether the ontology files were loaded:
* Click on the "Index" link on the upper left, below the logo. You should see * Click on the "Index" link on the upper left, below the logo. You should see
a "locations" section, with links for "Country" and "Geographic Location". a "locations" section, with links for "Country" and "Geographic Location."
The index is built in a background thread, so on your first login, you may The index is built in a background thread, so on your first login, you may
see an empty index instead. Refresh the page periodically to see whether see an empty index instead. Refresh the page periodically to see whether
the index will be populated. This may take some time: with VIVO installed the index will be populated. This may take some time: with VIVO installed
@ -337,21 +337,21 @@ Here is a simple test to see whether the ontology files were loaded:
Here is a test to see whether your system is configured to serve linked data: Here is a test to see whether your system is configured to serve linked data:
* Point your browser to the home page of your website, and click the "Log in" link * Point your browser to the home page of your website, and click the "Log in" link
near the upper right corner. Log in with the initialAdminUser username you near the upper right corner. Log in with the initialAdminUser username you
set up in step IV. If this is your first time logging in, you will be set up in Step IV. If this is your first time logging in, you will be
prompted to change the password. prompted to change the password.
* After you have successfully logged in, click "site admin" in the upper right * After you have successfully logged in, click "site admin" in the upper right
corner. In the drop down under "Data Input", select "Faculty Member(core)" corner. In the drop down under "Data Input" select "Faculty Member(core)"
and click the "Add individual of this class" button. and click the "Add individual of this class" button.
* Enter the name "test individual" under the field "Individual Name", scroll to * Enter the name "test individual" under the field "Individual Name," scroll to
the bottom, and click "Create New Record".You will be taken to the "Individual the bottom, and click "Create New Record." You will be taken to the "Individual
Control Panel". Make note of the value of the field "URI", it will be used in Control Panel." Make note of the value of the field "URI" it will be used in
the next step. the next step.
* Open a new web browser or browser tab to the page "http://marbles.sourceforge.net/". * Open a new web browser or browser tab to the page http://marbles.sourceforge.net/.
In the pink box on that page enter the URI of the individual you created in the In the pink box on that page enter the URI of the individual you created in the
previous step and click "open." previous step and click "open."
* In the resulting page search for the URI of the "test individual". You should * In the resulting page search for the URI of the "test individual." You should
find it towards the bottom of the page next to a red dot followed by "redirect (303)" find it towards the bottom of the page next to a red dot followed by "redirect
This indicates that you are successfully serving linked RDF data. (303)." This indicates that you are successfully serving linked RDF data.
If the URI of the "test individual" is followed by "failed (400)" you are not If the URI of the "test individual" is followed by "failed (400)" you are not
successfully serving linked data. successfully serving linked data.